Rh3DG179900

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000073
Physical Location & Seq
Forward (+)
16039595 .. 16050193
10599 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG179900.1

Sequence Viewer

Length: 1998 bp
ATGGAGTACTCACCACCAAAGTCCCCTATTTCTACCTTATCTCCGCCCCCATCACCCAAAAATACCCCTACTTCTACCTTCTTTCCGCCACCATCTCCCAACAAATCCTTCCCAGATAATCCTCCGATTCATACCTCAGATGCATTTCCTGAGGGTGAACTCTTTATCCCGCTACCTCCACCTACTCAACCTACTCAAGGCCGTGATACTCAACTTGTTGGTGCGATCATAGTTAATCGTACCCTCCATGCCCCTTCAGTCATTCGGATTCTTACTACTGCTTGGTCTGAGATTGGACGTTTTCGGGTGGACTTGCTGGGCGGTACCTCTATCTTTTCTATCACAGCTCCTTCTGAGGCTGCAGCTGATCAGGTGCTTGAGCGTGGTCCGTGGTCAGTTATGGGTAGCAACATGGCTATTCATCCTTGGCCTATGACCAGCAGATTGGAGGATATCCCTCTCAACCTCATTAAATTTTGGATTCAGATTCATGGGTTACAGAGGGGTCACATGACTGAAGAAATTGCAAAAATGATCGGTGCTCAAGTGGGGACAGTTCTCTCTGTTGATGATCCTAACTCCCCGTCTGGCAATCCTGGTTATCTCCATGTTAGGGTTCAGGTAGACTCTCGGGCCCCTCTTTCTCCTGGTTTCTGGTTTAGCAACAGTGACACAGAAGCAACTTGGGCAGAAATTCGGTATGAGAGATTGTCCGATTTCTGTTATCGTTGTGGTCATTTGGGCCATACCATCAGTACTTGTATTTTCAGGAGACATGCATCAACTTATCACCTGGGCCCTTGGATGGCAGTTCTTACTCCTCGCAGTCTTCCTCCTGACAATCAACAAAATTGGGATCGCTTCCCTCATCAGGCTTTTGAGCACAAACAAAGTAGGTACGTTGAACGCAGGTATCAGCAGAATGGCACTTATGTTTTCCGTCCGAGGAACACTATGCCGGTTACTACAGCTGGGTACGGTTCCCTCTCCGGCAACCCTATACAGCAGATAGGTGCCCTAATTCTTGCCCATCCACAACAAGGCAGGTGGCAGCCAGCTGTCCCTTCCACATATGCTACATCTTCAGAAGCTTGTCCTTCTGGAACGAATACCCTCAACAAAGGTAAAGCCAAATTTGATGACTGGGTAGTTCCATCTCCTTCTATGTCGCCACCTTATCTAATTTCTCCTGATGTAGAGGACATGCAACTGGCAGTTTCCCTTTCCTTAGCTGAGCTGGCGGACACATCCACAACACATCATCGTCTCACTCCACCACCATTGGACCCATATCTTCAGATGGGCTTTCAGTCTGACCCATTAATCTTGCAAGCTATGTTAGCTCATCAGGAACCGTCACCTCCAATAATCCCACCAGTCCCACTCTCAACAAATATCCACCCTGAAGTTTTTGCTGCAATTCCACCAACAATCCCTCCGTTTGGGTCTCTTGTTATACTTGCTCAGCAATTCCAGTTCCTCAAATTACTTAAAAGGCTGCAAGATGATTTGGCTGAGGATTTTTGTCAAACCAAGCGCCACCGCACTATAGTTTCCGATGATAGTACTCGGGTGGATCAGGCTATTCCCTCCCGAGTCCCTACTAAACCACATCGTGGGTGTCCTCTGTCCGCTACTGCCTCTGGTAAGGCCAAGGGGTTGGCTCGACGCGGTCGTCCAAAGAAGATTCAAACTTCTAATGTCCTACTGCTCCGGCTACTGTTGAATAGGAAGACTGAGGTGAAGATTGCGGATTCTGCAGATATTGAATCAAATTCACTGTTCACTGCAGATTTTTCAACATATGATAGTGTTTATAAAGTCAGATTTCTATATGCAGCTGTACCGGTACATTCAAGAATCGGCAAGAATCATCAAGTTTTTCATCAAGATGAGGGGCCAGGTAATGTGAAAGCTAATGCAGCGGATTATGAGAGTGCTGAAGCTGATCAACGAAACCTGCTATATAAAGCTAATGAAACAAAATGTGCAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4 zf-RING_2

