FvH4_7g05661

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000073
Physical Location & Seq
Forward (+)
5937834 .. 5941334
3501 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g05661.t1

Sequence Viewer

Length: 1575 bp
ATGGCAATTGAGGAAGTCAATAAAACACATCTGCCTCTATGGGTACAAGCAAAGGGTATTACTTTAGAGGAACTCACCCCAGAAAGTGCTGAGCTCATTGGAAATGAAGTGGGGAAAATTCTGGAAGCTGAAAACCCACTTACACATGAGTGTTTCAGGGGATTTCTTAGAGTAAAGGTGGAAATCGAGGCAAGTATGCCATTGAAGGATGGATTCTGGATGCCGCGAGAGGATGGAGACCAATCATGGGTGGAATTGAAATACGAGAGGTTGTCTGATTTTTGTTTTGGATGTGCAAGGCTCGGCCATACCGTGAATGCATGCATGTTCGGGGAAAGGGATGAATTTGGCACCATAATCAGGAAATTTGATTCAAGATTGAGAGCAAGGATCATTAGACCGGAGCCATTACCAGCCATGGAGATTGATGGGCTAACTCCGACTCGGAGAACAGCCACGATGCGGCGGAGTCAGTTTGCCCGGAACGGGGCACGTAGTGCCACAACAATGGTCCATGCTAATTTGGGTCCAGCAATTCACAGTGTCCAGAGGGATCAGACTGGACACCTTGCACCCCAACAGCCAAGTGTCCAGAGGGATCAGACTGGGCACCTTACACCCCAACAGCCAAGCATGGGATCACGCCAGACCAACTCCGAAACACATCAGACTGTAAACTGTGCCCAAGACAAACTTGTGTCAGTGGAATCAGCCCAACGGCTACTAAGAGGTAAAGACCATATCTCCACTAGTGATATTCCCTCTAGAACCCCAAACAGGCCCACTGTCTCTACCCTCTCAGTCATTAAGGATTGGCTAACCACTAGCCCAAGTAGCCCAAACCAAAATTCACAAGTTTTTAACGGCCCAAGTAGTTGGCAACTACATCAAGACCCAAGCAACCCAATTCTACCAAGGGCGGTAGGCCCAAATCCCCATGAGCCATGCCTAGACCCACAACTCAATGATACCCCGATCGGTAGCCCAACCTCTCAAACCCACCATAATGTCATTGGTGAGAGAGACATGCCACAACATGAACTTTGTTTAAGTATCTGCTGTTTGGGAAAACGACCACTCACCTGTCATGAGAAAGCCCGTCTATGTGGGGAGCTAGATCACTCTTTAGCCATTCCAATGGTCAATACTCTCCCACCATCAACCAGCTACCCTCAACCAATGACTACTTCACAAATTACCAAACCTCTCACCTCACCTCATACCTCTCTGAAGAGAAACCTAACGTCAGAAACCTCACAAGCCAACCTCAAATCTAAGCTCCGAAAAGTCTCTTTACCTTCCAACTTTGGAGGTGTCGTTATTAGGGGTGCTCCCTCGCGTTCTAGAGGGGGAAGGGGCAAGGGAAGAAGAGGTCCCAACATGGGTGGTGTTTGCACTCTAGATGGGAGAAGGAACCTTAGGAGTAGTGTTGAAAGGGAGGTCTACAGCGAGATAGTAACAGTTAATGGAGGATCACAAGATATTTCAGCCTCAAGTAGTGGGGATGTTCAGATGGGGGATGTTATGTCTCCGGGCGGTGGCGGCTGGCCTACAACAGCCGCAAGGTCCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 Exo_endo_phos_2 RNase_H RVT_1 zf-CCHC_4

Protein Analysis

525

Amino Acids

57.41

Weight (kDa)

8.81

Isoelectric Point (pI)

