RchiOBHm_Chr5g0027191

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000073
Physical Location & Seq
Forward (+)
21186842 .. 21189009
2168 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30674

Sequence Viewer

Length: 1098 bp
ATGCTGGGGTCAGTATTAGAGGTAGAAGATCCTACCATCATTGGGAACAGGGGTTACCTCCGCTTGAGAGTTGATTTCGATATGAGCAAGCCACTCGCAACCTTCATCCAACTCCCCAGAGCAAACTCTTCTACATCCAGAATTCGCCTACAGTACGAGAACCTCCGAAACTTTTGCTTCAATTGTGGCCGCTTGGGGCACATGTTCTCCTCGTGCAGGTATCAAGTTAACCCGATTCTGGTTTCTATGGGAGTTAAGTATGATAATTCCTTGATTGCAGACCCCCCACAGAAACCGGTCTTCACACAATCCAGCTTTCCTGCTGAGTTCCCCTATGTTCCGACAACCGGAATATTTGGCCGGAACAAGAGAGGGTCATTTCAGTCCAAAAATTTGAATTCTGAAAAGTTGGGATCCTCTGAGCACAATGGACCTAACAGGGCACACAATTCAACTTCTGATGGTGACTTGACTGCTAAGTACCATTCAGCAGGCCCATCCTGGTCATTACGTGATAAGTCCCTTTCTCCTTTGAGGCTCCATCGTCCTAGGATCCCTTTGACTGGACCCCCCCACCTTTGGGATCCGGACGCTCATGGCACCTTTTTTAGGAATGGCAGTGTCACCAGAGCTTTGGGTGGATTGAGCATAAAAGATGGGGCTTGGGCTGACCCGGAATGCATTCCTCCATGGGCCTTCCAGAACAAACATGAGTACTACAACTCAAACCCACACTTTCCTGTCCCTACCGAGATAGACAACTTTGGTGGGCCTCTGATTAAGCAAGCTGGACCTCCTTATATTCAGCTAATTGAGTTGAATCTTGCTGACACTATTGTGTCCATGATGGAGGAGAGCACTACTATGCCTGGAGTGACTAAAAGGAAGCGTAAACCAAAGAAATCCCTTGAGGAAGGCGGAGACAGTAAACCAACCCCAAAACGACCCAAAATTCTCCAGAGCCCAAGGCTCAGATTATCTAACACTGGAGGTAGGGGAAGAGGACGAGGCAGAGGGGGGAGGGGGAGAGGTAGGAATACTACAGACAGACCGAGCAAGCATCCCAACCCATTATCAAGTGACGCGCCCGATTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_3 zf-CCHC_4

Protein Analysis

365

Amino Acids

40.48

Weight (kDa)

9.98

Isoelectric Point (pI)