Protein Analysis

665

Amino Acids

73.61

Weight (kDa)

8.34

Isoelectric Point (pI)

48.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 77 - 149 2.7e-08 Domain of unknown function (DUF4283)
zf-CCHC_4 PF14392 224 - 254 4.4e-07 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1818
AarI CACCTGC 1 cut(s) 1035
AasI GACNNNNNNGTC 1 cut(s) 1674
Acc36I ACCTGC 3 cut(s) 900, 1035, 1968
Acc65I GGTACC 1 cut(s) 323
AccB1I GGYRCC 2 cut(s) 323, 1013
AccB7I CCANNNNNTGG 1 cut(s) 1616
AccI GTMKAC 1 cut(s) 624
AccII CGCG 1 cut(s) 1671
AclWI GGATC 3 cut(s) 566, 864, 1584
AcsI RAATTY 4 cut(s) 473, 693, 1133, 1774
AcuI CTGAAG 6 cut(s) 240, 537, 1068, 1280, 1425, 1962
AdeI CACNNNGTG 1 cut(s) 1616
AfaI GTAC 9 cut(s) 8, 241, 325, 757, 899, 977, 1567, 1845, 1851
AfiI CCNNNNNNNGG 7 cut(s) 197, 613, 805, 871, 1040, 1442, 1616
AgeI ACCGGT 1 cut(s) 1846
AgsI TTSAA 6 cut(s) 905, 1691, 1726, 1769, 1800, 1857
AjnI CCWGG 4 cut(s) 595, 646, 792, 1900
AjuI GAANNNNNNNTTGG 2 cut(s) 92, 124
AloI GAACNNNNNNTCC 2 cut(s) 150, 182
Alw21I GWGCWC 2 cut(s) 544, 885
Alw26I GTCTC 3 cut(s) 766, 1271, 1452
AlwI GGATC 3 cut(s) 566, 864, 1584
Ama87I CYCGRG 3 cut(s) 630, 1569, 1593
AoxI GGCC 7 cut(s) 199, 428, 633, 742, 796, 1650, 1898
ApaI GGGCCC 2 cut(s) 637, 800
ApeKI GCWGC 7 cut(s) 359, 362, 1051, 1415, 1498, 1838, 1922
ApoI RAATTY 4 cut(s) 473, 693, 1133, 1774
AseI ATTAAT 1 cut(s) 1322
AsiGI ACCGGT 1 cut(s) 1846
Asp718I GGTACC 1 cut(s) 323
AspLEI GCGC 1 cut(s) 1539
AspS9I GGNCC 8 cut(s) 386, 633, 634, 742, 796, 797, 1285, 1898
AsuHPI GGTGA 6 cut(s) 3, 45, 167, 782, 1350, 1753
AvaI CYCGRG 3 cut(s) 630, 1569, 1593
AvaII GGWCC 2 cut(s) 386, 1285
AxyI CCTNAGG 1 cut(s) 150
BaeGI GKGCMC 3 cut(s) 637, 800, 1018
BaeI ACNNNNGTAYC 2 cut(s) 896, 929
BanI GGYRCC 2 cut(s) 323, 1013
BanII GRGCYC 2 cut(s) 637, 800
BbsI GAAGAC 2 cut(s) 821, 1739
Bbv12I GWGCWC 2 cut(s) 544, 885
BbvCI CCTCAGC 1 cut(s) 1515
BbvI GCAGC 7 cut(s) 346, 374, 1063, 1402, 1485, 1850, 1934
BccI CCATC 7 cut(s) 58, 100, 758, 799, 1038, 1162, 1294
BceAI ACGGC 1 cut(s) 186
BciT130I CCWGG 4 cut(s) 597, 648, 794, 1902
BclI TGATCA 2 cut(s) 367, 1948
