Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfaI | GTAC | 1 cut(s) | 339 |
| AgsI | TTSAA | 2 cut(s) | 18, 109 |
| AjnI | CCWGG | 1 cut(s) | 259 |
| AluBI | AGCT | 2 cut(s) | 200, 369 |
| AluI | AGCT | 2 cut(s) | 200, 369 |
| Ama87I | CYCGRG | 1 cut(s) | 155 |
| AoxI | GGCC | 2 cut(s) | 205, 298 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 33 |
| AspLEI | GCGC | 1 cut(s) | 293 |
| AspS9I | GGNCC | 1 cut(s) | 299 |
| AsuC2I | CCSGG | 2 cut(s) | 156, 157 |
| AsuHPI | GGTGA | 1 cut(s) | 38 |
| AvaI | CYCGRG | 1 cut(s) | 155 |
| BanII | GRGCYC | 1 cut(s) | 156 |
| BciT130I | CCWGG | 1 cut(s) | 261 |
| BciVI | GTATCC | 2 cut(s) | 268, 348 |
| BcnI | CCSGG | 2 cut(s) | 156, 157 |
| BfaI | CTAG | 2 cut(s) | 203, 370 |
| BfuI | GTATCC | 2 cut(s) | 268, 348 |
| Bme1390I | CCNGG | 3 cut(s) | 156, 157, 261 |
| BmeT110I | CYCGRG | 1 cut(s) | 155 |
| BmgT120I | GGNCC | 1 cut(s) | 299 |
| BmrFI | CCNGG | 3 cut(s) | 156, 157, 261 |
| BpuMI | CCSGG | 2 cut(s) | 156, 157 |
| BsaAI | YACGTR | 1 cut(s) | 341 |
| BsaJI | CCNNGG | 2 cut(s) | 155, 259 |
| BseBI | CCWGG | 1 cut(s) | 261 |
| BseDI | CCNNGG | 2 cut(s) | 155, 259 |
| BseMII | CTCAG | 1 cut(s) | 152 |
| BseRI | GAGGAG | 1 cut(s) | 180 |
| BshFI | GGCC | 2 cut(s) | 207, 300 |
| BsiHKCI | CYCGRG | 1 cut(s) | 155 |
| BsiSI | CCGG | 1 cut(s) | 156 |
| BsiWI | CGTACG | 1 cut(s) | 337 |
| BsnI | GGCC | 2 cut(s) | 207, 300 |
| BsoBI | CYCGRG | 1 cut(s) | 155 |
| Bsp1286I | GDGCHC | 1 cut(s) | 156 |
| BspANI | GGCC | 2 cut(s) | 207, 300 |
| BspCNI | CTCAG | 1 cut(s) | 153 |
| BspQI | GCTCTTC | 1 cut(s) | 144 |
| BssECI | CCNNGG | 2 cut(s) | 155, 259 |
| Bst2UI | CCWGG | 1 cut(s) | 261 |
| Bst4CI | ACNGT | 2 cut(s) | 253, 288 |
| Bst6I | CTCTTC | 3 cut(s) | 16, 24, 144 |
| BstBAI | YACGTR | 1 cut(s) | 341 |
| BstDEI | CTNAG | 1 cut(s) | 161 |
| BstHHI | GCGC | 1 cut(s) | 293 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 297 |
| BstNI | CCWGG | 1 cut(s) | 261 |
| BstSCI | CCNGG | 3 cut(s) | 154, 155, 259 |
| BsuI | GTATCC | 2 cut(s) | 268, 348 |
| BsuRI | GGCC | 2 cut(s) | 207, 300 |
| CfoI | GCGC | 1 cut(s) | 293 |
| Cfr13I | GGNCC | 1 cut(s) | 299 |
| Cfr9I | CCCGGG | 1 cut(s) | 155 |
| Csp6I | GTAC | 1 cut(s) | 338 |
| CviJI | RGCY | 8 cut(s) | 5, 65, 154, 160, 200, 207, 300, 369 |
| CviKI_1 | RGCY | 8 cut(s) | 5, 65, 154, 160, 200, 207, 300, 369 |
| CviQI | GTAC | 1 cut(s) | 338 |
| DdeI | CTNAG | 1 cut(s) | 161 |
| Eam1104I | CTCTTC | 3 cut(s) | 16, 24, 144 |
| EarI | CTCTTC | 3 cut(s) | 16, 24, 144 |
| Eco24I | GRGCYC | 1 cut(s) | 156 |
| Eco88I | CYCGRG | 1 cut(s) | 155 |
| EcoRII | CCWGG | 1 cut(s) | 259 |
| EcoT38I | GRGCYC | 1 cut(s) | 156 |
| FaiI | YATR | 5 cut(s) | 101, 114, 128, 134, 366 |