45.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 26 - 74 4e-11 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 207
AccB1I GGYRCC 1 cut(s) 599
AccII CGCG 1 cut(s) 1085
AccIII TCCGGA 1 cut(s) 586
AciI CCGC 3 cut(s) 61, 190, 918
AclWI GGATC 7 cut(s) 23, 408, 421, 547, 560, 578, 591
AcoI YGGCCR 2 cut(s) 187, 358
AcsI RAATTY 4 cut(s) 141, 391, 397, 951
AfaI GTAC 3 cut(s) 155, 482, 716
AfiI CCNNNNNNNGG 8 cut(s) 42, 216, 238, 347, 563, 579, 580, 609
AflIII ACRYGT 1 cut(s) 201
AgeI ACCGGT 1 cut(s) 295
AgsI TTSAA 4 cut(s) 181, 397, 453, 820
AjnI CCWGG 2 cut(s) 500, 868
AleI CACNNNNGTG 1 cut(s) 836
AluBI AGCT 4 cut(s) 315, 632, 788, 808
AluI AGCT 4 cut(s) 315, 632, 788, 808
Alw21I GWGCWC 2 cut(s) 426, 860
Alw26I GTCTC 1 cut(s) 915
AlwI GGATC 7 cut(s) 23, 408, 421, 547, 560, 578, 591
Aor13HI TCCGGA 1 cut(s) 586
AoxI GGCC 5 cut(s) 187, 358, 493, 693, 770
ApoI RAATTY 4 cut(s) 141, 391, 397, 951
AsiGI ACCGGT 1 cut(s) 295
Asp700I GAANNNNTTC 1 cut(s) 681
AspA2I CCTAGG 1 cut(s) 548
AspLEI GCGC 1 cut(s) 1087
AspS9I GGNCC 6 cut(s) 431, 494, 566, 693, 770, 791
AsuC2I CCSGG 1 cut(s) 674
AsuHPI GGTGA 2 cut(s) 476, 616
AvaII GGWCC 3 cut(s) 431, 566, 791
AvrII CCTAGG 1 cut(s) 548
BaeGI GKGCMC 2 cut(s) 201, 445
BamHI GGATCC 3 cut(s) 413, 552, 583
BanI GGYRCC 1 cut(s) 599
BanII GRGCYC 1 cut(s) 965
BauI CACGAG 1 cut(s) 211
BbsI GAAGAC 1 cut(s) 292
Bbv12I GWGCWC 2 cut(s) 426, 860
BccI CCATC 6 cut(s) 44, 455, 505, 549, 650, 841
BcgI CGANNNNNNTGC 4 cut(s) 76, 110, 156, 190
BciT130I CCWGG 2 cut(s) 502, 870
BcnI CCSGG 1 cut(s) 674
BcoDI GTCTC 1 cut(s) 915
BfaI CTAG 2 cut(s) 549, 1096
BfmI CTRYAG 2 cut(s) 149, 1041
BfuAI ACCTGC 1 cut(s) 207
BisI GCNGC 1 cut(s) 190
BlnI CCTAGG 1 cut(s) 548
BlsI GCNGC 1 cut(s) 191
BmcAI AGTACT 1 cut(s) 716
Bme1390I CCNGG 3 cut(s) 502, 674, 870
Bme18I GGWCC 3 cut(s) 431, 566, 791
BmgT120I GGNCC 6 cut(s) 431, 494, 566, 693, 770, 791
BmiI GGNNCC 6 cut(s) 415, 539, 554, 568, 585, 601
BmrFI CCNGG 3 cut(s) 502, 674, 870
BmsI GCATC 1 cut(s) 1069
BpiI GAAGAC 1 cut(s) 292
BpmI CTGGAG 3 cut(s) 891, 941, 1008
BpuEI CTTGAG 2 cut(s) 85, 929
BpuMI CCSGG 1 cut(s) 674
BsaAI YACGTR 1 cut(s) 512
BsaJI CCNNGG 3 cut(s) 548, 689, 965
BsaWI WCCGGW 3 cut(s) 295, 347, 586
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 8 cut(s) 42, 216, 238, 347, 563, 579, 580, 609
Bse118I RCCGGY 1 cut(s) 295
Bse1I ACTGG 2 cut(s) 568, 991
BseAI TCCGGA 1 cut(s) 586
BseBI CCWGG 2 cut(s) 502, 870
BseDI CCNNGG 3 cut(s) 548, 689, 965
BseGI GGATG 4 cut(s) 105, 134, 497, 1060
BseLI CCNNNNNNNGG 8 cut(s) 42, 216, 238, 347, 563, 579, 580, 609
BseMII CTCAG 3 cut(s) 315, 411, 985
