Rh6CG186700

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000073
Physical Location & Seq
Forward (+)
30312319 .. 30327720
15402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG186700.1

Sequence Viewer

Length: 1509 bp
ATGGCACTCTCTCCAACTGACCATGAAGACATCCCTTATGAAGATGAAGGTATTATCGAAGCGATGTCTGTTAACTTTGAACAGAGTGTAGACTTCCTTTATCTGGAATCTGGCATTGACCTTTTGGATTTACTTATTGTGGATGAGGAGCATGTATTAGGGGGAATCAAGCTACACTTATGGCTAGCCCGAAAGTTATTGGAGGATAGTCCATGGAATGTTAAAGAATACTGTTTTTCAATCCGTCATTGGCCTCGCTTCCATTCCATTGATGAACTTGAAACCAATCGAGCTACCTACTGGATCCAAGCCCATGGTATCCCTCGAGACCAGTTATCACTCAACAATGGAAGAAGGCTTGGAAATCTATTGGGTTCGGTAATCGACATTGAGGATCCTCTGGTTACCGGAAATAGGGGATATCTAAGGAAGATGATTGATTTTGATACTACAAGACCTCTGGCCACTTTTATTCAGCTCCCACGATCTAATTCCAGTGTTTCTAAAATCTGGTTACAGTACGAAAACCTGAAGGCCTTCTGCTTCAATTGTGGTCGATTGGGTCATATGGTTTCTTCTTGTAGATACGTCAAGCATCCTCTCTTGGTCAAGCTGGGAGTAATTTATGATTCTTTCTTAGTTGCAGATCCCCCACAAAAGCCAATCTTTACTCAAGACCATTTCCCACTGGAGTTCCCATATGCTTCGACCACCGGCATCTTTCGTTGGAATCCTCCTAAGGATTTTTCAAATCCTGAAATTGCTGTTGCAACTGATGTGGACAGACCCCTTTGGCACACAGTTCAACTACTGAAAGGGACAGCTCCAACAGCTCTCTGCCATCAAAGAAAGAGTTTACCCATCAAAAGGAAGAGACAAACAAAGATTAAGGATGGGGCAAAGGATATGGGAGGAAAGAAGTCAAAAGTAGTACGCAGCCCCAGTCTCCAACTATCTTCCGGGGATGGAAGAGCTAAGGGAAGGGGTAGAGCTGGTATAGTTGGTAGAGGGAAAGGTATATCTTTTGTTGAGCTAGATGTTTCCAGTGTTGCTAATTCTACTTCGTTGGGCTCATTACCTACTGAACCAGGAATTGAGTGTATTGCATCTATCTCTACTGCACCGAATCTTGTTACTAAAGTAACATATAGTAATTGTGCTTCTCATTTTGGAACTGAACAGGATAAAGATCATTGTCCTTTCCATTTGAAAACTGGAACTTGTCGGTTTGGTCAGCATTGCAGCAGAGTCCATTTCTACCCGGATAAATCATCCACATTGCTTATCAAGAACATGTACAATGGTCCTGGCCTTACTTGGGAGCAGGATGAGGGGCTCGAGCTATATGTAGTACTGAGGGTTGTATATCCATTTCTAAACATACCTCAAGATTTAATGGACTCCTCAAAGGCTAAGGGAATCATGAGCTCCCAACCATTAGCAGTCATGCTGCAAAAATTAAACCCAATTACCAAACATGGTAGAGGAAAGACTGCAAAGTTTAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_3 zf-CCHC_4

Protein Analysis

502

Amino Acids

56.33

Weight (kDa)

8.83

Isoelectric Point (pI)