BcoDI GTCTC 3 cut(s) 766, 1271, 1452
BfmI CTRYAG 5 cut(s) 360, 966, 1548, 1758, 1788
BfoI RGCGCY 1 cut(s) 1540
BfuAI ACCTGC 3 cut(s) 900, 1035, 1968
BisI GCNGC 7 cut(s) 360, 363, 1052, 1416, 1499, 1839, 1923
BlpI GCTNAGC 2 cut(s) 1233, 1464
BlsI GCNGC 7 cut(s) 361, 364, 1053, 1417, 1500, 1840, 1924
BmcAI AGTACT 3 cut(s) 8, 757, 1567
Bme1390I CCNGG 4 cut(s) 597, 648, 794, 1902
Bme18I GGWCC 2 cut(s) 386, 1285
BmeT110I CYCGRG 3 cut(s) 630, 1569, 1593
BmgT120I GGNCC 8 cut(s) 386, 633, 634, 742, 796, 797, 1285, 1898
BmiI GGNNCC 9 cut(s) 325, 635, 636, 798, 982, 1015, 1287, 1353, 1899
BmrFI CCNGG 4 cut(s) 597, 648, 794, 1902
BmrI ACTGGG 1 cut(s) 1153
BmsI GCATC 2 cut(s) 130, 788
BmuI ACTGGG 1 cut(s) 1153
BpiI GAAGAC 2 cut(s) 821, 1739
Bpu10I CCTNAGC 2 cut(s) 1228, 1515
Bpu1102I GCTNAGC 2 cut(s) 1233, 1464
BpuEI CTTGAG 3 cut(s) 180, 398, 528
BsaI GGTCTC 1 cut(s) 1452
BsaJI CCNNGG 6 cut(s) 389, 425, 793, 800, 944, 1653
BsaWI WCCGGW 1 cut(s) 1846
BsaXI ACNNNNNCTCC 4 cut(s) 25, 55, 1420, 1450
Bsc4I CCNNNNNNNGG 7 cut(s) 197, 613, 805, 871, 1040, 1442, 1616
Bse118I RCCGGY 2 cut(s) 958, 1846
Bse1I ACTGG 4 cut(s) 1148, 1215, 1376, 1474
Bse21I CCTNAGG 1 cut(s) 150
BseBI CCWGG 4 cut(s) 597, 648, 794, 1902
BseDI CCNNGG 6 cut(s) 389, 425, 793, 800, 944, 1653
BseGI GGATG 4 cut(s) 421, 810, 1030, 1247
BseLI CCNNNNNNNGG 7 cut(s) 197, 613, 805, 871, 1040, 1442, 1616
BseMII CTCAG 8 cut(s) 141, 150, 279, 345, 1224, 1478, 1506, 1728
BseNI ACTGG 4 cut(s) 1148, 1215, 1376, 1474
BseRI GAGGAG 1 cut(s) 810
BseSI GKGCMC 3 cut(s) 637, 800, 1018
BseXI GCAGC 7 cut(s) 346, 374, 1063, 1402, 1485, 1850, 1934
BseYI CCCAGC 2 cut(s) 316, 971
Bsh1236I CGCG 1 cut(s) 1671
Bsh1285I CGRYCG 1 cut(s) 1675
BshFI GGCC 7 cut(s) 201, 430, 635, 744, 798, 1652, 1900
BshNI GGYRCC 2 cut(s) 323, 1013
BshTI ACCGGT 1 cut(s) 1846
BsiEI CGRYCG 1 cut(s) 1675
BsiHKAI GWGCWC 2 cut(s) 544, 885
BsiHKCI CYCGRG 3 cut(s) 630, 1569, 1593
BsiSI CCGG 4 cut(s) 959, 990, 1714, 1847
BslFI GGGAC 5 cut(s) 7, 565, 1046, 1364, 1583
BslI CCNNNNNNNGG 7 cut(s) 197, 613, 805, 871, 1040, 1442, 1616
BsmAI GTCTC 3 cut(s) 766, 1271, 1452
BsmBI CGTCTC 1 cut(s) 1271
BsmFI GGGAC 5 cut(s) 7, 565, 1046, 1364, 1583
BsnI GGCC 7 cut(s) 201, 430, 635, 744, 798, 1652, 1900