BseNI ACTGG 2 cut(s) 568, 991
BseRI GAGGAG 2 cut(s) 199, 866
BseSI GKGCMC 2 cut(s) 201, 445
BseYI CCCAGC 1 cut(s) 4
BsgI GTGCAG 1 cut(s) 235
Bsh1236I CGCG 1 cut(s) 1085
BshFI GGCC 5 cut(s) 189, 360, 495, 695, 772
BshNI GGYRCC 1 cut(s) 599
BshTI ACCGGT 1 cut(s) 295
BsiHKAI GWGCWC 2 cut(s) 426, 860
BsiSI CCGG 5 cut(s) 296, 348, 361, 587, 674
BslFI GGGAC 2 cut(s) 505, 728
BslI CCNNNNNNNGG 8 cut(s) 42, 216, 238, 347, 563, 579, 580, 609
BsmAI GTCTC 1 cut(s) 915
BsmFI GGGAC 2 cut(s) 505, 728
BsmI GAATGC 2 cut(s) 681, 683
BsnI GGCC 5 cut(s) 189, 360, 495, 695, 772
Bsp1286I GDGCHC 5 cut(s) 201, 426, 445, 860, 965
Bsp13I TCCGGA 1 cut(s) 586
Bsp143I GATC 4 cut(s) 28, 413, 552, 583
Bsp19I CCATGG 1 cut(s) 689
BspACI CCGC 3 cut(s) 61, 190, 918
BspANI GGCC 5 cut(s) 189, 360, 495, 695, 772
BspCNI CTCAG 3 cut(s) 316, 412, 984
BspEI TCCGGA 1 cut(s) 586
BspFNI CGCG 1 cut(s) 1085
BspLI GGNNCC 6 cut(s) 415, 539, 554, 568, 585, 601
BspMI ACCTGC 1 cut(s) 207
BspPI GGATC 7 cut(s) 23, 408, 421, 547, 560, 578, 591
BspT107I GGYRCC 1 cut(s) 599
BsrFI RCCGGY 1 cut(s) 295
BsrI ACTGG 2 cut(s) 568, 991
BssAI RCCGGY 1 cut(s) 295
BssECI CCNNGG 3 cut(s) 548, 689, 965
BssMI GATC 4 cut(s) 28, 413, 552, 583
BssSI CACGAG 1 cut(s) 211
BssT1I CCWWGG 3 cut(s) 548, 689, 965
Bst2BI CACGAG 1 cut(s) 211
Bst2UI CCWGG 2 cut(s) 502, 870
Bst4CI ACNGT 2 cut(s) 153, 926
Bst6I CTCTTC 2 cut(s) 133, 994
BstBAI YACGTR 1 cut(s) 512
BstC8I GCNNGC 4 cut(s) 89, 493, 786, 1058
BstDEI CTNAG 4 cut(s) 324, 420, 477, 971
BstDSI CCRYGG 1 cut(s) 689
BstEII GGTNACC 1 cut(s) 53
BstENI CCTNNNNNAGG 2 cut(s) 214, 607
BstF5I GGATG 4 cut(s) 105, 134, 497, 1060
BstFNI CGCG 1 cut(s) 1085
BstHHI GCGC 1 cut(s) 1087
BstKTI GATC 4 cut(s) 31, 416, 555, 586
BstMAI GTCTC 1 cut(s) 915
BstMBI GATC 4 cut(s) 28, 413, 552, 583
BstNI CCWGG 2 cut(s) 502, 870
BstNSI RCATGY 1 cut(s) 205
BstPI GGTNACC 1 cut(s) 53
BstSCI CCNGG 3 cut(s) 500, 672, 868
BstSFI CTRYAG 2 cut(s) 149, 1041
BstSLI GKGCMC 2 cut(s) 201, 445
BstUI CGCG 1 cut(s) 1085
BstV2I GAAGAC 1 cut(s) 292
BstX2I RGATCY 4 cut(s) 28, 413, 552, 583
BstXI CCANNNNNNTGG 1 cut(s) 634
BstYI RGATCY 4 cut(s) 28, 413, 552, 583
BsuRI GGCC 5 cut(s) 189, 360, 495, 695, 772
BtgI CCRYGG 1 cut(s) 689
BtsCI GGATG 4 cut(s) 105, 134, 497, 1060
BtsI GCAGTG 1 cut(s) 625
BtsIMutI CAGTG 2 cut(s) 625, 984
BveI ACCTGC 1 cut(s) 207
Cac8I GCNNGC 4 cut(s) 89, 493, 786, 1058
CfoI GCGC 1 cut(s) 1087
Cfr10I RCCGGY 1 cut(s) 295
Cfr13I GGNCC 6 cut(s) 431, 494, 566, 693, 770, 791
CseI GACGC 2 cut(s) 599, 1091
Csp6I GTAC 3 cut(s) 154, 481, 715
CspAI ACCGGT 1 cut(s) 295
CspCI CAANNNNNGTGG 2 cut(s) 748, 783
