Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 971, 1003 |
| AclWI | GGATC | 2 cut(s) | 885, 898 |
| AcsI | RAATTY | 1 cut(s) | 30 |
| AcuI | CTGAAG | 2 cut(s) | 164, 632 |
| AcvI | CACGTG | 1 cut(s) | 878 |
| AfaI | GTAC | 3 cut(s) | 110, 324, 602 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 158 |
| AflIII | ACRYGT | 1 cut(s) | 1006 |
| AgeI | ACCGGT | 1 cut(s) | 742 |
| AgsI | TTSAA | 4 cut(s) | 41, 80, 628, 691 |
| AjnI | CCWGG | 4 cut(s) | 102, 151, 530, 976 |
| AluBI | AGCT | 2 cut(s) | 265, 277 |
| AluI | AGCT | 2 cut(s) | 265, 277 |
| Alw26I | GTCTC | 1 cut(s) | 976 |
| AlwI | GGATC | 2 cut(s) | 885, 898 |
| AoxI | GGCC | 1 cut(s) | 332 |
| ApoI | RAATTY | 1 cut(s) | 30 |
| AsiGI | ACCGGT | 1 cut(s) | 742 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 30 |
| AspS9I | GGNCC | 2 cut(s) | 409, 475 |
| AsuHPI | GGTGA | 2 cut(s) | 332, 860 |
| AvaII | GGWCC | 2 cut(s) | 409, 475 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 832, 865 |
| BamHI | GGATCC | 1 cut(s) | 890 |
| BbrPI | CACGTG | 1 cut(s) | 878 |
| BbsI | GAAGAC | 1 cut(s) | 643 |
| BccI | CCATC | 2 cut(s) | 41, 947 |
| BciT130I | CCWGG | 4 cut(s) | 104, 153, 532, 978 |
| BciVI | GTATCC | 1 cut(s) | 378 |
| BcoDI | GTCTC | 1 cut(s) | 976 |
| BfaI | CTAG | 2 cut(s) | 359, 912 |
| BfmI | CTRYAG | 2 cut(s) | 420, 661 |
| BfuI | GTATCC | 1 cut(s) | 378 |
| Bme1390I | CCNGG | 4 cut(s) | 104, 153, 532, 978 |
| Bme18I | GGWCC | 2 cut(s) | 409, 475 |
| BmgT120I | GGNCC | 2 cut(s) | 409, 475 |
| BmiI | GGNNCC | 2 cut(s) | 477, 892 |
| BmrFI | CCNGG | 4 cut(s) | 104, 153, 532, 978 |
| BmrI | ACTGGG | 1 cut(s) | 209 |
| BmsI | GCATC | 2 cut(s) | 408, 517 |
| BmuI | ACTGGG | 1 cut(s) | 209 |
| BpiI | GAAGAC | 1 cut(s) | 643 |
| BpmI | CTGGAG | 2 cut(s) | 125, 581 |
| BsaAI | YACGTR | 1 cut(s) | 878 |
| BsaBI | GATNNNNATC | 2 cut(s) | 117, 212 |
| BsaJI | CCNNGG | 4 cut(s) | 152, 293, 717, 977 |
| BsaWI | WCCGGW | 2 cut(s) | 742, 794 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 158 |
| Bse118I | RCCGGY | 1 cut(s) | 742 |
| Bse1I | ACTGG | 3 cut(s) | 204, 335, 598 |
| Bse8I | GATNNNNATC | 2 cut(s) | 117, 212 |
| BseBI | CCWGG | 4 cut(s) | 104, 153, 532, 978 |
| BseDI | CCNNGG | 4 cut(s) | 152, 293, 717, 977 |
| BseGI | GGATG | 1 cut(s) | 399 |
| BseJI | GATNNNNATC | 2 cut(s) | 117, 212 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 158 |
| BseMII | CTCAG | 1 cut(s) | 526 |
| BseNI | ACTGG | 3 cut(s) | 204, 335, 598 |
| BseYI | CCCAGC | 1 cut(s) | 157 |