Bso31I GGTCTC 1 cut(s) 1452
BsoBI CYCGRG 3 cut(s) 630, 1569, 1593
Bsp120I GGGCCC 2 cut(s) 633, 796
Bsp1286I GDGCHC 5 cut(s) 544, 637, 800, 885, 1018
Bsp143I GATC 7 cut(s) 225, 367, 534, 571, 856, 1576, 1948
Bsp1720I GCTNAGC 2 cut(s) 1233, 1464
BspANI GGCC 7 cut(s) 201, 430, 635, 744, 798, 1652, 1900
BspCNI CTCAG 8 cut(s) 142, 149, 280, 346, 1225, 1477, 1507, 1729
BspFNI CGCG 1 cut(s) 1671
BspLI GGNNCC 9 cut(s) 325, 635, 636, 798, 982, 1015, 1287, 1353, 1899
BspMAI CTGCAG 3 cut(s) 364, 1762, 1792
BspMI ACCTGC 3 cut(s) 900, 1035, 1968
BspPI GGATC 3 cut(s) 566, 864, 1584
BspT107I GGYRCC 2 cut(s) 323, 1013
BspTNI GGTCTC 1 cut(s) 1452
BsrFI RCCGGY 2 cut(s) 958, 1846
BsrI ACTGG 4 cut(s) 1148, 1215, 1376, 1474
BssAI RCCGGY 2 cut(s) 958, 1846
BssECI CCNNGG 6 cut(s) 389, 425, 793, 800, 944, 1653
BssMI GATC 7 cut(s) 225, 367, 534, 571, 856, 1576, 1948
BssT1I CCWWGG 3 cut(s) 425, 800, 1653
Bst2UI CCWGG 4 cut(s) 597, 648, 794, 1902
Bst4CI ACNGT 6 cut(s) 556, 668, 980, 1356, 1722, 1782
BstC8I GCNNGC 3 cut(s) 1056, 1239, 1332
BstDEI CTNAG 9 cut(s) 136, 150, 288, 354, 1228, 1233, 1464, 1515, 1737
BstDSI CCRYGG 1 cut(s) 389
BstENI CCTNNNNNAGG 1 cut(s) 195
BstF5I GGATG 4 cut(s) 421, 810, 1030, 1247
BstFNI CGCG 1 cut(s) 1671
BstH2I RGCGCY 1 cut(s) 1540
BstHHI GCGC 1 cut(s) 1539
BstKTI GATC 7 cut(s) 228, 370, 537, 574, 859, 1579, 1951
BstMAI GTCTC 3 cut(s) 766, 1271, 1452
BstMBI GATC 7 cut(s) 225, 367, 534, 571, 856, 1576, 1948
BstMCI CGRYCG 1 cut(s) 1675
BstMWI GCNNNNNNNGC 5 cut(s) 686, 1238, 1340, 1757, 1922
BstNI CCWGG 4 cut(s) 597, 648, 794, 1902
BstNSI RCATGY 2 cut(s) 779, 1207
BstSCI CCNGG 4 cut(s) 595, 646, 792, 1900
BstSFI CTRYAG 5 cut(s) 360, 966, 1548, 1758, 1788
BstSLI GKGCMC 3 cut(s) 637, 800, 1018
BstUI CGCG 1 cut(s) 1671
BstV1I GCAGC 7 cut(s) 346, 374, 1063, 1402, 1485, 1850, 1934
BstV2I GAAGAC 2 cut(s) 821, 1739
BstXI CCANNNNNNTGG 2 cut(s) 445, 1660
Bsu36I CCTNAGG 1 cut(s) 150
BsuRI GGCC 7 cut(s) 201, 430, 635, 744, 798, 1652, 1900
BtgI CCRYGG 1 cut(s) 389
BtsCI GGATG 4 cut(s) 421, 810, 1030, 1247
BtsI GCAGTG 1 cut(s) 1785
BtsIMutI CAGTG 3 cut(s) 673, 1778, 1785
BveI ACCTGC 3 cut(s) 900, 1035, 1968
Cac8I GCNNGC 3 cut(s) 1056, 1239, 1332
CfoI GCGC 1 cut(s) 1539
