RLG00000017269

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000073
Physical Location & Seq
Forward (+)
14660619 .. 14664770
4152 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017269

Sequence Viewer

Length: 2631 bp
ATGGACCCCGACAATATTTCATGGGTTGAGATGAATAACATAGCCTGGGATTTGGGGTATAGGGAAAAACCAATATCCTACTACTATAAGCTGCCAGGGTCATCAAGTGGTGAAGGGTGGATGAAGCTGCTTGGTGATGGAGATTGTGTAGAGATGATTAATCAACTTCCTAAAAGAAAAAGGATTATTGAAGTTTACATAACTAGGGGTGGACCAAGAAGGAAGAGGGAAGCTGAACTAGATGATGACCATCCACCAGATCCGAGTTGGCATAATCCATTGAATAATGTGGGTACAATAGACAATGAGAATATGATTGATGAGGCTAGTTTGCTTTGCAGCCAATTAAATGCAGAGAGTGACAATGTGGTTGAAGATAGTAATGCTGCTGAGAATGAAGGCCCGGAGGTGGTTGAAGTGTGTGGTACAGCAGATACCCTATTGTCAGTTAGGGACTTTGCAAGTATAGGTGAGGTTGTTAACTTGTTTGGTGATACGCATAGTAGTATAAGGGATGAGGGGCACTCTAGTCATTGCATTGACTTGGAAAAAATAAGTGAAGGAAAAGAATCTAATGTGAAGATGGTGACAAAAGCTGCCAACAAGACATGTGGGGTTGTTGTAGCAGAAAATGAGATGATAAAAGACTCTGGAGCACAGAAGCAAGTTGCAGCACAAAGAGCTAATAATGGGGTGAAAGGGAAGCAAACAGAAGTTGTTGAAGAAGAAGTCGAAGAAAAGAAGGGTCAAGGAAGAAAGGAGGAAAAGATAAGGGAAACAAGTACAATACCAGATAGTGATTACGATCAGAATGGGCATGATGATGAGATTGATTTTGATGAAAATGTAGCCGAGGGGAATAGAGTTGAAGAATATGAAGACATGGGGTATGAAGGGATAATTTCAGAAGATGATGAGTCAGAGGATGAGTTGAAGAATTTGGATGCTTCCGAAACAGAGGAGGATGAACATGGAAATCCGCTTCCCAAGAGCCAACAAAGGAAACTAAAAGCAAAGTCGTGGAGGAGAGAAGTTGATTTGAAGAATCCAAATTTCTGTATTGGTCAAGCTTTTGCAGATAATGAGGTGTTAAAAGAGGCAGTGAGGGAATATGCAATACGAAAACAAAGGGGTTTATGGTTTGACAAGAACAATAAGTATAAGATTCAAGTGAAGTGTCAAGTTGGGTGCCCTTTCTGGTTATATGCTAGCAGAATTGATCCGGAAGATCCAACAATGTATATCAAGACGTTGAGACAAAGCTCCCACAAGCCATCCACAATTGATATGATCAAAACTGCATGGGTAGGCTTTGGAGGTATCAAAATCACAGCCAGGGATCTTTGGAACCCCGCTGACCATCTTTTTGAGATCACTGCCGATGATGAAAATGTGGCCAAGCTGATTCTAGACAACTCCCCATGGACCATCAAAGGCTTCTCCCTTCATGTCCAGGTGTGGCCTCCCACTTTAGCTATTGAAGAACTACCATCTCATGAAATCGCTTTCTGGGTTCAAATGATGGGTGTCCCTCCCTATATGTCTACTGTATCAAATGTGAGAGGAATGGTAGAAAGATTTGGTGCTTTCATTGAGATGGAGGATCCCCTAGAAGGGGAGGAGGGTACTTTCCCCTTCCTTAGAGTTCGTATGCTAATTGATGCTAGGAAACCCATACCTACTGGTTTCAAGCTTCCAAGAGAGAATGGGTCTGTTTCTTGGGTGGAATTCCAGTACGAGAAGTTGGCAAAATTTTGTTTCGTATGCGGAAGACTTGGTCATGTGGACTCTTCTAGATTCCCATGCCCCAATGGTCGTGAACTAGGGTATGAAGAAGAAGAATATGGAGCTTTCATGGCTATTGACGCCCTCCGCCGTCCAGTTATTCCTCCAAACACCCCTCAGTCGGAAACTCGGCCTGCCCGTCGGAGATCTGCTGGACAAGTAATTGGTCCACCGGGTTTTGAAACTACTAGACAGAGGCCCACTTCTCAATGCACCCTGAGCAATAAAAGTCACATGACCGTTGAGAAATGCAGTGTGGAGTGGCACGAACCCCACAATCCTGACAGAGTCATCACCGCATCAACTTTGCCGTGTTCAACTAAAGGTAATCCTGCTCCTAGTCAGACCATATCCTTTCCTTCTCTGTCACTGCAACCCCAACAATCTCCCTTAGTTAACTCAAGGAATCCTATGTTCTCCATCCCAAACCATGTGAATTTTTGGCCAAATTATCCCCACCTCATGCAGATGCCTACGGGTGCTACACTACCCCATCACATGGCAATGCAATTCCATGCATACCCATCCATGGTTGAGTATTTTTCCAAGTTAGCAAACCAAGGGTACCACAACCAACCCACTTACCAGAACTACCCTTCTTCTAGCCAAGGCCCAATCTCTCTAAAAAGAGCCTCCCCACATGTGAACACATTGGGTCCAAACAAAACACGTTCCCGAAAGAAATATAAACGTGTCACCATACCTAAACCAAGCATTTTGAAAGAACAAGGTGATGTGGCTACTAATGAGCTTAGCTCAAGTGAGGAGGCTTCTGATGCTTCAATGGTTGGAGGCATTTCCCTTCAAGGCGGTGGTGGCTGGCCAACAGCCACAAGGTCACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1

Protein Analysis

877

Amino Acids

98.35

Weight (kDa)

5.26

Isoelectric Point (pI)

46.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1-like PF26130 1 - 68 1.4e-06 PB1-like domain
DBD_Tnp_Mut PF03108 353 - 406 1.2e-07 MuDR family transposase
zf-CCHC_4 PF14392 553 - 597 2.7e-12 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 2349
AccB1I GGYRCC 2 cut(s) 1188, 2349
AccB7I CCANNNNNTGG 1 cut(s) 2284
AccI GTMKAC 1 cut(s) 1544
AccIII TCCGGA 1 cut(s) 1222
AciI CCGC 6 cut(s) 980, 1353, 1767, 1873, 2082, 2595
AclWI GGATC 6 cut(s) 254, 1214, 1223, 1347, 1598, 1611
AcoI YGGCCR 3 cut(s) 1395, 2228, 2606
AcsI RAATTY 5 cut(s) 937, 1051, 1727, 1751, 2221
AcyI GRCGYC 1 cut(s) 1866
AfaI GTAC 6 cut(s) 295, 427, 784, 1627, 1736, 2351
AfiI CCNNNNNNNGG 7 cut(s) 409, 1613, 1614, 1615, 1906, 2284, 2314
AflIII ACRYGT 4 cut(s) 608, 2425, 2453, 2476
AjnI CCWGG 4 cut(s) 44, 94, 1334, 1452
Alw21I GWGCWC 1 cut(s) 658
Alw26I GTCTC 1 cut(s) 1249
AlwI GGATC 6 cut(s) 254, 1214, 1223, 1347, 1598, 1611
Aor13HI TCCGGA 1 cut(s) 1222
AoxI GGCC 8 cut(s) 400, 1395, 1460, 1916, 1982, 2228, 2395, 2606
ApeKI GCWGC 6 cut(s) 91, 127, 339, 386, 596, 671
ApoI RAATTY 5 cut(s) 937, 1051, 1727, 1751, 2221
ArsI GACNNNNNNTTYG 2 cut(s) 1349, 1381
AseI ATTAAT 1 cut(s) 159
Asp718I GGTACC 1 cut(s) 2349
AspS9I GGNCC 8 cut(s) 4, 212, 401, 1425, 1952, 1983, 2396, 2441
AsuC2I CCSGG 2 cut(s) 404, 1959
AsuNHI GCTAGC 1 cut(s) 1208
AvaII GGWCC 5 cut(s) 4, 212, 1425, 1952, 2441