| BshFI | GGCC | 1 cut(s) | 334 |
| BshTI | ACCGGT | 1 cut(s) | 742 |
| BsiSI | CCGG | 2 cut(s) | 743, 795 |
| BslFI | GGGAC | 1 cut(s) | 216 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 158 |
| BsmAI | GTCTC | 1 cut(s) | 976 |
| BsmFI | GGGAC | 1 cut(s) | 216 |
| BsnI | GGCC | 1 cut(s) | 334 |
| Bsp143I | GATC | 2 cut(s) | 207, 890 |
| BspANI | GGCC | 1 cut(s) | 334 |
| BspCNI | CTCAG | 1 cut(s) | 525 |
| BspHI | TCATGA | 1 cut(s) | 504 |
| BspLI | GGNNCC | 2 cut(s) | 477, 892 |
| BspMAI | CTGCAG | 1 cut(s) | 665 |
| BspPI | GGATC | 2 cut(s) | 885, 898 |
| BsrFI | RCCGGY | 1 cut(s) | 742 |
| BsrI | ACTGG | 3 cut(s) | 204, 335, 598 |
| BssAI | RCCGGY | 1 cut(s) | 742 |
| BssECI | CCNNGG | 4 cut(s) | 152, 293, 717, 977 |
| BssMI | GATC | 2 cut(s) | 207, 890 |
| BssT1I | CCWWGG | 2 cut(s) | 293, 717 |
| Bst2UI | CCWGG | 4 cut(s) | 104, 153, 532, 978 |
| Bst4CI | ACNGT | 6 cut(s) | 70, 86, 250, 322, 923, 945 |
| BstBAI | YACGTR | 1 cut(s) | 878 |
| BstC8I | GCNNGC | 2 cut(s) | 267, 661 |
| BstDEI | CTNAG | 2 cut(s) | 512, 641 |
| BstF5I | GGATG | 1 cut(s) | 399 |
| BstKTI | GATC | 2 cut(s) | 210, 893 |
| BstMAI | GTCTC | 1 cut(s) | 976 |
| BstMBI | GATC | 2 cut(s) | 207, 890 |
| BstNI | CCWGG | 4 cut(s) | 104, 153, 532, 978 |
| BstNSI | RCATGY | 1 cut(s) | 1010 |
| BstSCI | CCNGG | 4 cut(s) | 102, 151, 530, 976 |
| BstSFI | CTRYAG | 2 cut(s) | 420, 661 |
| BstV2I | GAAGAC | 1 cut(s) | 643 |
| BstX2I | RGATCY | 1 cut(s) | 890 |
| BstYI | RGATCY | 1 cut(s) | 890 |
| BsuI | GTATCC | 1 cut(s) | 378 |
| BsuRI | GGCC | 1 cut(s) | 334 |
| BtgZI | GCGATG | 1 cut(s) | 77 |
| BtsCI | GGATG | 1 cut(s) | 399 |
| BtsIMutI | CAGTG | 4 cut(s) | 91, 197, 328, 928 |
| Cac8I | GCNNGC | 2 cut(s) | 267, 661 |
| CciI | TCATGA | 1 cut(s) | 504 |
| Cfr10I | RCCGGY | 1 cut(s) | 742 |
| Cfr13I | GGNCC | 2 cut(s) | 409, 475 |
| Csp6I | GTAC | 3 cut(s) | 109, 323, 601 |
| CspAI | ACCGGT | 1 cut(s) | 742 |
| CviAII | CATG | 4 cut(s) | 395, 505, 844, 1007 |
| CviQI | GTAC | 3 cut(s) | 109, 323, 601 |
| DdeI | CTNAG | 2 cut(s) | 512, 641 |
| DpnI | GATC | 2 cut(s) | 209, 892 |
| DpnII | GATC | 2 cut(s) | 207, 890 |
| Eco130I | CCWWGG | 2 cut(s) | 293, 717 |
| Eco32I | GATATC | 2 cut(s) | 115, 668 |
| Eco47I | GGWCC | 2 cut(s) | 409, 475 |
| Eco57I | CTGAAG | 2 cut(s) | 164, 632 |
| Eco72I | CACGTG | 1 cut(s) | 878 |
| EcoO109I | RGGNCCY | 1 cut(s) | 475 |
| EcoRII | CCWGG | 4 cut(s) | 102, 151, 530, 976 |
| EcoRV | GATATC | 2 cut(s) | 115, 668 |