38.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 148 - 196 3.7e-09 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 90
AclWI GGATC 5 cut(s) 298, 311, 389, 402, 641
AcoI YGGCCR 1 cut(s) 462
AcuI CTGAAG 1 cut(s) 551
AfaI GTAC 4 cut(s) 521, 933, 1298, 1353
AfiI CCNNNNNNNGG 4 cut(s) 103, 414, 867, 1318
AflIII ACRYGT 1 cut(s) 1293
AgsI TTSAA 7 cut(s) 80, 240, 281, 547, 750, 806, 1210
AjnI CCWGG 2 cut(s) 1087, 1306
Alw21I GWGCWC 1 cut(s) 1430
Alw26I GTCTC 3 cut(s) 321, 868, 950
AlwI GGATC 5 cut(s) 298, 311, 389, 402, 641
Ama87I CYCGRG 2 cut(s) 324, 1337
AoxI GGCC 4 cut(s) 251, 462, 534, 1309
ApeKI GCWGC 3 cut(s) 936, 1242, 1450
Asp700I GAANNNNTTC 1 cut(s) 536
AspS9I GGNCC 1 cut(s) 1304
AsuC2I CCSGG 2 cut(s) 961, 1262
AsuNHI GCTAGC 1 cut(s) 184
AvaI CYCGRG 2 cut(s) 324, 1337
AvaII GGWCC 1 cut(s) 1304
AxyI CCTNAGG 1 cut(s) 738
BalI TGGCCA 1 cut(s) 464
BamHI GGATCC 2 cut(s) 303, 394
BanII GRGCYC 3 cut(s) 1073, 1338, 1430
BarI GAAGNNNNNNTAC 2 cut(s) 1144, 1176
BbsI GAAGAC 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 1430
BbvI GCAGC 3 cut(s) 948, 1254, 1437
BccI CCATC 4 cut(s) 849, 869, 887, 959
BciT130I CCWGG 2 cut(s) 1089, 1308
BciVI GTATCC 1 cut(s) 329
BcnI CCSGG 2 cut(s) 961, 1262
BcoDI GTCTC 3 cut(s) 321, 868, 950
BfaI CTAG 2 cut(s) 185, 1034
BfuI GTATCC 1 cut(s) 329
BisI GCNGC 3 cut(s) 937, 1243, 1451
BlsI GCNGC 3 cut(s) 938, 1244, 1452
BmcAI AGTACT 1 cut(s) 1353
Bme1390I CCNGG 4 cut(s) 961, 1089, 1262, 1308
Bme18I GGWCC 1 cut(s) 1304
BmeT110I CYCGRG 2 cut(s) 324, 1337
BmgT120I GGNCC 1 cut(s) 1304
BmiI GGNNCC 2 cut(s) 305, 396
BmrFI CCNGG 4 cut(s) 961, 1089, 1262, 1308
BmrI ACTGGG 1 cut(s) 936
BmsI GCATC 3 cut(s) 604, 726, 1115
BmtI GCTAGC 1 cut(s) 188
BmuI ACTGGG 1 cut(s) 936
BpiI GAAGAC 1 cut(s) 33
BpmI CTGGAG 1 cut(s) 710
Bpu10I CCTNAGC 2 cut(s) 975, 1413
BpuEI CTTGAG 2 cut(s) 657, 1371
BpuMI CCSGG 2 cut(s) 961, 1262
BsaBI GATNNNNATC 1 cut(s) 1188
BsaI GGTCTC 1 cut(s) 321
BsaJI CCNNGG 3 cut(s) 212, 313, 960
BsaWI WCCGGW 1 cut(s) 407
Bsc4I CCNNNNNNNGG 4 cut(s) 103, 414, 867, 1318
Bse118I RCCGGY 1 cut(s) 713
Bse1I ACTGG 7 cut(s) 305, 331, 495, 693, 942, 1044, 1219
Bse21I CCTNAGG 1 cut(s) 738
Bse3DI GCAATG 2 cut(s) 1237, 1277