BaeGI GKGCMC 2 cut(s) 525, 1193
BalI TGGCCA 3 cut(s) 1397, 2230, 2608
BamHI GGATCC 1 cut(s) 1603
BanI GGYRCC 2 cut(s) 1188, 2349
BbsI GAAGAC 2 cut(s) 885, 1777
Bbv12I GWGCWC 1 cut(s) 658
BbvI GCAGC 6 cut(s) 78, 114, 351, 373, 583, 683
BceAI ACGGC 2 cut(s) 1860, 2080
BciT130I CCWGG 4 cut(s) 46, 96, 1336, 1454
BclI TGATCA 1 cut(s) 1290
BcnI CCSGG 2 cut(s) 404, 1959
BcoDI GTCTC 1 cut(s) 1249
BglII AGATCT 1 cut(s) 1931
BisI GCNGC 6 cut(s) 92, 128, 340, 387, 597, 672
BlpI GCTNAGC 1 cut(s) 2537
BlsI GCNGC 6 cut(s) 93, 129, 341, 388, 598, 673
Bme1390I CCNGG 6 cut(s) 46, 96, 404, 1336, 1454, 1959
Bme18I GGWCC 5 cut(s) 4, 212, 1425, 1952, 2441
BmgT120I GGNCC 8 cut(s) 4, 212, 401, 1425, 1952, 1983, 2396, 2441
BmiI GGNNCC 6 cut(s) 6, 1190, 1349, 1605, 2351, 2442
BmrFI CCNGG 6 cut(s) 46, 96, 404, 1336, 1454, 1959
BmsI GCATC 5 cut(s) 934, 1651, 2093, 2244, 2551
BmtI GCTAGC 1 cut(s) 1212
BpiI GAAGAC 2 cut(s) 885, 1777
BplI GAGNNNNNCTC 4 cut(s) 509, 541, 2525, 2557
BpmI CTGGAG 1 cut(s) 672
Bpu10I CCTNAGC 1 cut(s) 2003
Bpu1102I GCTNAGC 1 cut(s) 2537
BpuEI CTTGAG 2 cut(s) 2170, 2527
BpuMI CCSGG 2 cut(s) 404, 1959
BsaBI GATNNNNATC 2 cut(s) 249, 804
BsaHI GRCGYC 1 cut(s) 1866
BsaJI CCNNGG 8 cut(s) 45, 95, 852, 1335, 1421, 2313, 2344, 2392
BsaWI WCCGGW 1 cut(s) 1222
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bsc4I CCNNNNNNNGG 7 cut(s) 409, 1613, 1614, 1615, 1906, 2284, 2314
Bse1I ACTGG 3 cut(s) 1687, 1732, 1880
Bse3DI GCAATG 2 cut(s) 532, 2295
Bse8I GATNNNNATC 2 cut(s) 249, 804
BseAI TCCGGA 1 cut(s) 1222
BseBI CCWGG 4 cut(s) 46, 96, 1336, 1454
BseDI CCNNGG 8 cut(s) 45, 95, 852, 1335, 1421, 2313, 2344, 2392
BseGI GGATG 9 cut(s) 126, 250, 520, 931, 949, 970, 1274, 2205, 2309
BseJI GATNNNNATC 2 cut(s) 249, 804
BseLI CCNNNNNNNGG 7 cut(s) 409, 1613, 1614, 1615, 1906, 2284, 2314
BseMI GCAATG 2 cut(s) 532, 2295
BseMII CTCAG 3 cut(s) 381, 1916, 1994
BseNI ACTGG 3 cut(s) 1687, 1732, 1880
BseRI GAGGAG 4 cut(s) 974, 1039, 1634, 2564
BseSI GKGCMC 2 cut(s) 525, 1193
BseXI GCAGC 6 cut(s) 78, 114, 351, 373, 583, 683
BshFI GGCC 8 cut(s) 402, 1397, 1462, 1918, 1984, 2230, 2397, 2608
BshNI GGYRCC 2 cut(s) 1188, 2349
BsiHKAI GWGCWC 1 cut(s) 658
BsiSI CCGG 3 cut(s) 404, 1223, 1958