CviAII CATG 5 cut(s) 202, 596, 690, 710, 844
CviQI GTAC 3 cut(s) 154, 481, 715
DdeI CTNAG 4 cut(s) 324, 420, 477, 971
DpnI GATC 4 cut(s) 30, 415, 554, 585
DpnII GATC 4 cut(s) 28, 413, 552, 583
EaeI YGGCCR 2 cut(s) 187, 358
Eam1104I CTCTTC 2 cut(s) 133, 994
EarI CTCTTC 2 cut(s) 133, 994
EciI GGCGGA 1 cut(s) 933
Eco130I CCWWGG 3 cut(s) 548, 689, 965
Eco24I GRGCYC 1 cut(s) 965
Eco47I GGWCC 3 cut(s) 431, 566, 791
Eco91I GGTNACC 1 cut(s) 53
EcoNI CCTNNNNNAGG 2 cut(s) 214, 607
EcoO65I GGTNACC 1 cut(s) 53
EcoRI GAATTC 2 cut(s) 141, 397
EcoRII CCWGG 2 cut(s) 500, 868
EcoT14I CCWWGG 3 cut(s) 548, 689, 965
EcoT22I ATGCAT 1 cut(s) 683
EcoT38I GRGCYC 1 cut(s) 965
ErhI CCWWGG 3 cut(s) 548, 689, 965
FaeI CATG 5 cut(s) 205, 599, 693, 713, 847
FaqI GGGAC 2 cut(s) 505, 728
FatI CATG 5 cut(s) 201, 595, 689, 709, 843
Fnu4HI GCNGC 1 cut(s) 190
FokI GGATG 4 cut(s) 92, 121, 484, 1047
FriOI GRGCYC 1 cut(s) 965
Fsp4HI GCNGC 1 cut(s) 190
FspBI CTAG 2 cut(s) 549, 1096
GlaI GCGC 1 cut(s) 1086
GluI GCNGC 1 cut(s) 190
GsaI CCCAGC 1 cut(s) 8
GsuI CTGGAG 3 cut(s) 891, 941, 1008
HaeIII GGCC 5 cut(s) 189, 360, 495, 695, 772
HapII CCGG 5 cut(s) 296, 348, 361, 587, 674
HgaI GACGC 2 cut(s) 599, 1091
HhaI GCGC 1 cut(s) 1087
Hin1II CATG 5 cut(s) 205, 599, 693, 713, 847
Hin6I GCGC 1 cut(s) 1085
HinP1I GCGC 1 cut(s) 1085
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HinfI GANTC 3 cut(s) 235, 820, 1091
HpaI GTTAAC 1 cut(s) 229
HpaII CCGG 5 cut(s) 296, 348, 361, 587, 674
HphI GGTGA 2 cut(s) 476, 616
Hpy166II GTNNAC 3 cut(s) 229, 893, 929
Hpy188I TCNGA 7 cut(s) 167, 342, 403, 421, 460, 777, 974
Hpy188III TCNNGA 4 cut(s) 138, 587, 700, 958
Hpy8I GTNNAC 3 cut(s) 229, 893, 929
HpyAV CCTTC 3 cut(s) 112, 706, 908
HpyCH4III ACNGT 2 cut(s) 153, 926
HpyCH4IV ACGT 1 cut(s) 511
HpyCH4V TGCA 3 cut(s) 216, 278, 681
HpyF3I CTNAG 4 cut(s) 324, 420, 477, 971
HpySE526I ACGT 1 cut(s) 511
Hsp92II CATG 5 cut(s) 205, 599, 693, 713, 847
HspAI GCGC 1 cut(s) 1085
Kpn2I TCCGGA 1 cut(s) 586
KspAI GTTAAC 1 cut(s) 229
Kzo9I GATC 4 cut(s) 28, 413, 552, 583
LmnI GCTCC 1 cut(s) 543
LweI GCATC 1 cut(s) 1069
MaeI CTAG 2 cut(s) 549, 1096
MaeII ACGT 1 cut(s) 511
MaeIII GTNAC 5 cut(s) 53, 464, 622, 874, 1079
MalI GATC 4 cut(s) 30, 415, 554, 585
MboI GATC 4 cut(s) 28, 413, 552, 583
MboII GAAGA 4 cut(s) 38, 120, 292, 1011
MfeI CAATTG 1 cut(s) 181
MflI RGATCY 4 cut(s) 28, 413, 552, 583
MhlI GDGCHC 5 cut(s) 201, 426, 445, 860, 965
MluCI AATT 8 cut(s) 141, 181, 265, 391, 397, 448, 810, 951
MmeI TCCRAC 2 cut(s) 133, 365
Mph1103I ATGCAT 1 cut(s) 683
MroI TCCGGA 1 cut(s) 586
MroXI GAANNNNTTC 1 cut(s) 681
MseI TTAA 3 cut(s) 228, 255, 780