Bse8I GATNNNNATC 1 cut(s) 1188
BseBI CCWGG 2 cut(s) 1089, 1308
BseDI CCNNGG 3 cut(s) 212, 313, 960
BseGI GGATG 7 cut(s) 30, 148, 595, 898, 970, 1271, 1333
BseJI GATNNNNATC 1 cut(s) 1188
BseLI CCNNNNNNNGG 4 cut(s) 103, 414, 867, 1318
BseMI GCAATG 2 cut(s) 1237, 1277
BseMII CTCAG 1 cut(s) 1346
BseNI ACTGG 7 cut(s) 305, 331, 495, 693, 942, 1044, 1219
BseRI GAGGAG 2 cut(s) 161, 1393
BseXI GCAGC 3 cut(s) 948, 1254, 1437
BseYI CCCAGC 1 cut(s) 613
BsgI GTGCAG 1 cut(s) 1104
BshFI GGCC 4 cut(s) 253, 464, 536, 1311
BsiHKAI GWGCWC 1 cut(s) 1430
BsiHKCI CYCGRG 2 cut(s) 324, 1337
BsiSI CCGG 4 cut(s) 408, 714, 960, 1262
BslFI GGGAC 1 cut(s) 832
BslI CCNNNNNNNGG 4 cut(s) 103, 414, 867, 1318
BsmAI GTCTC 3 cut(s) 321, 868, 950
BsmFI GGGAC 1 cut(s) 832
BsnI GGCC 4 cut(s) 253, 464, 536, 1311
Bso31I GGTCTC 1 cut(s) 321
BsoBI CYCGRG 2 cut(s) 324, 1337
Bsp1286I GDGCHC 3 cut(s) 1073, 1338, 1430
Bsp1407I TGTACA 1 cut(s) 1296
Bsp143I GATC 5 cut(s) 303, 394, 485, 646, 1189
Bsp19I CCATGG 2 cut(s) 212, 313
BspANI GGCC 4 cut(s) 253, 464, 536, 1311
BspCNI CTCAG 1 cut(s) 1347
BspHI TCATGA 1 cut(s) 1422
BspLI GGNNCC 2 cut(s) 305, 396
BspOI GCTAGC 1 cut(s) 188
BspPI GGATC 5 cut(s) 298, 311, 389, 402, 641
BspQI GCTCTTC 1 cut(s) 964
BspTNI GGTCTC 1 cut(s) 321
BsrDI GCAATG 2 cut(s) 1237, 1277
BsrFI RCCGGY 1 cut(s) 713
BsrGI TGTACA 1 cut(s) 1296
BsrI ACTGG 7 cut(s) 305, 331, 495, 693, 942, 1044, 1219
BssAI RCCGGY 1 cut(s) 713
BssECI CCNNGG 3 cut(s) 212, 313, 960
BssMI GATC 5 cut(s) 303, 394, 485, 646, 1189
BssT1I CCWWGG 2 cut(s) 212, 313
Bst2UI CCWGG 2 cut(s) 1089, 1308
Bst4CI ACNGT 3 cut(s) 233, 519, 802
Bst6I CTCTTC 2 cut(s) 866, 964
BstAUI TGTACA 1 cut(s) 1296
BstC8I GCNNGC 1 cut(s) 186
BstDEI CTNAG 6 cut(s) 425, 637, 738, 975, 1355, 1413
BstDSI CCRYGG 2 cut(s) 212, 313
BstEII GGTNACC 1 cut(s) 403
BstF5I GGATG 7 cut(s) 30, 148, 595, 898, 970, 1271, 1333
BstKTI GATC 5 cut(s) 306, 397, 488, 649, 1192
BstMAI GTCTC 3 cut(s) 321, 868, 950
BstMBI GATC 5 cut(s) 303, 394, 485, 646, 1189
BstMWI GCNNNNNNNGC 1 cut(s) 830
BstNI CCWGG 2 cut(s) 1089, 1308
BstNSI RCATGY 2 cut(s) 155, 1297
BstPI GGTNACC 1 cut(s) 403
BstSCI CCNGG 4 cut(s) 959, 1087, 1260, 1306