BslFI GGGAC 2 cut(s) 467, 1514
BslI CCNNNNNNNGG 7 cut(s) 409, 1613, 1614, 1615, 1906, 2284, 2314
BsmAI GTCTC 1 cut(s) 1249
BsmFI GGGAC 2 cut(s) 467, 1514
BsnI GGCC 8 cut(s) 402, 1397, 1462, 1918, 1984, 2230, 2397, 2608
Bsp1286I GDGCHC 3 cut(s) 525, 658, 1193
Bsp13I TCCGGA 1 cut(s) 1222
Bsp143I GATC 9 cut(s) 259, 805, 1219, 1228, 1290, 1339, 1371, 1603, 1931
Bsp1720I GCTNAGC 1 cut(s) 2537
Bsp19I CCATGG 2 cut(s) 1421, 2313
BspACI CCGC 6 cut(s) 980, 1353, 1767, 1873, 2082, 2595
BspANI GGCC 8 cut(s) 402, 1397, 1462, 1918, 1984, 2230, 2397, 2608
BspCNI CTCAG 3 cut(s) 382, 1915, 1995
BspEI TCCGGA 1 cut(s) 1222
BspHI TCATGA 1 cut(s) 1495
BspLI GGNNCC 6 cut(s) 6, 1190, 1349, 1605, 2351, 2442
BspOI GCTAGC 1 cut(s) 1212
BspPI GGATC 6 cut(s) 254, 1214, 1223, 1347, 1598, 1611
BspT107I GGYRCC 2 cut(s) 1188, 2349
BsrDI GCAATG 2 cut(s) 532, 2295
BsrI ACTGG 3 cut(s) 1687, 1732, 1880
BssECI CCNNGG 8 cut(s) 45, 95, 852, 1335, 1421, 2313, 2344, 2392
BssMI GATC 9 cut(s) 259, 805, 1219, 1228, 1290, 1339, 1371, 1603, 1931
BssNI GRCGYC 1 cut(s) 1866
BssT1I CCWWGG 4 cut(s) 1421, 2313, 2344, 2392
Bst2UI CCWGG 4 cut(s) 46, 96, 1336, 1454
Bst4CI ACNGT 2 cut(s) 1549, 2026
Bst6I CTCTTC 2 cut(s) 218, 1795
BstACI GRCGYC 1 cut(s) 1866
BstC8I GCNNGC 3 cut(s) 1210, 1920, 2606
BstDEI CTNAG 6 cut(s) 390, 1640, 1902, 2003, 2176, 2537
BstDSI CCRYGG 2 cut(s) 1421, 2313
BstEII GGTNACC 1 cut(s) 2622
BstF5I GGATG 9 cut(s) 126, 250, 520, 931, 949, 970, 1274, 2205, 2309
BstKTI GATC 9 cut(s) 262, 808, 1222, 1231, 1293, 1342, 1374, 1606, 1934
BstMAI GTCTC 1 cut(s) 1249
BstMBI GATC 9 cut(s) 259, 805, 1219, 1228, 1290, 1339, 1371, 1603, 1931
BstMWI GCNNNNNNNGC 6 cut(s) 680, 1856, 1865, 2004, 2561, 2601
BstNI CCWGG 4 cut(s) 46, 96, 1336, 1454
BstNSI RCATGY 2 cut(s) 612, 2429
BstPI GGTNACC 1 cut(s) 2622
BstSCI CCNGG 6 cut(s) 44, 94, 402, 1334, 1452, 1957
BstSLI GKGCMC 2 cut(s) 525, 1193
BstV1I GCAGC 6 cut(s) 78, 114, 351, 373, 583, 683
BstV2I GAAGAC 2 cut(s) 885, 1777
BstX2I RGATCY 5 cut(s) 259, 1228, 1339, 1603, 1931
BstYI RGATCY 5 cut(s) 259, 1228, 1339, 1603, 1931
BsuRI GGCC 8 cut(s) 402, 1397, 1462, 1918, 1984, 2230, 2397, 2608
BtgI CCRYGG 2 cut(s) 1421, 2313