MslI CAYNNNNRTG 2 cut(s) 836, 863
MspI CCGG 5 cut(s) 296, 348, 361, 587, 674
MspR9I CCNGG 3 cut(s) 502, 674, 870
MunI CAATTG 1 cut(s) 181
Mva1269I GAATGC 2 cut(s) 681, 683
MvaI CCWGG 2 cut(s) 502, 870
MvnI CGCG 1 cut(s) 1085
NciI CCSGG 1 cut(s) 674
NcoI CCATGG 1 cut(s) 689
NdeII GATC 4 cut(s) 28, 413, 552, 583
NlaIII CATG 5 cut(s) 205, 599, 693, 713, 847
NlaIV GGNNCC 6 cut(s) 415, 539, 554, 568, 585, 601
NmuCI GTSAC 4 cut(s) 464, 622, 874, 1079
NsiI ATGCAT 1 cut(s) 683
NspI RCATGY 1 cut(s) 205
OliI CACNNNNGTG 1 cut(s) 836
PciI ACATGT 1 cut(s) 201
PctI GAATGC 2 cut(s) 681, 683
PdmI GAANNNNTTC 1 cut(s) 681
PfeI GAWTC 3 cut(s) 235, 820, 1091
PinAI ACCGGT 1 cut(s) 295
PkrI GCNGC 1 cut(s) 191
Ppu21I YACGTR 1 cut(s) 512
PscI ACATGT 1 cut(s) 201
Psp6I CCWGG 2 cut(s) 500, 868
PspEI GGTNACC 1 cut(s) 53
PspFI CCCAGC 1 cut(s) 4
PspGI CCWGG 2 cut(s) 500, 868
PspN4I GGNNCC 6 cut(s) 415, 539, 554, 568, 585, 601
PspPI GGNCC 6 cut(s) 431, 494, 566, 693, 770, 791
PsrI GAACNNNNNNTAC 2 cut(s) 38, 70
PsuI RGATCY 4 cut(s) 28, 413, 552, 583
RsaI GTAC 3 cut(s) 155, 482, 716
RsaNI GTAC 3 cut(s) 154, 481, 715
RseI CAYNNNNRTG 2 cut(s) 836, 863
SaqAI TTAA 3 cut(s) 228, 255, 780
SatI GCNGC 1 cut(s) 190
Sau3AI GATC 4 cut(s) 28, 413, 552, 583
Sau96I GGNCC 6 cut(s) 431, 494, 566, 693, 770, 791
ScaI AGTACT 1 cut(s) 716
ScrFI CCNGG 3 cut(s) 502, 674, 870
SduI GDGCHC 5 cut(s) 201, 426, 445, 860, 965
SfaNI GCATC 1 cut(s) 1069
SfcI CTRYAG 2 cut(s) 149, 1041
SinI GGWCC 3 cut(s) 431, 566, 791
SmiMI CAYNNNNRTG 2 cut(s) 836, 863
SmlI CTYRAG 2 cut(s) 64, 908
SmoI CTYRAG 2 cut(s) 64, 908
Sse9I AATT 8 cut(s) 141, 181, 265, 391, 397, 448, 810, 951
SsiI CCGC 3 cut(s) 61, 190, 918
SspI AATATT 1 cut(s) 354
SspMI CTAG 2 cut(s) 549, 1096
StyD4I CCNGG 3 cut(s) 500, 672, 868
StyI CCWWGG 3 cut(s) 548, 689, 965
TaaI ACNGT 2 cut(s) 153, 926
TaiI ACGT 1 cut(s) 514
TaqI TCGA 1 cut(s) 78
TaqII GACCGA 1 cut(s) 1066
TasI AATT 8 cut(s) 141, 181, 265, 391, 397, 448, 810, 951
TatI WGTACW 1 cut(s) 714
TauI GCSGC 1 cut(s) 192
TfiI GAWTC 3 cut(s) 235, 820, 1091
Tru1I TTAA 3 cut(s) 228, 255, 780
Tru9I TTAA 3 cut(s) 228, 255, 780
TscAI CASTG 2 cut(s) 625, 991
TseFI GTSAC 4 cut(s) 464, 622, 874, 1079
Tsp45I GTSAC 4 cut(s) 464, 622, 874, 1079
TspDTI ATGAA 1 cut(s) 94
TspRI CASTG 2 cut(s) 625, 991
VpaK11BI GGWCC 3 cut(s) 431, 566, 791
XagI CCTNNNNNAGG 2 cut(s) 214, 607
XapI RAATTY 4 cut(s) 141, 391, 397, 951
XceI RCATGY 1 cut(s) 205
XmaJI CCTAGG 1 cut(s) 548
XmnI GAANNNNTTC 1 cut(s) 681
XspI CTAG 2 cut(s) 549, 1096
ZrmI AGTACT 1 cut(s) 716
Zsp2I ATGCAT 1 cut(s) 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.