Cfr10I RCCGGY 2 cut(s) 958, 1846
Cfr13I GGNCC 8 cut(s) 386, 633, 634, 742, 796, 797, 1285, 1898
CseI GACGC 1 cut(s) 1677
Csp6I GTAC 9 cut(s) 7, 240, 324, 756, 898, 976, 1566, 1844, 1850
CspAI ACCGGT 1 cut(s) 1846
CspCI CAANNNNNGTGG 4 cut(s) 1028, 1063, 1263, 1298
CviAII CATG 7 cut(s) 248, 412, 491, 511, 608, 776, 1204
CviQI GTAC 9 cut(s) 7, 240, 324, 756, 898, 976, 1566, 1844, 1850
DdeI CTNAG 9 cut(s) 136, 150, 288, 354, 1228, 1233, 1464, 1515, 1737
DpnI GATC 7 cut(s) 227, 369, 536, 573, 858, 1578, 1950
DpnII GATC 7 cut(s) 225, 367, 534, 571, 856, 1576, 1948
DraIII CACNNNGTG 1 cut(s) 1616
DrdI GACNNNNNNGTC 1 cut(s) 1674
DseDI GACNNNNNNGTC 1 cut(s) 1674
EciI GGCGGA 3 cut(s) 33, 75, 1256
Eco130I CCWWGG 3 cut(s) 425, 800, 1653
Eco24I GRGCYC 2 cut(s) 637, 800
Eco31I GGTCTC 1 cut(s) 1452
Eco32I GATATC 1 cut(s) 454
Eco47I GGWCC 2 cut(s) 386, 1285
Eco57I CTGAAG 6 cut(s) 240, 537, 1068, 1280, 1425, 1962
Eco81I CCTNAGG 1 cut(s) 150
Eco88I CYCGRG 3 cut(s) 630, 1569, 1593
EcoNI CCTNNNNNAGG 1 cut(s) 195
EcoO109I RGGNCCY 2 cut(s) 634, 797
EcoRII CCWGG 4 cut(s) 595, 646, 792, 1900
EcoRV GATATC 1 cut(s) 454
EcoT14I CCWWGG 3 cut(s) 425, 800, 1653
EcoT22I ATGCAT 2 cut(s) 145, 781
EcoT38I GRGCYC 2 cut(s) 637, 800
ErhI CCWWGG 3 cut(s) 425, 800, 1653
Esp3I CGTCTC 1 cut(s) 1271
FaeI CATG 7 cut(s) 251, 415, 494, 514, 611, 779, 1207
FaqI GGGAC 5 cut(s) 7, 565, 1046, 1364, 1583
FatI CATG 7 cut(s) 247, 411, 490, 510, 607, 775, 1203
FauI CCCGC 1 cut(s) 177
FauNDI CATATG 2 cut(s) 1072, 1804
FbaI TGATCA 2 cut(s) 367, 1948
FblI GTMKAC 1 cut(s) 624
Fnu4HI GCNGC 7 cut(s) 360, 363, 1052, 1416, 1499, 1839, 1923
FokI GGATG 4 cut(s) 408, 817, 1017, 1234
FriOI GRGCYC 2 cut(s) 637, 800
Fsp4HI GCNGC 7 cut(s) 360, 363, 1052, 1416, 1499, 1839, 1923
GlaI GCGC 1 cut(s) 1538
GluI GCNGC 7 cut(s) 360, 363, 1052, 1416, 1499, 1839, 1923
GsaI CCCAGC 2 cut(s) 320, 975
HaeII RGCGCY 1 cut(s) 1540
HaeIII GGCC 7 cut(s) 201, 430, 635, 744, 798, 1652, 1900
HapII CCGG 4 cut(s) 959, 990, 1714, 1847
HgaI GACGC 1 cut(s) 1677
HhaI GCGC 1 cut(s) 1539
Hin1II CATG 7 cut(s) 251, 415, 494, 514, 611, 779, 1207
Hin6I GCGC 1 cut(s) 1537
HinP1I GCGC 1 cut(s) 1537
HindIII AAGCTT 1 cut(s) 1089
HpaII CCGG 4 cut(s) 959, 990, 1714, 1847