BtsCI GGATG 9 cut(s) 126, 250, 520, 931, 949, 970, 1274, 2205, 2309
BtsI GCAGTG 4 cut(s) 1107, 1374, 2044, 2153
BtsIMutI CAGTG 4 cut(s) 1107, 1374, 2044, 2153
Cac8I GCNNGC 3 cut(s) 1210, 1920, 2606
CciI TCATGA 1 cut(s) 1495
Cfr13I GGNCC 8 cut(s) 4, 212, 401, 1425, 1952, 1983, 2396, 2441
CseI GACGC 1 cut(s) 1874
Csp6I GTAC 6 cut(s) 294, 426, 783, 1626, 1735, 2350
CspCI CAANNNNNGTGG 2 cut(s) 592, 627
CviQI GTAC 6 cut(s) 294, 426, 783, 1626, 1735, 2350
DdeI CTNAG 6 cut(s) 390, 1640, 1902, 2003, 2176, 2537
DpnI GATC 9 cut(s) 261, 807, 1221, 1230, 1292, 1341, 1373, 1605, 1933
DpnII GATC 9 cut(s) 259, 805, 1219, 1228, 1290, 1339, 1371, 1603, 1931
EaeI YGGCCR 3 cut(s) 1395, 2228, 2606
Eam1104I CTCTTC 2 cut(s) 218, 1795
EarI CTCTTC 2 cut(s) 218, 1795
EciI GGCGGA 1 cut(s) 1862
Eco130I CCWWGG 4 cut(s) 1421, 2313, 2344, 2392
Eco47I GGWCC 5 cut(s) 4, 212, 1425, 1952, 2441
Eco91I GGTNACC 1 cut(s) 2622
EcoO65I GGTNACC 1 cut(s) 2622
EcoRI GAATTC 1 cut(s) 1727
EcoRII CCWGG 4 cut(s) 44, 94, 1334, 1452
EcoT14I CCWWGG 4 cut(s) 1421, 2313, 2344, 2392
EcoT22I ATGCAT 1 cut(s) 2305
ErhI CCWWGG 4 cut(s) 1421, 2313, 2344, 2392
FaqI GGGAC 2 cut(s) 467, 1514
FauI CCCGC 1 cut(s) 1360
FbaI TGATCA 1 cut(s) 1290
FblI GTMKAC 1 cut(s) 1544
Fnu4HI GCNGC 6 cut(s) 92, 128, 340, 387, 597, 672
FokI GGATG 9 cut(s) 133, 237, 527, 938, 956, 977, 1261, 2192, 2296
Fsp4HI GCNGC 6 cut(s) 92, 128, 340, 387, 597, 672
GluI GCNGC 6 cut(s) 92, 128, 340, 387, 597, 672
GsuI CTGGAG 1 cut(s) 672
HaeIII GGCC 8 cut(s) 402, 1397, 1462, 1918, 1984, 2230, 2397, 2608
HapII CCGG 3 cut(s) 404, 1223, 1958
HgaI GACGC 1 cut(s) 1874
Hin1I GRCGYC 1 cut(s) 1866
HincII GTYRAC 2 cut(s) 481, 2182
HindII GTYRAC 2 cut(s) 481, 2182
HindIII AAGCTT 2 cut(s) 1068, 1691
HpaI GTTAAC 2 cut(s) 481, 2182
HpaII CCGG 3 cut(s) 404, 1223, 1958
Hpy166II GTNNAC 9 cut(s) 196, 212, 481, 1545, 1786, 1820, 1955, 2182, 2431
Hpy188I TCNGA 9 cut(s) 264, 810, 907, 922, 952, 1909, 1929, 2130, 2560
Hpy188III TCNNGA 9 cut(s) 651, 1223, 1246, 1409, 1496, 1794, 1817, 2066, 2460
Hpy8I GTNNAC 9 cut(s) 196, 212, 481, 1545, 1786, 1820, 1955, 2182, 2431
Hpy99I CGWCG 1 cut(s) 1929
HpyCH4III ACNGT 2 cut(s) 1549, 2026
HpyCH4IV ACGT 3 cut(s) 1250, 2455, 2476