58.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 77 - 109 1.5e-09 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 350, 609
AccI GTMKAC 1 cut(s) 1443
AccII CGCG 2 cut(s) 226, 1339
AciI CCGC 7 cut(s) 224, 463, 466, 920, 1536, 1542, 1560
AclWI GGATC 5 cut(s) 398, 561, 606, 646, 1480
AcoI YGGCCR 1 cut(s) 304
AcsI RAATTY 4 cut(s) 117, 344, 365, 847
AcuI CTGAAG 1 cut(s) 1250
AdeI CACNNNGTG 1 cut(s) 497
AfaI GTAC 1 cut(s) 45
AfiI CCNNNNNNNGG 9 cut(s) 247, 360, 462, 486, 487, 635, 777, 1382, 1538
AgsI TTSAA 4 cut(s) 205, 259, 375, 1433
AhlI ACTAGT 1 cut(s) 749
AjuI GAANNNNNNNTTGG 4 cut(s) 832, 864, 1171, 1203
AleI CACNNNNGTG 1 cut(s) 148
AluBI AGCT 5 cut(s) 94, 128, 1114, 1167, 1279
AluI AGCT 5 cut(s) 94, 128, 1114, 1167, 1279
Alw21I GWGCWC 2 cut(s) 96, 1333
Alw26I GTCTC 5 cut(s) 231, 793, 1017, 1294, 1533
AlwI GGATC 5 cut(s) 398, 561, 606, 646, 1480
AoxI GGCC 5 cut(s) 304, 779, 865, 925, 1547
ApoI RAATTY 4 cut(s) 117, 344, 365, 847
AspS9I GGNCC 7 cut(s) 511, 527, 780, 866, 926, 1373, 1566
AsuC2I CCSGG 2 cut(s) 481, 1533
AsuHPI GGTGA 5 cut(s) 67, 1028, 1072, 1201, 1206
AvaII GGWCC 4 cut(s) 511, 527, 1373, 1566
AxyI CCTNAGG 1 cut(s) 1418
BaeGI GKGCMC 3 cut(s) 493, 612, 685
BanI GGYRCC 2 cut(s) 350, 609
BanII GRGCYC 1 cut(s) 96
Bbv12I GWGCWC 2 cut(s) 96, 1333
BccI CCATC 6 cut(s) 203, 227, 422, 1165, 1397, 1507
BceAI ACGGC 2 cut(s) 734, 880
BcnI CCSGG 2 cut(s) 481, 1533
BcoDI GTCTC 5 cut(s) 231, 793, 1017, 1294, 1533
BcuI ACTAGT 1 cut(s) 749
BfaI CTAG 7 cut(s) 750, 765, 825, 950, 1115, 1344, 1400
BfmI CTRYAG 1 cut(s) 1444
BisI GCNGC 4 cut(s) 224, 464, 1543, 1560
BlpI GCTNAGC 1 cut(s) 90
BlsI GCNGC 4 cut(s) 225, 465, 1544, 1561
Bme1390I CCNGG 2 cut(s) 481, 1533
Bme18I GGWCC 4 cut(s) 511, 527, 1373, 1566
BmgT120I GGNCC 7 cut(s) 511, 527, 780, 866, 926, 1373, 1566
BmiI GGNNCC 7 cut(s) 352, 405, 528, 611, 1375, 1415, 1568
BmrFI CCNGG 2 cut(s) 481, 1533
BmrI ACTGGG 1 cut(s) 615
BmsI GCATC 2 cut(s) 210, 450
BmuI ACTGGG 1 cut(s) 615
Bpu1102I GCTNAGC 1 cut(s) 90
BpuEI CTTGAG 1 cut(s) 1477
BpuMI CCSGG 2 cut(s) 481, 1533
BsaAI YACGTR 1 cut(s) 494
BsaI GGTCTC 1 cut(s) 231
BsaJI CCNNGG 2 cut(s) 417, 914
BsaWI WCCGGW 1 cut(s) 400
BsaXI ACNNNNNCTCC 4 cut(s) 728, 758, 1302, 1332
Bsc4I CCNNNNNNNGG 9 cut(s) 247, 360, 462, 486, 487, 635, 777, 1382, 1538
Bse1I ACTGG 2 cut(s) 565, 610
Bse21I CCTNAGG 1 cut(s) 1418
BseDI CCNNGG 2 cut(s) 417, 914
BseGI GGATG 7 cut(s) 214, 225, 238, 296, 346, 1510, 1525
BseLI CCNNNNNNNGG 9 cut(s) 247, 360, 462, 486, 487, 635, 777, 1382, 1538
