Rh6AG051400

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000073
Physical Location & Seq
Reverse (-)
7376631 .. 7390062
13432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG051400.1

Sequence Viewer

Length: 1509 bp
ATGGGGAAACCAACCCCAAGACGCTACAAAATCTCATTTAAGGAACCTCATCGCTTCCAGATCTCTGAAGCTTTGTTATTGTTCCTACTTCTCATTCTAGCTCAGACAGATAGTTCATTTCCTACTCCCTACTTAACTGAGATGGAAGAAGCACATAAATCTCCTGATAACCTAGTTGTGCATATGAGGAGGAAATTATCATTATATGATCTGGACAGAAAGGTTAGATTGAGTGCTGTTATCTTTGCTGACAAGATCCCAAACAAGGTAACTATTTGTAACACTATGAGAACTGTTCTAGCAAGGTTTGGTACTACATGGGTGATTGCTAGCAATGAAAGGGATCCAAACGACAGGATGTTCTCTGTTACTGCAGAGGATGTTGATTCTGCGAAGGCTATTCTAGACGGTTCCCCATGGTCAATTTTGAGATTCTCTGTACATTTCCAAGAATGGCCTGAGACTCTTGCTATTGAGGAACTTCAGTGCAATCAGATAGCCTTTTGGGTGCAAGTCAGGGGAGTTCCACCCTATATGTTTGATGTGGAAAATGTTAGGGAGATGATTGATCATTTTGGAGAGTTCATTAAAATGGACGACCCCCTGGAAAGTGAAGAAGGCACCTATAGTTTTCTCCGAGTCAGAGTCCTTCTTGATGCTCGGGATCCTCTTCCTACAGGCTATGAGCTTCCAAGAGAGGATGGAACCAAGAAATGGGTTAGTTTTGCTTTCGAGAAATTGTCTGATTTTTGCTATGTTTGTGGGAGATTAGGACATACAGATTTACCAAAAGCTCCATGCCCCCATGGAGTTGATCCAGAGAATGAAAATGAGTATGGTGATTGGCTTCGTGCATTACCACCTCGAAAGCAAATCAGGAATGAAAATCCACAGACTAAGACGGCAAGTGGTCAGAATAGAAGGAGGTTTCCCGGCCAAACTATCCAACCTTTGGAAAGCAGTGACAACGGCCAAAATTCACAACCCCAACGAGCCTCTTATCACATCAATGAACTTCACATACAGCATTCAGCCCCCTCTGTCAGAATACAAATTCCTGACACAAGTGCCCATGCCGCTATTGTCAACCAATGTGAAAGCAACTACACAAAGGCTCTGCCAAGGGAACTTTCAAGGTACCCCACTACCCCAACTATATCAAACCTTAATAATATTTCCATGCCCTCCCCTCCACCTGGATTTGATCCCCTACCAAACAGTGTCTCAAGGACCATTTTCCTAGAACAAACTCAAAATGTGACAAATAGGAGCGGTTTTGGCTACCCATGGTTTTTTAATCAGGGTAACAACTCTGGTAATGATAATGGCACCTTCTACGCGAAGACCTTCATCTCAAGCAGTAGCAATGGCCAAAAGAATGAGGGAAATTCAGCTGAGAGGGACAAGGTCTACCAATACCAAGCGATCCAATGGAGCAACATCAAGGGGAACTTCAGTACAAGCTGCATCAAAGTTGTCATTGAAACTACAAAAGAGATTGAAGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

502

Amino Acids

57.15

Weight (kDa)

6.17

Isoelectric Point (pI)