BstV1I GCAGC 3 cut(s) 948, 1254, 1437
BstV2I GAAGAC 1 cut(s) 33
BstX2I RGATCY 3 cut(s) 303, 394, 646
BstXI CCANNNNNNTGG 1 cut(s) 314
BstYI RGATCY 3 cut(s) 303, 394, 646
Bsu36I CCTNAGG 1 cut(s) 738
BsuI GTATCC 1 cut(s) 329
BsuRI GGCC 4 cut(s) 253, 464, 536, 1311
BtgI CCRYGG 2 cut(s) 212, 313
BtgZI GCGATG 1 cut(s) 77
BtsCI GGATG 7 cut(s) 30, 148, 595, 898, 970, 1271, 1333
BtsIMutI CAGTG 3 cut(s) 502, 686, 1051
Cac8I GCNNGC 1 cut(s) 186
CciI TCATGA 1 cut(s) 1422
Cfr10I RCCGGY 1 cut(s) 713
Cfr13I GGNCC 1 cut(s) 1304
Csp6I GTAC 4 cut(s) 520, 932, 1297, 1352
CspCI CAANNNNNGTGG 2 cut(s) 759, 794
CviAII CATG 8 cut(s) 23, 152, 213, 314, 1294, 1423, 1447, 1478
CviQI GTAC 4 cut(s) 520, 932, 1297, 1352
DdeI CTNAG 6 cut(s) 425, 637, 738, 975, 1355, 1413
DpnI GATC 5 cut(s) 305, 396, 487, 648, 1191
DpnII GATC 5 cut(s) 303, 394, 485, 646, 1189
EaeI YGGCCR 1 cut(s) 462
Eam1104I CTCTTC 2 cut(s) 866, 964
EarI CTCTTC 2 cut(s) 866, 964
Ecl136II GAGCTC 1 cut(s) 1428
Eco130I CCWWGG 2 cut(s) 212, 313
Eco147I AGGCCT 1 cut(s) 536
Eco24I GRGCYC 3 cut(s) 1073, 1338, 1430
Eco31I GGTCTC 1 cut(s) 321
Eco32I GATATC 1 cut(s) 422
Eco47I GGWCC 1 cut(s) 1304
Eco53kI GAGCTC 1 cut(s) 1428
Eco57I CTGAAG 1 cut(s) 551
Eco81I CCTNAGG 1 cut(s) 738
Eco88I CYCGRG 2 cut(s) 324, 1337
Eco91I GGTNACC 1 cut(s) 403
EcoICRI GAGCTC 1 cut(s) 1428
EcoO65I GGTNACC 1 cut(s) 403
EcoRII CCWGG 2 cut(s) 1087, 1306
EcoRV GATATC 1 cut(s) 422
EcoT14I CCWWGG 2 cut(s) 212, 313
EcoT38I GRGCYC 3 cut(s) 1073, 1338, 1430
ErhI CCWWGG 2 cut(s) 212, 313
FaeI CATG 8 cut(s) 26, 155, 216, 317, 1297, 1426, 1450, 1481
FalI AAGNNNNNCTT 4 cut(s) 161, 193, 650, 682
FaqI GGGAC 1 cut(s) 832
FatI CATG 8 cut(s) 22, 151, 212, 313, 1293, 1422, 1446, 1477
FauNDI CATATG 2 cut(s) 567, 700
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 3 cut(s) 937, 1243, 1451
FokI GGATG 7 cut(s) 17, 155, 582, 905, 977, 1258, 1340
FriOI GRGCYC 3 cut(s) 1073, 1338, 1430
Fsp4HI GCNGC 3 cut(s) 937, 1243, 1451
FspBI CTAG 2 cut(s) 185, 1034
GluI GCNGC 3 cut(s) 937, 1243, 1451
GsaI CCCAGC 1 cut(s) 617
GsuI CTGGAG 1 cut(s) 710
HaeIII GGCC 4 cut(s) 253, 464, 536, 1311
HapII CCGG 4 cut(s) 408, 714, 960, 1262
Hin1II CATG 8 cut(s) 26, 155, 216, 317, 1297, 1426, 1450, 1481
