FvH4_3g35060

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000073
Physical Location & Seq
Reverse (-)
30271515 .. 30275319
3805 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g35060.t1

Sequence Viewer

Length: 2664 bp
ATGCCGTTGTGGATCCTTTCTCTAAGTAACAATCAGCTATCTGGAGAGTTCCCTCGAGCATGGAGTTTGTGGAGCGAAATCGATGTTGTGGATGTCTCAAGAAACAATCTCTCTGGTAATATTCCGAGTTCCATGGGTATCCCAAGTAATCTTGCTATATTGAAGATGAACAACAATAACTTTGGTGGGGAAATTCCTTCGTTGAAAAATTGCTCCAAGTTGAGTAGACTTAATCTCGGAGACAACAAGTTTTATGGAAACCTACCTTCATGGATAGGATCAAAGGTGACACTGCGTATACTACGATTGCGCACAAACTCTTTCAGTGGTCACATTCCCCATCACCCTGTGCAATCTTATTGGTCTCCATGTCCTGGACCTTGCTCAGAACAACTTTTCAGGTACCATTCCAAAGTGTTTGATAATATGACTTCCTTGGGTAGTGAAGAACCTGATGATTGGAAATTCTACGATTTTGCTGAGCAAATAACAATAATTTCAAAAGGAAGAGAACTCGAATACGGTTCTTCCACTGTAGATTTGGTGAAAAGTATTGATCTTTCCTCAAATAACTTGGAAGGTGAAATTCCTGATGAAATAACCAGTCTCATTGCACTGAGTACCTTGAACTTGTCGAGGAATCATTTACATGGAAATATTCCATCAAACATTGGAAACTTGAGTTCGCTGGAAACACTTGACCTCTCACACAATCACCTTTTTGGAGAAATTCCTCAAAGCTTGTCTTTTCTGAACTACTTGTCTCATTTGAACTTGTCTTATAACAACTTTTCTGGAAGAATTCCTTCGGGCAATCAGCTCCAAACGCTGGTCGATCCATTCATGTATGAGGGCAATCCATCATTGTGCGGCTTTCCACTCTCAACCAAGTGCCCTGGAGATGACGAACCTACTAGCACTGGAAATCTTCCTGTCCAAGACACTGATGATGAAGATGGCAATGAAAAGCTTGGTCTCTACATCAGCGCTGCGCTTGGATTTATCATAGGCTTCTGGGGTGTTTGTGGCACATTAGCTGTGAAGAAATCGTTGAGAGCTCTGTCTCTTCTTTTTGCTTATTATTTGTTCAAGCTATCATTGGCATCTTCCTCAGTACCACAGGAGGATGTTCCATATGAGGATGAAGGGATTATTGAAGCTTTGTCAGTTTGTTTTGAAAGCAATGCTGAGTTTACAGATCCTGATGATGGAATCAGTCTTGTTGGTGTCCTAATCGCTGACGAAGAACCTGTAGTTGGAGGAGTTAAGGCTGCCTTAATGGGTATCTGGAAAACTCTTGGTCAGATTAGGATCGTCGGAGTCAAGAAGAACACTTACAGCCTTAACGTTGGCTCGGAGAAACTTGCAAGAAAGCTGCTTGAGGAAAGTCCGTGGAATGTTAAAGGTATGTGCTTTACCATTCGGTACTGGCCCAGATATCATTCTATCGATGATATTGACACCCACAGAGTCACATACTGGATACAAGGCCACGGAGTACCTCTAGTACAGTTAAACAAGATCAATGGTCAAAATCTTGGTCAACTATTGGGCTCAGTGGTGGAGATAGAAGACCCAGGGATTGCTGGCAACCGTGGTTTTTTGAGGATGAGAGTGGATATTGATTCAAGAAGACCCTTAGCTACTTTCATCCAGCTTCCCAGGCCCAACTTAGCTCCAAAGAAGATATATCTTCAGTATGAACATCTAAAGAGTTTCTGCTATAATTGTGGCCGTCTGGGTCACATGATAGCTGCGTGCAGGTATCATGTCAATCCTATTTTGATCTCTTTGGGTGTTAAGTGTGATAACTCTCTGATTGCAGACCCCCCAGAAAAACCGGTTTTTACCCAAGCTCATTTATCTCCTAGAATTCCATATGCTCCATCTCCCGGAATTTTTGGTTGGAAAAAAATGAGCAACGGTATACCGGTATCTGGTTTTGCTGGTAATTCAAATCATGGGGACCCATTGGTGGCACACGATACTATGTCTGATGCTGATACAACTAAAGAGCTCTGCCATCTTGATGTCTCTGATCCCTCCTGTTCATTGAAAGACAAGTACCTCTCTCGTGTTCAGAATACACAGCCAAGAAAGCAAAAGAGTGGCCCTCCTCTATGGGACCCAGACTCACATGGGGTTCTTGTCAGAAATGGAAGCGTGTCACGAGCTCTTGGAGGATTGAACCTCCATGTTGGGCCATGGGCCGACCCGGAGTGCATACCACCGTGGGCTTTCCACAATAATGCCAACTCACTGTTTCCCACCCCATCCACTTTGAACTGCTGTGATGAAACTGGGGCAAAAAAGCCCAGTATTGCAACACTAGTTGAGATTGCTGTAGAGAGTCAAAGATTGATTTCCGAAGACAACCCTATCCCCTTGAAGAGAAAAAGAAAGCCGAATGTTCCTTTTGAGGAGAGCAGCAAGAAGACTATATTGCCTTGCTCGACACCCCGGAAGACCAACAATGGAGGAAGAGGTAGAGGGCGAGGGAAGAGGGGTTATGGTAGGGGTAGAGGTAAGATAGAGGCCCCAATAGCTGATGTGGTTCTGACGATTGGAACCACAGAGCAGAAAGATGTGTCTGAAGGTATGGAGGATTTCACCCACCTCCAGGGTTGTGGCAGCTGGCCGAATGCAGCTGCAAGGTCTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_3 zf-CCHC_4