39.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 218 - 261 5.9e-09 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1137
AccB1I GGYRCC 3 cut(s) 620, 1137, 1328
AccB7I CCANNNNNTGG 2 cut(s) 714, 952
AccBSI CCGCTC 1 cut(s) 1272
AccI GTMKAC 1 cut(s) 1410
AccII CGCG 1 cut(s) 1340
AciI CCGC 2 cut(s) 1077, 1272
AclWI GGATC 8 cut(s) 250, 338, 351, 659, 672, 809, 1199, 1420
AcoI YGGCCR 3 cut(s) 934, 970, 1369
AcsI RAATTY 3 cut(s) 976, 1053, 1387
AcuI CTGAAG 3 cut(s) 87, 467, 1438
AfaI GTAC 4 cut(s) 313, 441, 1139, 1459
AfiI CCNNNNNNNGG 4 cut(s) 265, 714, 952, 1196
AgsI TTSAA 3 cut(s) 1134, 1484, 1502
AjnI CCWGG 2 cut(s) 603, 1195
AjuI GAANNNNNNNTTGG 2 cut(s) 1114, 1146
AluBI AGCT 6 cut(s) 71, 101, 688, 794, 1394, 1464
AluI AGCT 6 cut(s) 71, 101, 688, 794, 1394, 1464
Alw26I GTCTC 2 cut(s) 455, 1228
AlwI GGATC 8 cut(s) 250, 338, 351, 659, 672, 809, 1199, 1420
Ama87I CYCGRG 1 cut(s) 660
AoxI GGCC 4 cut(s) 455, 934, 970, 1369
ApeKI GCWGC 1 cut(s) 1464
ApoI RAATTY 3 cut(s) 976, 1053, 1387
Asp700I GAANNNNTTC 1 cut(s) 1346
Asp718I GGTACC 1 cut(s) 1137
AspS9I GGNCC 1 cut(s) 1230
AsuC2I CCSGG 1 cut(s) 933
AsuHPI GGTGA 2 cut(s) 334, 851
AsuNHI GCTAGC 1 cut(s) 329
AvaI CYCGRG 1 cut(s) 660
AvaII GGWCC 1 cut(s) 1230
BaeGI GKGCMC 1 cut(s) 1072
BalI TGGCCA 1 cut(s) 1371
BamHI GGATCC 2 cut(s) 343, 664
BanI GGYRCC 3 cut(s) 620, 1137, 1328
BbsI GAAGAC 1 cut(s) 1349
BbvI GCAGC 1 cut(s) 1451
BccI CCATC 2 cut(s) 136, 695
BceAI ACGGC 2 cut(s) 918, 985
BciT130I CCWGG 2 cut(s) 605, 1197
BclI TGATCA 1 cut(s) 568
BcnI CCSGG 1 cut(s) 933
BcoDI GTCTC 2 cut(s) 455, 1228
BfaI CTAG 6 cut(s) 98, 173, 299, 330, 404, 1241
BfmI CTRYAG 3 cut(s) 372, 625, 675
BglII AGATCT 1 cut(s) 60
BisI GCNGC 2 cut(s) 1077, 1465
BlsI GCNGC 2 cut(s) 1078, 1466
Bme1390I CCNGG 3 cut(s) 605, 933, 1197
Bme18I GGWCC 1 cut(s) 1230
BmeT110I CYCGRG 1 cut(s) 660
BmgT120I GGNCC 1 cut(s) 1230
BmiI GGNNCC 8 cut(s) 45, 345, 412, 622, 666, 706, 1139, 1330
BmrFI CCNGG 3 cut(s) 605, 933, 1197
BmsI GCATC 2 cut(s) 646, 1476
BmtI GCTAGC 1 cut(s) 333
BpiI GAAGAC 1 cut(s) 1349
BpuEI CTTGAG 2 cut(s) 1210, 1339
BpuMI CCSGG 1 cut(s) 933
BsaJI CCNNGG 5 cut(s) 416, 603, 805, 1121, 1286
Bsc4I CCNNNNNNNGG 4 cut(s) 265, 714, 952, 1196
Bse3DI GCAATG 2 cut(s) 340, 1372
BseBI CCWGG 2 cut(s) 605, 1197
BseDI CCNNGG 5 cut(s) 416, 603, 805, 1121, 1286
BseGI GGATG 3 cut(s) 363, 385, 706
BseLI CCNNNNNNNGG 4 cut(s) 265, 714, 952, 1196
BseMI GCAATG 2 cut(s) 340, 1372
BseMII CTCAG 4 cut(s) 116, 129, 450, 1386
BseRI GAGGAG 1 cut(s) 202
BseSI GKGCMC 1 cut(s) 1072
BseXI GCAGC 1 cut(s) 1451
Bsh1236I CGCG 1 cut(s) 1340