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HinfI GANTC 8 cut(s) 107, 165, 629, 730, 1126, 1248, 1400, 1419
HpaI GTTAAC 1 cut(s) 73
HpaII CCGG 4 cut(s) 408, 714, 960, 1262
Hpy166II GTNNAC 4 cut(s) 73, 91, 781, 857
Hpy188III TCNNGA 7 cut(s) 104, 326, 674, 755, 1288, 1388, 1423
Hpy8I GTNNAC 4 cut(s) 73, 91, 781, 857
HpyAV CCTTC 5 cut(s) 41, 348, 526, 547, 975
HpyCH4III ACNGT 3 cut(s) 233, 519, 802
HpyCH4IV ACGT 1 cut(s) 588
HpyCH4V TGCA 7 cut(s) 644, 770, 1106, 1121, 1242, 1453, 1496
HpyF10VI GCNNNNNNNGC 1 cut(s) 830
HpyF3I CTNAG 6 cut(s) 425, 637, 738, 975, 1355, 1413
HpySE526I ACGT 1 cut(s) 588
Hsp92II CATG 8 cut(s) 26, 155, 216, 317, 1297, 1426, 1450, 1481
KspAI GTTAAC 1 cut(s) 73
Kzo9I GATC 5 cut(s) 303, 394, 485, 646, 1189
LguI GCTCTTC 1 cut(s) 964
LmnI GCTCC 5 cut(s) 148, 483, 829, 1321, 1433
Lsp1109I GCAGC 3 cut(s) 948, 1254, 1437
LweI GCATC 3 cut(s) 604, 726, 1115
MaeI CTAG 2 cut(s) 185, 1034
MaeII ACGT 1 cut(s) 588
MaeIII GTNAC 4 cut(s) 403, 513, 1132, 1141
MalI GATC 5 cut(s) 305, 396, 487, 648, 1191
MboI GATC 5 cut(s) 303, 394, 485, 646, 1189
MboII GAAGA 8 cut(s) 38, 53, 363, 442, 567, 883, 948, 981
MfeI CAATTG 1 cut(s) 547
MflI RGATCY 3 cut(s) 303, 394, 646
MhlI GDGCHC 3 cut(s) 1073, 1338, 1430
MlsI TGGCCA 1 cut(s) 464
MluCI AATT 9 cut(s) 490, 547, 621, 759, 1054, 1092, 1153, 1457, 1467
MluNI TGGCCA 1 cut(s) 464
MlyI GAGTC 2 cut(s) 1257, 1394
MmeI TCCRAC 4 cut(s) 38, 707, 851, 973
Mox20I TGGCCA 1 cut(s) 464
MroXI GAANNNNTTC 1 cut(s) 536
MscI TGGCCA 1 cut(s) 464
MseI TTAA 5 cut(s) 72, 222, 888, 1394, 1460
Msp20I TGGCCA 1 cut(s) 464
MspI CCGG 4 cut(s) 408, 714, 960, 1262
MspR9I CCNGG 4 cut(s) 961, 1089, 1262, 1308
MunI CAATTG 1 cut(s) 547
MvaI CCWGG 2 cut(s) 1089, 1308
MwoI GCNNNNNNNGC 1 cut(s) 830
NciI CCSGG 2 cut(s) 961, 1262
NcoI CCATGG 2 cut(s) 212, 313
NdeI CATATG 2 cut(s) 567, 700
NdeII GATC 5 cut(s) 303, 394, 485, 646, 1189
NheI GCTAGC 1 cut(s) 184
NlaIII CATG 8 cut(s) 26, 155, 216, 317, 1297, 1426, 1450, 1481
NlaIV GGNNCC 2 cut(s) 305, 396
NspI RCATGY 2 cut(s) 155, 1297
PaeR7I CTCGAG 2 cut(s) 324, 1337
PagI TCATGA 1 cut(s) 1422
PceI AGGCCT 1 cut(s) 536
PciI ACATGT 1 cut(s) 1293
PciSI GCTCTTC 1 cut(s) 964