HphI GGTGA 6 cut(s) 3, 45, 167, 782, 1350, 1753
Hpy166II GTNNAC 4 cut(s) 158, 310, 625, 1785
Hpy188III TCNNGA 9 cut(s) 149, 769, 836, 1101, 1190, 1349, 1593, 1857, 1889
Hpy8I GTNNAC 4 cut(s) 158, 310, 625, 1785
Hpy99I CGWCG 1 cut(s) 1671
HpyAV CCTTC 7 cut(s) 88, 118, 264, 360, 1074, 1107, 1170
HpyCH4III ACNGT 6 cut(s) 556, 668, 980, 1356, 1722, 1782
HpyCH4IV ACGT 2 cut(s) 298, 900
HpyF10VI GCNNNNNNNGC 5 cut(s) 686, 1238, 1340, 1757, 1922
HpyF3I CTNAG 9 cut(s) 136, 150, 288, 354, 1228, 1233, 1464, 1515, 1737
HpySE526I ACGT 2 cut(s) 298, 900
Hsp92II CATG 7 cut(s) 251, 415, 494, 514, 611, 779, 1207
HspAI GCGC 1 cut(s) 1537
KpnI GGTACC 1 cut(s) 327
Ksp22I TGATCA 2 cut(s) 367, 1948
Kzo9I GATC 7 cut(s) 225, 367, 534, 571, 856, 1576, 1948
LmnI GCTCC 2 cut(s) 352, 1716
Lsp1109I GCAGC 7 cut(s) 346, 374, 1063, 1402, 1485, 1850, 1934
LweI GCATC 2 cut(s) 130, 788
MaeII ACGT 2 cut(s) 298, 900
MaeIII GTNAC 5 cut(s) 495, 506, 668, 961, 1356
MalI GATC 7 cut(s) 227, 369, 536, 573, 858, 1578, 1950
MboI GATC 7 cut(s) 225, 367, 534, 571, 856, 1576, 1948
MboII GAAGA 7 cut(s) 530, 821, 1074, 1286, 1696, 1744, 1756
MhlI GDGCHC 5 cut(s) 544, 637, 800, 885, 1018
MlyI GAGTC 2 cut(s) 620, 1605
Mph1103I ATGCAT 2 cut(s) 145, 781
MseI TTAA 4 cut(s) 234, 471, 1322, 1491
MslI CAYNNNNRTG 1 cut(s) 1890
MspA1I CMGCKG 5 cut(s) 365, 971, 1058, 1841, 1925
MspI CCGG 4 cut(s) 959, 990, 1714, 1847
MspR9I CCNGG 4 cut(s) 597, 648, 794, 1902
MvaI CCWGG 4 cut(s) 597, 648, 794, 1902
MvnI CGCG 1 cut(s) 1671
MwoI GCNNNNNNNGC 5 cut(s) 686, 1238, 1340, 1757, 1922
NdeI CATATG 2 cut(s) 1072, 1804
NdeII GATC 7 cut(s) 225, 367, 534, 571, 856, 1576, 1948
NlaIII CATG 7 cut(s) 251, 415, 494, 514, 611, 779, 1207
NlaIV GGNNCC 9 cut(s) 325, 635, 636, 798, 982, 1015, 1287, 1353, 1899
NmuCI GTSAC 3 cut(s) 506, 668, 1356
NsiI ATGCAT 2 cut(s) 145, 781
NspI RCATGY 2 cut(s) 779, 1207
PaqCI CACCTGC 1 cut(s) 1035
PcsI WCGNNNNNNNCGW 1 cut(s) 1672
PfeI GAWTC 9 cut(s) 127, 268, 481, 487, 1687, 1754, 1769, 1860, 1870
PflFI GACNNNGTC 1 cut(s) 1671
PflMI CCANNNNNTGG 1 cut(s) 1616
PinAI ACCGGT 1 cut(s) 1846
PkrI GCNGC 7 cut(s) 361, 364, 1053, 1417, 1500, 1840, 1924
PleI GAGTC 2 cut(s) 620, 1604
PpsI GAGTC 2 cut(s) 620, 1604