BshFI GGCC 4 cut(s) 457, 936, 972, 1371
BshNI GGYRCC 3 cut(s) 620, 1137, 1328
BsiHKCI CYCGRG 1 cut(s) 660
BsiSI CCGG 1 cut(s) 933
BslFI GGGAC 1 cut(s) 1415
BslI CCNNNNNNNGG 4 cut(s) 265, 714, 952, 1196
BsmAI GTCTC 2 cut(s) 455, 1228
BsmFI GGGAC 1 cut(s) 1415
BsmI GAATGC 1 cut(s) 1027
BsnI GGCC 4 cut(s) 457, 936, 972, 1371
BsoBI CYCGRG 1 cut(s) 660
Bsp1286I GDGCHC 1 cut(s) 1072
Bsp1407I TGTACA 1 cut(s) 439
Bsp143I GATC 9 cut(s) 60, 208, 255, 343, 568, 664, 814, 1204, 1425
Bsp19I CCATGG 3 cut(s) 416, 805, 1286
BspACI CCGC 2 cut(s) 1077, 1272
BspANI GGCC 4 cut(s) 457, 936, 972, 1371
BspCNI CTCAG 4 cut(s) 115, 130, 451, 1387
BspFNI CGCG 1 cut(s) 1340
BspLI GGNNCC 8 cut(s) 45, 345, 412, 622, 666, 706, 1139, 1330
BspMAI CTGCAG 1 cut(s) 376
BspOI GCTAGC 1 cut(s) 333
BspPI GGATC 8 cut(s) 250, 338, 351, 659, 672, 809, 1199, 1420
BspT107I GGYRCC 3 cut(s) 620, 1137, 1328
BsrBI CCGCTC 1 cut(s) 1272
BsrDI GCAATG 2 cut(s) 340, 1372
BsrGI TGTACA 1 cut(s) 439
BssECI CCNNGG 5 cut(s) 416, 603, 805, 1121, 1286
BssMI GATC 9 cut(s) 60, 208, 255, 343, 568, 664, 814, 1204, 1425
BssT1I CCWWGG 4 cut(s) 416, 805, 1121, 1286
Bst2UI CCWGG 2 cut(s) 605, 1197
Bst4CI ACNGT 3 cut(s) 295, 410, 1220
Bst6I CTCTTC 1 cut(s) 675
BstAUI TGTACA 1 cut(s) 439
BstC8I GCNNGC 1 cut(s) 331
BstDEI CTNAG 5 cut(s) 102, 138, 459, 897, 1395
BstDSI CCRYGG 3 cut(s) 416, 805, 1286
BstF5I GGATG 3 cut(s) 363, 385, 706
BstFNI CGCG 1 cut(s) 1340
BstKTI GATC 9 cut(s) 63, 211, 258, 346, 571, 667, 817, 1207, 1428
BstMAI GTCTC 2 cut(s) 455, 1228
BstMBI GATC 9 cut(s) 60, 208, 255, 343, 568, 664, 814, 1204, 1425
BstMWI GCNNNNNNNGC 2 cut(s) 1076, 1278
BstNI CCWGG 2 cut(s) 605, 1197
BstSCI CCNGG 3 cut(s) 603, 931, 1195
BstSFI CTRYAG 3 cut(s) 372, 625, 675
BstSLI GKGCMC 1 cut(s) 1072
BstUI CGCG 1 cut(s) 1340
BstV1I GCAGC 1 cut(s) 1451
BstV2I GAAGAC 1 cut(s) 1349
BstX2I RGATCY 4 cut(s) 60, 255, 343, 664
BstYI RGATCY 4 cut(s) 60, 255, 343, 664
BsuRI GGCC 4 cut(s) 457, 936, 972, 1371
BtgI CCRYGG 3 cut(s) 416, 805, 1286
BtgZI GCGATG 1 cut(s) 35
BtsCI GGATG 3 cut(s) 363, 385, 706
BtsI GCAGTG 1 cut(s) 967
BtsIMutI CAGTG 3 cut(s) 491, 967, 1225
Cac8I GCNNGC 1 cut(s) 331
Cfr13I GGNCC 1 cut(s) 1230
CseI GACGC 1 cut(s) 30
Csp6I GTAC 4 cut(s) 312, 440, 1138, 1458
CviAII CATG 7 cut(s) 318, 417, 798, 806, 1073, 1180, 1287
CviQI GTAC 4 cut(s) 312, 440, 1138, 1458
DdeI CTNAG 5 cut(s) 102, 138, 459, 897, 1395
DpnI GATC 9 cut(s) 62, 210, 257, 345, 570, 666, 816, 1206, 1427
DpnII GATC 9 cut(s) 60, 208, 255, 343, 568, 664, 814, 1204, 1425
EaeI YGGCCR 3 cut(s) 934, 970, 1369
Eam1104I CTCTTC 1 cut(s) 675