| EcoT14I | CCWWGG | 2 cut(s) | 293, 717 |
| ErhI | CCWWGG | 2 cut(s) | 293, 717 |
| FaeI | CATG | 4 cut(s) | 398, 508, 847, 1010 |
| FaqI | GGGAC | 1 cut(s) | 216 |
| FatI | CATG | 4 cut(s) | 394, 504, 843, 1006 |
| FauNDI | CATATG | 1 cut(s) | 648 |
| FblI | GTMKAC | 2 cut(s) | 971, 1003 |
| FokI | GGATG | 1 cut(s) | 386 |
| FspBI | CTAG | 2 cut(s) | 359, 912 |
| GsaI | CCCAGC | 1 cut(s) | 161 |
| GsuI | CTGGAG | 2 cut(s) | 125, 581 |
| HaeIII | GGCC | 1 cut(s) | 334 |
| HapII | CCGG | 2 cut(s) | 743, 795 |
| Hin1II | CATG | 4 cut(s) | 398, 508, 847, 1010 |
| HincII | GTYRAC | 2 cut(s) | 73, 100 |
| HindII | GTYRAC | 2 cut(s) | 73, 100 |
| HindIII | AAGCTT | 1 cut(s) | 263 |
| HinfI | GANTC | 5 cut(s) | 165, 213, 594, 823, 1013 |
| HpaII | CCGG | 2 cut(s) | 743, 795 |
| HphI | GGTGA | 2 cut(s) | 332, 860 |
| Hpy166II | GTNNAC | 5 cut(s) | 73, 100, 750, 972, 1004 |
| Hpy188I | TCNGA | 9 cut(s) | 183, 212, 221, 259, 515, 772, 789, 810, 839 |
| Hpy188III | TCNNGA | 2 cut(s) | 505, 1017 |
| Hpy8I | GTNNAC | 5 cut(s) | 73, 100, 750, 972, 1004 |
| Hpy99I | CGWCG | 1 cut(s) | 810 |
| HpyAV | CCTTC | 3 cut(s) | 188, 777, 881 |
| HpyCH4III | ACNGT | 6 cut(s) | 70, 86, 250, 322, 923, 945 |
| HpyCH4IV | ACGT | 2 cut(s) | 325, 877 |
| HpyCH4V | TGCA | 2 cut(s) | 578, 663 |
| HpyF3I | CTNAG | 2 cut(s) | 512, 641 |
| HpySE526I | ACGT | 2 cut(s) | 325, 877 |
| Hsp92II | CATG | 4 cut(s) | 398, 508, 847, 1010 |
| Kzo9I | GATC | 2 cut(s) | 207, 890 |
| LweI | GCATC | 2 cut(s) | 408, 517 |
| MaeI | CTAG | 2 cut(s) | 359, 912 |
| MaeII | ACGT | 2 cut(s) | 325, 877 |
| MaeIII | GTNAC | 7 cut(s) | 326, 491, 652, 848, 862, 923, 945 |
| MalI | GATC | 2 cut(s) | 209, 892 |
| MboI | GATC | 2 cut(s) | 207, 890 |
| MboII | GAAGA | 6 cut(s) | 38, 53, 113, 158, 444, 648 |
| MflI | RGATCY | 1 cut(s) | 890 |
| MluCI | AATT | 7 cut(s) | 30, 51, 437, 516, 571, 712, 959 |
| MlyI | GAGTC | 1 cut(s) | 588 |
| MmeI | TCCRAC | 2 cut(s) | 580, 788 |
| MnlI | CCTC | 7 cut(s) | 22, 52, 345, 466, 501, 874, 943 |
| MroXI | GAANNNNTTC | 1 cut(s) | 30 |
| MseI | TTAA | 1 cut(s) | 225 |
| MslI | CAYNNNNRTG | 1 cut(s) | 404 |
| MspI | CCGG | 2 cut(s) | 743, 795 |
| MspR9I | CCNGG | 4 cut(s) | 104, 153, 532, 978 |
| MvaI | CCWGG | 4 cut(s) | 104, 153, 532, 978 |
| NdeI | CATATG | 1 cut(s) | 648 |
| NdeII | GATC | 2 cut(s) | 207, 890 |
| NlaIII | CATG | 4 cut(s) | 398, 508, 847, 1010 |
| NlaIV | GGNNCC | 2 cut(s) | 477, 892 |
| NmuCI | GTSAC | 4 cut(s) | 326, 848, 862, 923 |
| NspI | RCATGY | 1 cut(s) | 1010 |