HpyF10VI GCNNNNNNNGC 6 cut(s) 680, 1856, 1865, 2004, 2561, 2601
HpyF3I CTNAG 6 cut(s) 390, 1640, 1902, 2003, 2176, 2537
HpySE526I ACGT 3 cut(s) 1250, 2455, 2476
Hsp92I GRCGYC 1 cut(s) 1866
Kpn2I TCCGGA 1 cut(s) 1222
KpnI GGTACC 1 cut(s) 2353
Ksp22I TGATCA 1 cut(s) 1290
KspAI GTTAAC 2 cut(s) 481, 2182
Kzo9I GATC 9 cut(s) 259, 805, 1219, 1228, 1290, 1339, 1371, 1603, 1931
LmnI GCTCC 4 cut(s) 653, 1268, 1847, 2125
Lsp1109I GCAGC 6 cut(s) 78, 114, 351, 373, 583, 683
LweI GCATC 5 cut(s) 934, 1651, 2093, 2244, 2551
MaeII ACGT 3 cut(s) 1250, 2455, 2476
MaeIII GTNAC 6 cut(s) 359, 586, 2015, 2151, 2479, 2622
MalI GATC 9 cut(s) 261, 807, 1221, 1230, 1292, 1341, 1373, 1605, 1933
MboI GATC 9 cut(s) 259, 805, 1219, 1228, 1290, 1339, 1371, 1603, 1931
MfeI CAATTG 1 cut(s) 1281
MflI RGATCY 5 cut(s) 259, 1228, 1339, 1603, 1931
MhlI GDGCHC 3 cut(s) 525, 658, 1193
MlsI TGGCCA 3 cut(s) 1397, 2230, 2608
MluNI TGGCCA 3 cut(s) 1397, 2230, 2608
MlyI GAGTC 4 cut(s) 641, 926, 1781, 2082
MmeI TCCRAC 4 cut(s) 1256, 1887, 1907, 2554
Mox20I TGGCCA 3 cut(s) 1397, 2230, 2608
Mph1103I ATGCAT 1 cut(s) 2305
MroI TCCGGA 1 cut(s) 1222
MscI TGGCCA 3 cut(s) 1397, 2230, 2608
MseI TTAA 5 cut(s) 159, 347, 480, 1091, 2181
MslI CAYNNNNRTG 4 cut(s) 822, 1595, 2252, 2288
Msp20I TGGCCA 3 cut(s) 1397, 2230, 2608
MspA1I CMGCKG 1 cut(s) 1355
MspI CCGG 3 cut(s) 404, 1223, 1958
MspR9I CCNGG 6 cut(s) 46, 96, 404, 1336, 1454, 1959
MunI CAATTG 1 cut(s) 1281
MvaI CCWGG 4 cut(s) 46, 96, 1336, 1454
MwoI GCNNNNNNNGC 6 cut(s) 680, 1856, 1865, 2004, 2561, 2601
NciI CCSGG 2 cut(s) 404, 1959
NcoI CCATGG 2 cut(s) 1421, 2313
NdeII GATC 9 cut(s) 259, 805, 1219, 1228, 1290, 1339, 1371, 1603, 1931
NheI GCTAGC 1 cut(s) 1208
NlaIV GGNNCC 6 cut(s) 6, 1190, 1349, 1605, 2351, 2442
NmeAIII GCCGAG 2 cut(s) 877, 1894
NmuCI GTSAC 6 cut(s) 359, 586, 2015, 2151, 2479, 2622
NsiI ATGCAT 1 cut(s) 2305
NspI RCATGY 2 cut(s) 612, 2429
PagI TCATGA 1 cut(s) 1495
PciI ACATGT 2 cut(s) 608, 2425
PcsI WCGNNNNNNNCGW 1 cut(s) 1921
PfeI GAWTC 6 cut(s) 569, 1045, 1165, 1405, 1797, 2191
PflFI GACNNNGTC 2 cut(s) 1776, 2072
PflMI CCANNNNNTGG 1 cut(s) 2284
PkrI GCNGC 6 cut(s) 93, 129, 341, 388, 598, 673
PleI GAGTC 4 cut(s) 641, 925, 1781, 2081