EarI CTCTTC 1 cut(s) 675
Eco130I CCWWGG 4 cut(s) 416, 805, 1121, 1286
Eco47I GGWCC 1 cut(s) 1230
Eco57I CTGAAG 3 cut(s) 87, 467, 1438
Eco88I CYCGRG 1 cut(s) 660
EcoRII CCWGG 2 cut(s) 603, 1195
EcoT14I CCWWGG 4 cut(s) 416, 805, 1121, 1286
ErhI CCWWGG 4 cut(s) 416, 805, 1121, 1286
FaeI CATG 7 cut(s) 321, 420, 801, 809, 1076, 1183, 1290
FalI AAGNNNNNCTT 2 cut(s) 1436, 1468
FaqI GGGAC 1 cut(s) 1415
FatI CATG 7 cut(s) 317, 416, 797, 805, 1072, 1179, 1286
FauNDI CATATG 1 cut(s) 183
FbaI TGATCA 1 cut(s) 568
FblI GTMKAC 1 cut(s) 1410
Fnu4HI GCNGC 2 cut(s) 1077, 1465
FokI GGATG 3 cut(s) 370, 392, 713
Fsp4HI GCNGC 2 cut(s) 1077, 1465
FspBI CTAG 6 cut(s) 98, 173, 299, 330, 404, 1241
GluI GCNGC 2 cut(s) 1077, 1465
HaeIII GGCC 4 cut(s) 457, 936, 972, 1371
HapII CCGG 1 cut(s) 933
HgaI GACGC 1 cut(s) 30
Hin1II CATG 7 cut(s) 321, 420, 801, 809, 1076, 1183, 1290
HincII GTYRAC 1 cut(s) 1087
HindII GTYRAC 1 cut(s) 1087
HindIII AAGCTT 1 cut(s) 69
HinfI GANTC 5 cut(s) 386, 432, 463, 639, 645
HpaII CCGG 1 cut(s) 933
HphI GGTGA 2 cut(s) 334, 851
Hpy166II GTNNAC 2 cut(s) 1087, 1411
Hpy188I TCNGA 8 cut(s) 67, 105, 495, 638, 644, 745, 915, 1046
Hpy8I GTNNAC 2 cut(s) 1087, 1411
HpyAV CCTTC 7 cut(s) 388, 611, 659, 915, 1342, 1357, 1496
HpyCH4III ACNGT 3 cut(s) 295, 410, 1220
HpyCH4V TGCA 6 cut(s) 181, 374, 489, 511, 854, 1467
HpyF10VI GCNNNNNNNGC 2 cut(s) 1076, 1278
HpyF3I CTNAG 5 cut(s) 102, 138, 459, 897, 1395
Hsp92II CATG 7 cut(s) 321, 420, 801, 809, 1076, 1183, 1290
KpnI GGTACC 1 cut(s) 1141
Ksp22I TGATCA 1 cut(s) 568
Kzo9I GATC 9 cut(s) 60, 208, 255, 343, 568, 664, 814, 1204, 1425
LmnI GCTCC 3 cut(s) 799, 1269, 1434
Lsp1109I GCAGC 1 cut(s) 1451
LweI GCATC 2 cut(s) 646, 1476
MaeI CTAG 6 cut(s) 98, 173, 299, 330, 404, 1241
MaeIII GTNAC 6 cut(s) 268, 278, 367, 962, 1258, 1304
MalI GATC 9 cut(s) 62, 210, 257, 345, 570, 666, 816, 1206, 1427
MbiI CCGCTC 1 cut(s) 1272
MboI GATC 9 cut(s) 60, 208, 255, 343, 568, 664, 814, 1204, 1425
MboII GAAGA 4 cut(s) 158, 626, 662, 1354
MflI RGATCY 4 cut(s) 60, 255, 343, 664
MhlI GDGCHC 1 cut(s) 1072
MlsI TGGCCA 1 cut(s) 1371
MluCI AATT 6 cut(s) 194, 423, 737, 976, 1053, 1387
MluNI TGGCCA 1 cut(s) 1371
MlyI GAGTC 3 cut(s) 457, 648, 654
MmeI TCCRAC 1 cut(s) 970
Mox20I TGGCCA 1 cut(s) 1371
MroXI GAANNNNTTC 1 cut(s) 1346
MscI TGGCCA 1 cut(s) 1371
MseI TTAA 5 cut(s) 39, 134, 588, 1167, 1296
MslI CAYNNNNRTG 2 cut(s) 590, 1008
Msp20I TGGCCA 1 cut(s) 1371
MspA1I CMGCKG 1 cut(s) 1394
MspI CCGG 1 cut(s) 933
MspR9I CCNGG 3 cut(s) 605, 933, 1197
Mva1269I GAATGC 1 cut(s) 1027
MvaI CCWGG 2 cut(s) 605, 1197
MvnI CGCG 1 cut(s) 1340