BseMII CTCAG 2 cut(s) 81, 813
BseNI ACTGG 2 cut(s) 565, 610
BseSI GKGCMC 3 cut(s) 493, 612, 685
Bsh1236I CGCG 2 cut(s) 226, 1339
Bsh1285I CGRYCG 1 cut(s) 978
BshFI GGCC 5 cut(s) 306, 781, 867, 927, 1549
BshNI GGYRCC 2 cut(s) 350, 609
BsiEI CGRYCG 1 cut(s) 978
BsiHKAI GWGCWC 2 cut(s) 96, 1333
BsiSI CCGG 3 cut(s) 401, 481, 1532
BslFI GGGAC 2 cut(s) 1359, 1552
BslI CCNNNNNNNGG 9 cut(s) 247, 360, 462, 486, 487, 635, 777, 1382, 1538
BsmAI GTCTC 5 cut(s) 231, 793, 1017, 1294, 1533
BsmFI GGGAC 2 cut(s) 1359, 1552
BsmI GAATGC 1 cut(s) 322
BsnI GGCC 5 cut(s) 306, 781, 867, 927, 1549
Bso31I GGTCTC 1 cut(s) 231
Bsp1286I GDGCHC 5 cut(s) 96, 493, 612, 685, 1333
Bsp143I GATC 7 cut(s) 390, 553, 598, 638, 975, 1117, 1472
Bsp1720I GCTNAGC 1 cut(s) 90
Bsp19I CCATGG 1 cut(s) 417
BspACI CCGC 7 cut(s) 224, 463, 466, 920, 1536, 1542, 1560
BspANI GGCC 5 cut(s) 306, 781, 867, 927, 1549
BspCNI CTCAG 2 cut(s) 82, 812
BspFNI CGCG 2 cut(s) 226, 1339
BspHI TCATGA 1 cut(s) 1087
BspLI GGNNCC 7 cut(s) 352, 405, 528, 611, 1375, 1415, 1568
BspPI GGATC 5 cut(s) 398, 561, 606, 646, 1480
BspT107I GGYRCC 2 cut(s) 350, 609
BspTNI GGTCTC 1 cut(s) 231
BsrI ACTGG 2 cut(s) 565, 610
BssECI CCNNGG 2 cut(s) 417, 914
BssMI GATC 7 cut(s) 390, 553, 598, 638, 975, 1117, 1472
BssT1I CCWWGG 2 cut(s) 417, 914
Bst4CI ACNGT 6 cut(s) 313, 542, 673, 680, 787, 1462
Bst6I CTCTTC 2 cut(s) 1226, 1363
BstAPI GCANNNNNTGC 1 cut(s) 497
BstBAI YACGTR 1 cut(s) 494
BstC8I GCNNGC 2 cut(s) 322, 1547
BstDEI CTNAG 6 cut(s) 90, 167, 725, 799, 1275, 1418
BstDSI CCRYGG 1 cut(s) 417
BstF5I GGATG 7 cut(s) 214, 225, 238, 296, 346, 1510, 1525
BstFNI CGCG 2 cut(s) 226, 1339
BstKTI GATC 7 cut(s) 393, 556, 601, 641, 978, 1120, 1475
BstMAI GTCTC 5 cut(s) 231, 793, 1017, 1294, 1533
BstMBI GATC 7 cut(s) 390, 553, 598, 638, 975, 1117, 1472
BstMCI CGRYCG 1 cut(s) 978
BstMWI GCNNNNNNNGC 3 cut(s) 497, 834, 1542
BstNSI RCATGY 3 cut(s) 324, 328, 1030
BstSCI CCNGG 2 cut(s) 479, 1531
BstSFI CTRYAG 1 cut(s) 1444
BstSLI GKGCMC 3 cut(s) 493, 612, 685
BstUI CGCG 2 cut(s) 226, 1339
BstXI CCANNNNNNTGG 3 cut(s) 508, 876, 1138
Bsu36I CCTNAGG 1 cut(s) 1418
BsuRI GGCC 5 cut(s) 306, 781, 867, 927, 1549
BtgI CCRYGG 1 cut(s) 417
BtsCI GGATG 7 cut(s) 214, 225, 238, 296, 346, 1510, 1525
BtsIMutI CAGTG 3 cut(s) 547, 708, 783
Cac8I GCNNGC 2 cut(s) 322, 1547
CciI TCATGA 1 cut(s) 1087
Cfr13I GGNCC 7 cut(s) 511, 527, 780, 866, 926, 1373, 1566
Csp6I GTAC 1 cut(s) 44
CspCI CAANNNNNGTGG 2 cut(s) 1366, 1401
CviQI GTAC 1 cut(s) 44