| FriOI | GRGCYC | 1 cut(s) | 156 |
| FspBI | CTAG | 2 cut(s) | 203, 370 |
| GlaI | GCGC | 1 cut(s) | 292 |
| HaeIII | GGCC | 2 cut(s) | 207, 300 |
| HapII | CCGG | 1 cut(s) | 156 |
| HhaI | GCGC | 1 cut(s) | 293 |
| Hin6I | GCGC | 1 cut(s) | 291 |
| HinP1I | GCGC | 1 cut(s) | 291 |
| HinfI | GANTC | 3 cut(s) | 34, 168, 216 |
| HpaII | CCGG | 1 cut(s) | 156 |
| HphI | GGTGA | 1 cut(s) | 38 |
| Hpy166II | GTNNAC | 1 cut(s) | 241 |
| Hpy188I | TCNGA | 3 cut(s) | 215, 224, 231 |
| Hpy188III | TCNNGA | 2 cut(s) | 82, 181 |
| Hpy8I | GTNNAC | 1 cut(s) | 241 |
| HpyCH4III | ACNGT | 2 cut(s) | 253, 288 |
| HpyCH4IV | ACGT | 1 cut(s) | 340 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 297 |
| HpyF3I | CTNAG | 1 cut(s) | 161 |
| HpySE526I | ACGT | 1 cut(s) | 340 |
| HspAI | GCGC | 1 cut(s) | 291 |
| LguI | GCTCTTC | 1 cut(s) | 144 |
| LpnPI | CCDG | 4 cut(s) | 169, 194, 246, 273 |
| MaeI | CTAG | 2 cut(s) | 203, 370 |
| MaeII | ACGT | 1 cut(s) | 340 |
| MboII | GAAGA | 5 cut(s) | 3, 6, 41, 161, 244 |
| MhlI | GDGCHC | 1 cut(s) | 156 |
| MlyI | GAGTC | 1 cut(s) | 177 |
| MnlI | CCTC | 4 cut(s) | 19, 43, 158, 312 |
| MroXI | GAANNNNTTC | 1 cut(s) | 33 |
| MseI | TTAA | 2 cut(s) | 60, 75 |
| MspI | CCGG | 1 cut(s) | 156 |
| MspR9I | CCNGG | 3 cut(s) | 156, 157, 261 |
| MvaI | CCWGG | 1 cut(s) | 261 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 297 |
| NciI | CCSGG | 2 cut(s) | 156, 157 |
| PciSI | GCTCTTC | 1 cut(s) | 144 |
| PdmI | GAANNNNTTC | 1 cut(s) | 33 |
| PfeI | GAWTC | 2 cut(s) | 34, 216 |
| Pfl23II | CGTACG | 1 cut(s) | 337 |
| PleI | GAGTC | 1 cut(s) | 176 |
| PpsI | GAGTC | 1 cut(s) | 176 |
| Ppu21I | YACGTR | 1 cut(s) | 341 |
| Psp6I | CCWGG | 1 cut(s) | 259 |
| PspGI | CCWGG | 1 cut(s) | 259 |
| PspLI | CGTACG | 1 cut(s) | 337 |
| PspPI | GGNCC | 1 cut(s) | 299 |
| RsaI | GTAC | 1 cut(s) | 339 |
| RsaNI | GTAC | 1 cut(s) | 338 |
| SapI | GCTCTTC | 1 cut(s) | 144 |
| SaqAI | TTAA | 2 cut(s) | 60, 75 |
| Sau96I | GGNCC | 1 cut(s) | 299 |
| SchI | GAGTC | 1 cut(s) | 177 |
| ScrFI | CCNGG | 3 cut(s) | 156, 157, 261 |
| SduI | GDGCHC | 1 cut(s) | 156 |
| SetI | ASST | 4 cut(s) | 202, 343, 350, 371 |
| SmaI | CCCGGG | 1 cut(s) | 157 |
| SrfI | GCCCGGGC | 1 cut(s) | 157 |
| SspMI | CTAG | 2 cut(s) | 203, 370 |
| StyD4I | CCNGG | 3 cut(s) | 154, 155, 259 |
| TaaI | ACNGT | 2 cut(s) | 253, 288 |
| TaiI | ACGT | 1 cut(s) | 343 |
| TaqI | TCGA | 1 cut(s) | 81 |
| TfiI | GAWTC | 2 cut(s) | 34, 216 |
| Tru1I | TTAA | 2 cut(s) | 60, 75 |
| Tru9I | TTAA | 2 cut(s) | 60, 75 |
| TspDTI | ATGAA | 2 cut(s) | 88, 162 |
| TspMI | CCCGGG | 1 cut(s) | 155 |
| XmaI | CCCGGG | 1 cut(s) | 155 |
| XmnI | GAANNNNTTC | 1 cut(s) | 33 |
| XspI | CTAG | 2 cut(s) | 203, 370 |