MwoI GCNNNNNNNGC 2 cut(s) 1076, 1278
NciI CCSGG 1 cut(s) 933
NcoI CCATGG 3 cut(s) 416, 805, 1286
NdeI CATATG 1 cut(s) 183
NdeII GATC 9 cut(s) 60, 208, 255, 343, 568, 664, 814, 1204, 1425
NheI GCTAGC 1 cut(s) 329
NlaIII CATG 7 cut(s) 321, 420, 801, 809, 1076, 1183, 1290
NlaIV GGNNCC 8 cut(s) 45, 345, 412, 622, 666, 706, 1139, 1330
NmuCI GTSAC 2 cut(s) 962, 1258
PctI GAATGC 1 cut(s) 1027
PdmI GAANNNNTTC 1 cut(s) 1346
PfeI GAWTC 2 cut(s) 386, 432
PflFI GACNNNGTC 1 cut(s) 1406
PflMI CCANNNNNTGG 2 cut(s) 714, 952
PkrI GCNGC 2 cut(s) 1078, 1466
PleI GAGTC 3 cut(s) 457, 647, 653
PpsI GAGTC 3 cut(s) 457, 647, 653
Psp6I CCWGG 2 cut(s) 603, 1195
PspGI CCWGG 2 cut(s) 603, 1195
PspN4I GGNNCC 8 cut(s) 45, 345, 412, 622, 666, 706, 1139, 1330
PspPI GGNCC 1 cut(s) 1230
PsrI GAACNNNNNNTAC 2 cut(s) 1005, 1037
PstI CTGCAG 1 cut(s) 376
PsuI RGATCY 4 cut(s) 60, 255, 343, 664
PsyI GACNNNGTC 1 cut(s) 1406
PvuII CAGCTG 1 cut(s) 1394
RsaI GTAC 4 cut(s) 313, 441, 1139, 1459
RsaNI GTAC 4 cut(s) 312, 440, 1138, 1458
RseI CAYNNNNRTG 2 cut(s) 590, 1008
SaqAI TTAA 5 cut(s) 39, 134, 588, 1167, 1296
SatI GCNGC 2 cut(s) 1077, 1465
Sau3AI GATC 9 cut(s) 60, 208, 255, 343, 568, 664, 814, 1204, 1425
Sau96I GGNCC 1 cut(s) 1230
SchI GAGTC 3 cut(s) 457, 648, 654
ScrFI CCNGG 3 cut(s) 605, 933, 1197
SduI GDGCHC 1 cut(s) 1072
SfaNI GCATC 2 cut(s) 646, 1476
SfcI CTRYAG 3 cut(s) 372, 625, 675
SinI GGWCC 1 cut(s) 1230
SmiMI CAYNNNNRTG 2 cut(s) 590, 1008
SmlI CTYRAG 2 cut(s) 1225, 1354
SmoI CTYRAG 2 cut(s) 1225, 1354
Sse9I AATT 6 cut(s) 194, 423, 737, 976, 1053, 1387
SsiI CCGC 2 cut(s) 1077, 1272
SspI AATATT 1 cut(s) 1174
SspMI CTAG 6 cut(s) 98, 173, 299, 330, 404, 1241
StyD4I CCNGG 3 cut(s) 603, 931, 1195
StyI CCWWGG 4 cut(s) 416, 805, 1121, 1286
TaaI ACNGT 3 cut(s) 295, 410, 1220
TaqI TCGA 2 cut(s) 732, 865
TasI AATT 6 cut(s) 194, 423, 737, 976, 1053, 1387
TatI WGTACW 2 cut(s) 439, 1457
TauI GCSGC 1 cut(s) 1079
TfiI GAWTC 2 cut(s) 386, 432
Tru1I TTAA 5 cut(s) 39, 134, 588, 1167, 1296
Tru9I TTAA 5 cut(s) 39, 134, 588, 1167, 1296
TscAI CASTG 3 cut(s) 491, 967, 1225
TseFI GTSAC 2 cut(s) 962, 1258
TseI GCWGC 1 cut(s) 1464
Tsp45I GTSAC 2 cut(s) 962, 1258
TspDTI ATGAA 7 cut(s) 105, 351, 574, 840, 897, 1026, 1339
TspRI CASTG 3 cut(s) 491, 967, 1225
Tth111I GACNNNGTC 1 cut(s) 1406
Van91I CCANNNNNTGG 2 cut(s) 714, 952
VpaK11BI GGWCC 1 cut(s) 1230
XapI RAATTY 3 cut(s) 976, 1053, 1387
XbaI TCTAGA 1 cut(s) 403
XmiI GTMKAC 1 cut(s) 1410
XmnI GAANNNNTTC 1 cut(s) 1346
XspI CTAG 6 cut(s) 98, 173, 299, 330, 404, 1241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.