| PagI | TCATGA | 1 cut(s) | 504 |
| PciI | ACATGT | 1 cut(s) | 1006 |
| PdmI | GAANNNNTTC | 1 cut(s) | 30 |
| PfeI | GAWTC | 4 cut(s) | 165, 213, 823, 1013 |
| PflFI | GACNNNGTC | 1 cut(s) | 642 |
| PinAI | ACCGGT | 1 cut(s) | 742 |
| PleI | GAGTC | 1 cut(s) | 588 |
| PmaCI | CACGTG | 1 cut(s) | 878 |
| PmlI | CACGTG | 1 cut(s) | 878 |
| PpsI | GAGTC | 1 cut(s) | 588 |
| Ppu21I | YACGTR | 1 cut(s) | 878 |
| PpuMI | RGGWCCY | 1 cut(s) | 475 |
| PscI | ACATGT | 1 cut(s) | 1006 |
| Psp5II | RGGWCCY | 1 cut(s) | 475 |
| Psp6I | CCWGG | 4 cut(s) | 102, 151, 530, 976 |
| PspCI | CACGTG | 1 cut(s) | 878 |
| PspFI | CCCAGC | 1 cut(s) | 157 |
| PspGI | CCWGG | 4 cut(s) | 102, 151, 530, 976 |
| PspN4I | GGNNCC | 2 cut(s) | 477, 892 |
| PspPI | GGNCC | 2 cut(s) | 409, 475 |
| PspPPI | RGGWCCY | 1 cut(s) | 475 |
| PstI | CTGCAG | 1 cut(s) | 665 |
| PsuI | RGATCY | 1 cut(s) | 890 |
| PsyI | GACNNNGTC | 1 cut(s) | 642 |
| RsaI | GTAC | 3 cut(s) | 110, 324, 602 |
| RsaNI | GTAC | 3 cut(s) | 109, 323, 601 |
| RseI | CAYNNNNRTG | 1 cut(s) | 404 |
| SaqAI | TTAA | 1 cut(s) | 225 |
| Sau3AI | GATC | 2 cut(s) | 207, 890 |
| Sau96I | GGNCC | 2 cut(s) | 409, 475 |
| SchI | GAGTC | 1 cut(s) | 588 |
| ScrFI | CCNGG | 4 cut(s) | 104, 153, 532, 978 |
| SfaNI | GCATC | 2 cut(s) | 408, 517 |
| SfcI | CTRYAG | 2 cut(s) | 420, 661 |
| SinI | GGWCC | 2 cut(s) | 409, 475 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 404 |
| Sse9I | AATT | 7 cut(s) | 30, 51, 437, 516, 571, 712, 959 |
| SspI | AATATT | 1 cut(s) | 801 |
| SspMI | CTAG | 2 cut(s) | 359, 912 |
| StyD4I | CCNGG | 4 cut(s) | 102, 151, 530, 976 |
| StyI | CCWWGG | 2 cut(s) | 293, 717 |
| TaaI | ACNGT | 6 cut(s) | 70, 86, 250, 322, 923, 945 |
| TaiI | ACGT | 2 cut(s) | 328, 880 |
| TasI | AATT | 7 cut(s) | 30, 51, 437, 516, 571, 712, 959 |
| TfiI | GAWTC | 4 cut(s) | 165, 213, 823, 1013 |
| Tru1I | TTAA | 1 cut(s) | 225 |
| Tru9I | TTAA | 1 cut(s) | 225 |
| TscAI | CASTG | 4 cut(s) | 91, 204, 335, 928 |
| TseFI | GTSAC | 4 cut(s) | 326, 848, 862, 923 |
| Tsp45I | GTSAC | 4 cut(s) | 326, 848, 862, 923 |
| TspDTI | ATGAA | 4 cut(s) | 159, 300, 369, 493 |
| TspGWI | ACGGA | 1 cut(s) | 794 |
| TspRI | CASTG | 4 cut(s) | 91, 204, 335, 928 |
| Tth111I | GACNNNGTC | 1 cut(s) | 642 |
| VpaK11BI | GGWCC | 2 cut(s) | 409, 475 |
| XapI | RAATTY | 1 cut(s) | 30 |
| XceI | RCATGY | 1 cut(s) | 1010 |
| XmiI | GTMKAC | 2 cut(s) | 971, 1003 |
| XmnI | GAANNNNTTC | 1 cut(s) | 30 |
| XspI | CTAG | 2 cut(s) | 359, 912 |