DdeI CTNAG 6 cut(s) 90, 167, 725, 799, 1275, 1418
DpnI GATC 7 cut(s) 392, 555, 600, 640, 977, 1119, 1474
DpnII GATC 7 cut(s) 390, 553, 598, 638, 975, 1117, 1472
DraIII CACNNNGTG 1 cut(s) 497
EaeI YGGCCR 1 cut(s) 304
Eam1104I CTCTTC 2 cut(s) 1226, 1363
EarI CTCTTC 2 cut(s) 1226, 1363
EciI GGCGGA 1 cut(s) 481
Ecl136II GAGCTC 1 cut(s) 94
Eco130I CCWWGG 2 cut(s) 417, 914
Eco24I GRGCYC 1 cut(s) 96
Eco31I GGTCTC 1 cut(s) 231
Eco47I GGWCC 4 cut(s) 511, 527, 1373, 1566
Eco53kI GAGCTC 1 cut(s) 94
Eco57I CTGAAG 1 cut(s) 1250
Eco81I CCTNAGG 1 cut(s) 1418
EcoICRI GAGCTC 1 cut(s) 94
EcoO109I RGGNCCY 2 cut(s) 1373, 1566
EcoT14I CCWWGG 2 cut(s) 417, 914
EcoT22I ATGCAT 2 cut(s) 322, 326
EcoT38I GRGCYC 1 cut(s) 96
ErhI CCWWGG 2 cut(s) 417, 914
FalI AAGNNNNNCTT 2 cut(s) 678, 710
FaqI GGGAC 2 cut(s) 1359, 1552
FblI GTMKAC 1 cut(s) 1443
Fnu4HI GCNGC 4 cut(s) 224, 464, 1543, 1560
FokI GGATG 7 cut(s) 221, 232, 245, 303, 353, 1517, 1532
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 4 cut(s) 224, 464, 1543, 1560
FspBI CTAG 7 cut(s) 750, 765, 825, 950, 1115, 1344, 1400
GluI GCNGC 4 cut(s) 224, 464, 1543, 1560
HaeIII GGCC 5 cut(s) 306, 781, 867, 927, 1549
HapII CCGG 3 cut(s) 401, 481, 1532
HinfI GANTC 5 cut(s) 213, 371, 442, 469, 707
HpaII CCGG 3 cut(s) 401, 481, 1532
HphI GGTGA 5 cut(s) 67, 1028, 1072, 1201, 1206
Hpy166II GTNNAC 2 cut(s) 676, 1444
Hpy8I GTNNAC 2 cut(s) 676, 1444
HpyAV CCTTC 4 cut(s) 199, 1308, 1347, 1404
HpyCH4III ACNGT 6 cut(s) 313, 542, 673, 680, 787, 1462
HpyCH4IV ACGT 2 cut(s) 493, 1244
HpyCH4V TGCA 5 cut(s) 296, 320, 324, 572, 1395
HpyF10VI GCNNNNNNNGC 3 cut(s) 497, 834, 1542
HpyF3I CTNAG 6 cut(s) 90, 167, 725, 799, 1275, 1418
HpySE526I ACGT 2 cut(s) 493, 1244
Kzo9I GATC 7 cut(s) 390, 553, 598, 638, 975, 1117, 1472
LmnI GCTCC 4 cut(s) 403, 1111, 1284, 1336
LweI GCATC 2 cut(s) 210, 450
MaeI CTAG 7 cut(s) 750, 765, 825, 950, 1115, 1344, 1400
MaeII ACGT 2 cut(s) 493, 1244
MaeIII GTNAC 1 cut(s) 1456
MalI GATC 7 cut(s) 392, 555, 600, 640, 977, 1119, 1474
MboI GATC 7 cut(s) 390, 553, 598, 638, 975, 1117, 1472
MboII GAAGA 3 cut(s) 1243, 1377, 1380
MfeI CAATTG 1 cut(s) 6
MhlI GDGCHC 5 cut(s) 96, 493, 612, 685, 1333
MlyI GAGTC 2 cut(s) 436, 478
MmeI TCCRAC 2 cut(s) 464, 1326
Mph1103I ATGCAT 2 cut(s) 322, 326
MseI TTAA 4 cut(s) 807, 861, 1049, 1464
MslI CAYNNNNRTG 4 cut(s) 148, 506, 1005, 1136
MspI CCGG 3 cut(s) 401, 481, 1532
MspR9I CCNGG 2 cut(s) 481, 1533
MunI CAATTG 1 cut(s) 6
Mva1269I GAATGC 1 cut(s) 322
MvnI CGCG 2 cut(s) 226, 1339
