Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 398 |
| AccII | CGCG | 2 cut(s) | 189, 246 |
| AcoI | YGGCCR | 3 cut(s) | 261, 283, 344 |
| AcsI | RAATTY | 1 cut(s) | 175 |
| AcvI | CACGTG | 1 cut(s) | 199 |
| AfaI | GTAC | 1 cut(s) | 229 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 266 |
| AgsI | TTSAA | 2 cut(s) | 151, 172 |
| AjiI | CACGTC | 1 cut(s) | 290 |
| AluBI | AGCT | 3 cut(s) | 363, 420, 470 |
| AluI | AGCT | 3 cut(s) | 363, 420, 470 |
| Alw26I | GTCTC | 1 cut(s) | 325 |
| AoxI | GGCC | 5 cut(s) | 20, 261, 283, 344, 446 |
| ApeKI | GCWGC | 1 cut(s) | 72 |
| ApoI | RAATTY | 1 cut(s) | 175 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 176 |
| AspS9I | GGNCC | 3 cut(s) | 141, 257, 279 |
| AsuHPI | GGTGA | 1 cut(s) | 172 |
| AvaII | GGWCC | 3 cut(s) | 141, 257, 279 |
| BbrPI | CACGTG | 1 cut(s) | 199 |
| BbvCI | CCTCAGC | 1 cut(s) | 416 |
| BbvI | GCAGC | 1 cut(s) | 59 |
| BccI | CCATC | 1 cut(s) | 212 |
| BceAI | ACGGC | 2 cut(s) | 172, 248 |
| BcoDI | GTCTC | 1 cut(s) | 325 |
| BisI | GCNGC | 3 cut(s) | 70, 73, 108 |
| BlsI | GCNGC | 3 cut(s) | 71, 74, 109 |
| Bme18I | GGWCC | 3 cut(s) | 141, 257, 279 |
| BmgBI | CACGTC | 1 cut(s) | 290 |
| BmgT120I | GGNCC | 3 cut(s) | 141, 257, 279 |
| BmiI | GGNNCC | 1 cut(s) | 142 |
| BmsI | GCATC | 1 cut(s) | 211 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 305, 337 |
| Bpu10I | CCTNAGC | 1 cut(s) | 416 |
| BsaAI | YACGTR | 1 cut(s) | 199 |
| BsaI | GGTCTC | 1 cut(s) | 325 |
| BsaJI | CCNNGG | 1 cut(s) | 250 |
| BsaWI | WCCGGW | 1 cut(s) | 476 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 86, 105, 116, 135, 349, 379 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 266 |
| Bse118I | RCCGGY | 1 cut(s) | 22 |
| Bse3DI | GCAATG | 1 cut(s) | 64 |
| BseDI | CCNNGG | 1 cut(s) | 250 |
| BseGI | GGATG | 1 cut(s) | 202 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 266 |
| BseMI | GCAATG | 1 cut(s) | 64 |
| BseMII | CTCAG | 1 cut(s) | 430 |
| BseRI | GAGGAG | 5 cut(s) | 67, 70, 73, 113, 179 |
| BseX3I | CGGCCG | 2 cut(s) | 261, 283 |
| BseXI | GCAGC | 1 cut(s) | 59 |
| Bsh1236I | CGCG | 2 cut(s) | 189, 246 |
| Bsh1285I | CGRYCG | 2 cut(s) | 264, 286 |
| BshFI | GGCC | 5 cut(s) | 22, 263, 285, 346, 448 |
| BsiEI | CGRYCG | 2 cut(s) | 264, 286 |
| BsiSI | CCGG | 5 cut(s) | 23, 260, 282, 328, 477 |
| BslFI | GGGAC | 1 cut(s) | 154 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 266 |
| BsmAI | GTCTC | 1 cut(s) | 325 |
| BsmFI | GGGAC | 1 cut(s) | 154 |
| BsnI | GGCC | 5 cut(s) | 22, 263, 285, 346, 448 |
| Bso31I | GGTCTC | 1 cut(s) | 325 |
| Bsp143I | GATC | 1 cut(s) | 404 |