PpsI GAGTC 4 cut(s) 641, 925, 1781, 2081
PscI ACATGT 2 cut(s) 608, 2425
PshBI ATTAAT 1 cut(s) 159
Psp6I CCWGG 4 cut(s) 44, 94, 1334, 1452
PspEI GGTNACC 1 cut(s) 2622
PspGI CCWGG 4 cut(s) 44, 94, 1334, 1452
PspN4I GGNNCC 6 cut(s) 6, 1190, 1349, 1605, 2351, 2442
PspPI GGNCC 8 cut(s) 4, 212, 401, 1425, 1952, 1983, 2396, 2441
PsuI RGATCY 5 cut(s) 259, 1228, 1339, 1603, 1931
PsyI GACNNNGTC 2 cut(s) 1776, 2072
RsaI GTAC 6 cut(s) 295, 427, 784, 1627, 1736, 2351
RsaNI GTAC 6 cut(s) 294, 426, 783, 1626, 1735, 2350
RseI CAYNNNNRTG 4 cut(s) 822, 1595, 2252, 2288
SaqAI TTAA 5 cut(s) 159, 347, 480, 1091, 2181
SatI GCNGC 6 cut(s) 92, 128, 340, 387, 597, 672
Sau3AI GATC 9 cut(s) 259, 805, 1219, 1228, 1290, 1339, 1371, 1603, 1931
Sau96I GGNCC 8 cut(s) 4, 212, 401, 1425, 1952, 1983, 2396, 2441
SchI GAGTC 4 cut(s) 641, 926, 1781, 2082
ScrFI CCNGG 6 cut(s) 46, 96, 404, 1336, 1454, 1959
SduI GDGCHC 3 cut(s) 525, 658, 1193
SfaNI GCATC 5 cut(s) 934, 1651, 2093, 2244, 2551
SinI GGWCC 5 cut(s) 4, 212, 1425, 1952, 2441
SmiMI CAYNNNNRTG 4 cut(s) 822, 1595, 2252, 2288
SmlI CTYRAG 2 cut(s) 2185, 2542
SmoI CTYRAG 2 cut(s) 2185, 2542
SsiI CCGC 6 cut(s) 980, 1353, 1767, 1873, 2082, 2595
SspI AATATT 1 cut(s) 16
StyD4I CCNGG 6 cut(s) 44, 94, 402, 1334, 1452, 1957
StyI CCWWGG 4 cut(s) 1421, 2313, 2344, 2392
TaaI ACNGT 2 cut(s) 1549, 2026
TaiI ACGT 3 cut(s) 1253, 2458, 2479
TaqI TCGA 1 cut(s) 732
TatI WGTACW 1 cut(s) 782
TfiI GAWTC 6 cut(s) 569, 1045, 1165, 1405, 1797, 2191
Tru1I TTAA 5 cut(s) 159, 347, 480, 1091, 2181
Tru9I TTAA 5 cut(s) 159, 347, 480, 1091, 2181
TscAI CASTG 4 cut(s) 1107, 1381, 2044, 2160
TseFI GTSAC 6 cut(s) 359, 586, 2015, 2151, 2479, 2622
TseI GCWGC 6 cut(s) 91, 127, 339, 386, 596, 671
Tsp45I GTSAC 6 cut(s) 359, 586, 2015, 2151, 2479, 2622
TspRI CASTG 4 cut(s) 1107, 1381, 2044, 2160
Tth111I GACNNNGTC 2 cut(s) 1776, 2072
Van91I CCANNNNNTGG 1 cut(s) 2284
VpaK11BI GGWCC 5 cut(s) 4, 212, 1425, 1952, 2441
VspI ATTAAT 1 cut(s) 159
XapI RAATTY 5 cut(s) 937, 1051, 1727, 1751, 2221
XbaI TCTAGA 2 cut(s) 1408, 1793
XceI RCATGY 2 cut(s) 612, 2429
XcmI CCANNNNNNNNNTGG 1 cut(s) 264
XmiI GTMKAC 1 cut(s) 1544
Zsp2I ATGCAT 1 cut(s) 2305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.