MwoI GCNNNNNNNGC 3 cut(s) 497, 834, 1542
NciI CCSGG 2 cut(s) 481, 1533
NcoI CCATGG 1 cut(s) 417
NdeII GATC 7 cut(s) 390, 553, 598, 638, 975, 1117, 1472
NlaIV GGNNCC 7 cut(s) 352, 405, 528, 611, 1375, 1415, 1568
NmeAIII GCCGAG 1 cut(s) 282
NsiI ATGCAT 2 cut(s) 322, 326
NspI RCATGY 3 cut(s) 324, 328, 1030
OliI CACNNNNGTG 1 cut(s) 148
PaeI GCATGC 1 cut(s) 324
PagI TCATGA 1 cut(s) 1087
PcsI WCGNNNNNNNCGW 1 cut(s) 309
PctI GAATGC 1 cut(s) 322
PfeI GAWTC 3 cut(s) 213, 371, 707
PkrI GCNGC 4 cut(s) 225, 465, 1544, 1561
Ple19I CGATCG 1 cut(s) 978
PleI GAGTC 2 cut(s) 436, 477
PpsI GAGTC 2 cut(s) 436, 477
Ppu21I YACGTR 1 cut(s) 494
PpuMI RGGWCCY 2 cut(s) 1373, 1566
Psp124BI GAGCTC 1 cut(s) 96
Psp5II RGGWCCY 2 cut(s) 1373, 1566
PspN4I GGNNCC 7 cut(s) 352, 405, 528, 611, 1375, 1415, 1568
PspPI GGNCC 7 cut(s) 511, 527, 780, 866, 926, 1373, 1566
PspPPI RGGWCCY 2 cut(s) 1373, 1566
PvuI CGATCG 1 cut(s) 978
RsaI GTAC 1 cut(s) 45
RsaNI GTAC 1 cut(s) 44
RseI CAYNNNNRTG 4 cut(s) 148, 506, 1005, 1136
SacI GAGCTC 1 cut(s) 96
SaqAI TTAA 4 cut(s) 807, 861, 1049, 1464
SatI GCNGC 4 cut(s) 224, 464, 1543, 1560
Sau3AI GATC 7 cut(s) 390, 553, 598, 638, 975, 1117, 1472
Sau96I GGNCC 7 cut(s) 511, 527, 780, 866, 926, 1373, 1566
SchI GAGTC 2 cut(s) 436, 478
ScrFI CCNGG 2 cut(s) 481, 1533
SduI GDGCHC 5 cut(s) 96, 493, 612, 685, 1333
SfaNI GCATC 2 cut(s) 210, 450
SfcI CTRYAG 1 cut(s) 1444
SinI GGWCC 4 cut(s) 511, 527, 1373, 1566
SmiMI CAYNNNNRTG 4 cut(s) 148, 506, 1005, 1136
SmlI CTYRAG 1 cut(s) 1492
SmoI CTYRAG 1 cut(s) 1492
SpeI ACTAGT 1 cut(s) 749
SphI GCATGC 1 cut(s) 324
SsiI CCGC 7 cut(s) 224, 463, 466, 920, 1536, 1542, 1560
SspMI CTAG 7 cut(s) 750, 765, 825, 950, 1115, 1344, 1400
SstI GAGCTC 1 cut(s) 96
StyD4I CCNGG 2 cut(s) 479, 1531
StyI CCWWGG 2 cut(s) 417, 914
TaaI ACNGT 6 cut(s) 313, 542, 673, 680, 787, 1462
TaiI ACGT 2 cut(s) 496, 1247
TaqI TCGA 1 cut(s) 186
TauI GCSGC 4 cut(s) 226, 466, 1545, 1562
TfiI GAWTC 3 cut(s) 213, 371, 707
Tru1I TTAA 4 cut(s) 807, 861, 1049, 1464
Tru9I TTAA 4 cut(s) 807, 861, 1049, 1464
TscAI CASTG 3 cut(s) 547, 708, 790
TspDTI ATGAA 3 cut(s) 120, 357, 1053
TspRI CASTG 3 cut(s) 547, 708, 790
VpaK11BI GGWCC 4 cut(s) 511, 527, 1373, 1566
XapI RAATTY 4 cut(s) 117, 344, 365, 847
XbaI TCTAGA 3 cut(s) 764, 1343, 1399
XceI RCATGY 3 cut(s) 324, 328, 1030
XcmI CCANNNNNNNNNTGG 1 cut(s) 1010
XmiI GTMKAC 1 cut(s) 1443
XspI CTAG 7 cut(s) 750, 765, 825, 950, 1115, 1344, 1400
Zsp2I ATGCAT 2 cut(s) 322, 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.