PshBI ATTAAT 1 cut(s) 1322
PsiI TTATAA 1 cut(s) 1818
Psp6I CCWGG 4 cut(s) 595, 646, 792, 1900
PspFI CCCAGC 2 cut(s) 316, 971
PspGI CCWGG 4 cut(s) 595, 646, 792, 1900
PspN4I GGNNCC 9 cut(s) 325, 635, 636, 798, 982, 1015, 1287, 1353, 1899
PspOMI GGGCCC 2 cut(s) 633, 796
PspPI GGNCC 8 cut(s) 386, 633, 634, 742, 796, 797, 1285, 1898
PstI CTGCAG 3 cut(s) 364, 1762, 1792
PsyI GACNNNGTC 1 cut(s) 1671
PvuII CAGCTG 4 cut(s) 365, 971, 1058, 1841
RsaI GTAC 9 cut(s) 8, 241, 325, 757, 899, 977, 1567, 1845, 1851
RsaNI GTAC 9 cut(s) 7, 240, 324, 756, 898, 976, 1566, 1844, 1850
RseI CAYNNNNRTG 1 cut(s) 1890
SaqAI TTAA 4 cut(s) 234, 471, 1322, 1491
SatI GCNGC 7 cut(s) 360, 363, 1052, 1416, 1499, 1839, 1923
Sau3AI GATC 7 cut(s) 225, 367, 534, 571, 856, 1576, 1948
Sau96I GGNCC 8 cut(s) 386, 633, 634, 742, 796, 797, 1285, 1898
ScaI AGTACT 3 cut(s) 8, 757, 1567
SchI GAGTC 2 cut(s) 620, 1605
ScrFI CCNGG 4 cut(s) 597, 648, 794, 1902
SduI GDGCHC 5 cut(s) 544, 637, 800, 885, 1018
SfaNI GCATC 2 cut(s) 130, 788
SfcI CTRYAG 5 cut(s) 360, 966, 1548, 1758, 1788
SinI GGWCC 2 cut(s) 386, 1285
SmiMI CAYNNNNRTG 1 cut(s) 1890
SmlI CTYRAG 3 cut(s) 195, 377, 543
SmoI CTYRAG 3 cut(s) 195, 377, 543
StyD4I CCNGG 4 cut(s) 595, 646, 792, 1900
StyI CCWWGG 3 cut(s) 425, 800, 1653
TaaI ACNGT 6 cut(s) 556, 668, 980, 1356, 1722, 1782
TaiI ACGT 2 cut(s) 301, 903
TaqI TCGA 1 cut(s) 1666
TatI WGTACW 3 cut(s) 6, 755, 1565
TfiI GAWTC 9 cut(s) 127, 268, 481, 487, 1687, 1754, 1769, 1860, 1870
Tru1I TTAA 4 cut(s) 234, 471, 1322, 1491
Tru9I TTAA 4 cut(s) 234, 471, 1322, 1491
TscAI CASTG 3 cut(s) 673, 1785, 1792
TseFI GTSAC 3 cut(s) 506, 668, 1356
TseI GCWGC 7 cut(s) 359, 362, 1051, 1415, 1498, 1838, 1922
Tsp45I GTSAC 3 cut(s) 506, 668, 1356
TspDTI ATGAA 5 cut(s) 119, 410, 479, 1874, 1992
TspGWI ACGGA 3 cut(s) 378, 929, 1428
TspRI CASTG 3 cut(s) 673, 1785, 1792
Tth111I GACNNNGTC 1 cut(s) 1671
Van91I CCANNNNNTGG 1 cut(s) 1616
VpaK11BI GGWCC 2 cut(s) 386, 1285
VspI ATTAAT 1 cut(s) 1322
XagI CCTNNNNNAGG 1 cut(s) 195
XapI RAATTY 4 cut(s) 473, 693, 1133, 1774
XceI RCATGY 2 cut(s) 779, 1207
XmiI GTMKAC 1 cut(s) 624
ZrmI AGTACT 3 cut(s) 8, 757, 1567
Zsp2I ATGCAT 2 cut(s) 145, 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.