| BspANI | GGCC | 5 cut(s) | 22, 263, 285, 346, 448 |
| BspCNI | CTCAG | 1 cut(s) | 429 |
| BspFNI | CGCG | 2 cut(s) | 189, 246 |
| BspLI | GGNNCC | 1 cut(s) | 142 |
| BspTNI | GGTCTC | 1 cut(s) | 325 |
| BsrDI | GCAATG | 1 cut(s) | 64 |
| BsrFI | RCCGGY | 1 cut(s) | 22 |
| BssAI | RCCGGY | 1 cut(s) | 22 |
| BssECI | CCNNGG | 1 cut(s) | 250 |
| BssMI | GATC | 1 cut(s) | 404 |
| Bst4CI | ACNGT | 1 cut(s) | 279 |
| Bst6I | CTCTTC | 1 cut(s) | 131 |
| BstBAI | YACGTR | 1 cut(s) | 199 |
| BstDEI | CTNAG | 1 cut(s) | 416 |
| BstF5I | GGATG | 1 cut(s) | 202 |
| BstFNI | CGCG | 2 cut(s) | 189, 246 |
| BstKTI | GATC | 1 cut(s) | 407 |
| BstMAI | GTCTC | 1 cut(s) | 325 |
| BstMBI | GATC | 1 cut(s) | 404 |
| BstMCI | CGRYCG | 2 cut(s) | 264, 286 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 343 |
| BstUI | CGCG | 2 cut(s) | 189, 246 |
| BstV1I | GCAGC | 1 cut(s) | 59 |
| BstZI | CGGCCG | 2 cut(s) | 261, 283 |
| BsuRI | GGCC | 5 cut(s) | 22, 263, 285, 346, 448 |
| BtgZI | GCGATG | 1 cut(s) | 231 |
| BtrI | CACGTC | 1 cut(s) | 290 |
| BtsCI | GGATG | 1 cut(s) | 202 |
| Cfr10I | RCCGGY | 1 cut(s) | 22 |
| Cfr13I | GGNCC | 3 cut(s) | 141, 257, 279 |
| CpoI | CGGWCCG | 1 cut(s) | 279 |
| CseI | GACGC | 2 cut(s) | 178, 235 |
| Csp6I | GTAC | 1 cut(s) | 228 |
| CspI | CGGWCCG | 1 cut(s) | 279 |
| CviJI | RGCY | 8 cut(s) | 22, 263, 285, 346, 363, 420, 448, 470 |
| CviKI_1 | RGCY | 8 cut(s) | 22, 263, 285, 346, 363, 420, 448, 470 |
| CviQI | GTAC | 1 cut(s) | 228 |
| DdeI | CTNAG | 1 cut(s) | 416 |
| DpnI | GATC | 1 cut(s) | 406 |
| DpnII | GATC | 1 cut(s) | 404 |
| EaeI | YGGCCR | 3 cut(s) | 261, 283, 344 |
| EagI | CGGCCG | 2 cut(s) | 261, 283 |
| Eam1104I | CTCTTC | 1 cut(s) | 131 |
| EarI | CTCTTC | 1 cut(s) | 131 |
| EciI | GGCGGA | 4 cut(s) | 94, 357, 363, 441 |
| EclXI | CGGCCG | 2 cut(s) | 261, 283 |
| Eco31I | GGTCTC | 1 cut(s) | 325 |
| Eco47I | GGWCC | 3 cut(s) | 141, 257, 279 |
| Eco52I | CGGCCG | 2 cut(s) | 261, 283 |
| Eco72I | CACGTG | 1 cut(s) | 199 |
| FaiI | YATR | 1 cut(s) | 409 |
| FaqI | GGGAC | 1 cut(s) | 154 |
| FauI | CCCGC | 1 cut(s) | 131 |
| FblI | GTMKAC | 1 cut(s) | 398 |
| Fnu4HI | GCNGC | 3 cut(s) | 70, 73, 108 |
| FokI | GGATG | 1 cut(s) | 189 |
| Fsp4HI | GCNGC | 3 cut(s) | 70, 73, 108 |
| GluI | GCNGC | 3 cut(s) | 70, 73, 108 |
| HaeIII | GGCC | 5 cut(s) | 22, 263, 285, 346, 448 |
| HapII | CCGG | 5 cut(s) | 23, 260, 282, 328, 477 |
| HgaI | GACGC | 2 cut(s) | 178, 235 |
| HpaII | CCGG | 5 cut(s) | 23, 260, 282, 328, 477 |
| HphI | GGTGA | 1 cut(s) | 172 |
| Hpy166II | GTNNAC | 1 cut(s) | 399 |
| Hpy188I | TCNGA | 2 cut(s) | 269, 426 |
| Hpy188III | TCNNGA | 1 cut(s) | 432 |
| Hpy8I | GTNNAC | 1 cut(s) | 399 |