PdmI GAANNNNTTC 1 cut(s) 536
PfeI GAWTC 6 cut(s) 107, 165, 629, 730, 1126, 1419
PkrI GCNGC 3 cut(s) 938, 1244, 1452
PleI GAGTC 2 cut(s) 1256, 1394
PpsI GAGTC 2 cut(s) 1256, 1394
PscI ACATGT 1 cut(s) 1293
Psp124BI GAGCTC 1 cut(s) 1430
Psp6I CCWGG 2 cut(s) 1087, 1306
PspEI GGTNACC 1 cut(s) 403
PspFI CCCAGC 1 cut(s) 613
PspGI CCWGG 2 cut(s) 1087, 1306
PspN4I GGNNCC 2 cut(s) 305, 396
PspPI GGNCC 1 cut(s) 1304
PspXI VCTCGAGB 1 cut(s) 1337
PsuI RGATCY 3 cut(s) 303, 394, 646
RsaI GTAC 4 cut(s) 521, 933, 1298, 1353
RsaNI GTAC 4 cut(s) 520, 932, 1297, 1352
SacI GAGCTC 1 cut(s) 1430
SapI GCTCTTC 1 cut(s) 964
SaqAI TTAA 5 cut(s) 72, 222, 888, 1394, 1460
SatI GCNGC 3 cut(s) 937, 1243, 1451
Sau3AI GATC 5 cut(s) 303, 394, 485, 646, 1189
Sau96I GGNCC 1 cut(s) 1304
ScaI AGTACT 1 cut(s) 1353
SchI GAGTC 2 cut(s) 1257, 1394
ScrFI CCNGG 4 cut(s) 961, 1089, 1262, 1308
SduI GDGCHC 3 cut(s) 1073, 1338, 1430
SfaNI GCATC 3 cut(s) 604, 726, 1115
Sfr274I CTCGAG 2 cut(s) 324, 1337
SinI GGWCC 1 cut(s) 1304
SlaI CTCGAG 2 cut(s) 324, 1337
SmlI CTYRAG 4 cut(s) 324, 672, 1337, 1386
SmoI CTYRAG 4 cut(s) 324, 672, 1337, 1386
Sse9I AATT 9 cut(s) 490, 547, 621, 759, 1054, 1092, 1153, 1457, 1467
SseBI AGGCCT 1 cut(s) 536
SspMI CTAG 2 cut(s) 185, 1034
SstI GAGCTC 1 cut(s) 1430
StuI AGGCCT 1 cut(s) 536
StyD4I CCNGG 4 cut(s) 959, 1087, 1260, 1306
StyI CCWWGG 2 cut(s) 212, 313
TaaI ACNGT 3 cut(s) 233, 519, 802
TaiI ACGT 1 cut(s) 591
TaqI TCGA 7 cut(s) 57, 289, 325, 384, 556, 707, 1338
TasI AATT 9 cut(s) 490, 547, 621, 759, 1054, 1092, 1153, 1457, 1467
TatI WGTACW 2 cut(s) 1296, 1351
TfiI GAWTC 6 cut(s) 107, 165, 629, 730, 1126, 1419
Tru1I TTAA 5 cut(s) 72, 222, 888, 1394, 1460
Tru9I TTAA 5 cut(s) 72, 222, 888, 1394, 1460
TscAI CASTG 3 cut(s) 502, 693, 1051
TseI GCWGC 3 cut(s) 936, 1242, 1450
TspDTI ATGAA 4 cut(s) 39, 54, 60, 288
TspGWI ACGGA 1 cut(s) 233
TspRI CASTG 3 cut(s) 502, 693, 1051
VpaK11BI GGWCC 1 cut(s) 1304
XceI RCATGY 2 cut(s) 155, 1297
XcmI CCANNNNNNNNNTGG 1 cut(s) 1211
XhoI CTCGAG 2 cut(s) 324, 1337
XmiI GTMKAC 1 cut(s) 90
XmnI GAANNNNTTC 1 cut(s) 536
XspI CTAG 2 cut(s) 185, 1034
ZrmI AGTACT 1 cut(s) 1353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.