| Hpy99I | CGWCG | 4 cut(s) | 158, 194, 269, 291 |
| HpyAV | CCTTC | 6 cut(s) | 12, 126, 157, 319, 334, 465 |
| HpyCH4III | ACNGT | 1 cut(s) | 279 |
| HpyCH4IV | ACGT | 2 cut(s) | 198, 289 |
| HpyCH4V | TGCA | 1 cut(s) | 202 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 343 |
| HpyF3I | CTNAG | 1 cut(s) | 416 |
| HpySE526I | ACGT | 2 cut(s) | 198, 289 |
| Kzo9I | GATC | 1 cut(s) | 404 |
| LmnI | GCTCC | 2 cut(s) | 80, 465 |
| LpnPI | CCDG | 7 cut(s) | 36, 120, 226, 273, 295, 341, 373 |
| Lsp1109I | GCAGC | 1 cut(s) | 59 |
| LweI | GCATC | 1 cut(s) | 211 |
| MaeII | ACGT | 2 cut(s) | 198, 289 |
| MaeIII | GTNAC | 1 cut(s) | 386 |
| MalI | GATC | 1 cut(s) | 406 |
| MboI | GATC | 1 cut(s) | 404 |
| MboII | GAAGA | 4 cut(s) | 118, 121, 184, 234 |
| MfeI | CAATTG | 1 cut(s) | 332 |
| MluCI | AATT | 2 cut(s) | 175, 332 |
| MmeI | TCCRAC | 2 cut(s) | 247, 449 |
| MroXI | GAANNNNTTC | 1 cut(s) | 176 |
| MspA1I | CMGCKG | 1 cut(s) | 72 |
| MspI | CCGG | 5 cut(s) | 23, 260, 282, 328, 477 |
| MunI | CAATTG | 1 cut(s) | 332 |
| MvnI | CGCG | 2 cut(s) | 189, 246 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 343 |
| NdeII | GATC | 1 cut(s) | 404 |
| NlaIV | GGNNCC | 1 cut(s) | 142 |
| NmeAIII | GCCGAG | 1 cut(s) | 259 |
| NmuCI | GTSAC | 1 cut(s) | 386 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 283 |
| PdmI | GAANNNNTTC | 1 cut(s) | 176 |
| PkrI | GCNGC | 3 cut(s) | 71, 74, 109 |
| PmaCI | CACGTG | 1 cut(s) | 199 |
| PmlI | CACGTG | 1 cut(s) | 199 |
| Ppu21I | YACGTR | 1 cut(s) | 199 |
| PspCI | CACGTG | 1 cut(s) | 199 |
| PspN4I | GGNNCC | 1 cut(s) | 142 |
| PspPI | GGNCC | 3 cut(s) | 141, 257, 279 |
| RsaI | GTAC | 1 cut(s) | 229 |
| RsaNI | GTAC | 1 cut(s) | 228 |
| Rsr2I | CGGWCCG | 1 cut(s) | 279 |
| RsrII | CGGWCCG | 1 cut(s) | 279 |
| SatI | GCNGC | 3 cut(s) | 70, 73, 108 |
| Sau3AI | GATC | 1 cut(s) | 404 |
| Sau96I | GGNCC | 3 cut(s) | 141, 257, 279 |
| SetI | ASST | 8 cut(s) | 118, 201, 292, 311, 365, 422, 431, 472 |
| SfaNI | GCATC | 1 cut(s) | 211 |
| SinI | GGWCC | 3 cut(s) | 141, 257, 279 |
| Sse9I | AATT | 2 cut(s) | 175, 332 |
| TaaI | ACNGT | 1 cut(s) | 279 |
| TaiI | ACGT | 2 cut(s) | 201, 292 |
| TaqI | TCGA | 2 cut(s) | 312, 433 |
| TasI | AATT | 2 cut(s) | 175, 332 |
| TauI | GCSGC | 2 cut(s) | 72, 110 |
| TseFI | GTSAC | 1 cut(s) | 386 |
| TseI | GCWGC | 1 cut(s) | 72 |
| Tsp45I | GTSAC | 1 cut(s) | 386 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspGWI | ACGGA | 1 cut(s) | 384 |
| VpaK11BI | GGWCC | 3 cut(s) | 141, 257, 279 |
| XapI | RAATTY | 1 cut(s) | 175 |
| XmiI | GTMKAC | 1 cut(s) | 398 |
| XmnI | GAANNNNTTC | 1 cut(s) | 176 |