Protein Analysis

888

Amino Acids

97.57

Weight (kDa)

6.38

Isoelectric Point (pI)

38.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 186 - 262 5.5e-07 Leucine-rich repeat region
zf-CCHC_4 PF14392 541 - 589 3.7e-08 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 783
Acc16I TGCGCA 1 cut(s) 311
Acc36I ACCTGC 1 cut(s) 1752
Acc65I GGTACC 1 cut(s) 402
AccB1I GGYRCC 1 cut(s) 402
AccB7I CCANNNNNTGG 2 cut(s) 374, 829
AccI GTMKAC 3 cut(s) 226, 298, 1927
AciI CCGC 1 cut(s) 870
AclI AACGTT 1 cut(s) 1347
AclWI GGATC 7 cut(s) 7, 20, 286, 830, 1193, 1319, 2033
AcoI YGGCCR 2 cut(s) 1732, 2636
AcsI RAATTY 7 cut(s) 192, 464, 585, 729, 801, 1872, 1896
AcuI CTGAAG 2 cut(s) 1679, 2613
AdeI CACNNNGTG 1 cut(s) 349
AfaI GTAC 7 cut(s) 404, 622, 1116, 1427, 1500, 1509, 2066
AfeI AGCGCT 1 cut(s) 988
AfiI CCNNNNNNNGG 8 cut(s) 374, 829, 1208, 1256, 1892, 1937, 1975, 2620
AgeI ACCGGT 2 cut(s) 1840, 1930
AhlI ACTAGT 1 cut(s) 2329
AjnI CCWGG 5 cut(s) 373, 895, 1576, 1661, 2619
AjuI GAANNNNNNNTTGG 4 cut(s) 1239, 1271, 1888, 1920
Alw21I GWGCWC 3 cut(s) 1060, 2019, 2176
Alw26I GTCTC 8 cut(s) 100, 234, 369, 611, 768, 980, 1068, 2038
AlwI GGATC 7 cut(s) 7, 20, 286, 830, 1193, 1319, 2033
AlwNI CAGNNNCTG 1 cut(s) 1202
Ama87I CYCGRG 1 cut(s) 54
Aor51HI AGCGCT 1 cut(s) 988
AoxI GGCC 9 cut(s) 1430, 1489, 1664, 1732, 2110, 2201, 2208, 2535, 2636
ApeKI GCWGC 8 cut(s) 989, 1271, 1375, 1754, 2427, 2631, 2645, 2648
ApoI RAATTY 7 cut(s) 192, 464, 585, 729, 801, 1872, 1896
ArsI GACNNNNNNTTYG 2 cut(s) 1525, 1557
AsiGI ACCGGT 2 cut(s) 1840, 1930
Asp700I GAANNNNTTC 1 cut(s) 805
Asp718I GGTACC 1 cut(s) 402
AspLEI GCGC 3 cut(s) 312, 989, 994
AspS9I GGNCC 9 cut(s) 377, 1431, 1665, 1966, 2111, 2125, 2201, 2208, 2536
AsuC2I CCSGG 3 cut(s) 1893, 2216, 2461
AsuHPI GGTGA 6 cut(s) 298, 335, 556, 593, 707, 2602
AvaI CYCGRG 1 cut(s) 54
AvaII GGWCC 3 cut(s) 377, 1966, 2125
BaeGI GKGCMC 1 cut(s) 896
BamHI GGATCC 1 cut(s) 12
BanI GGYRCC 1 cut(s) 402
BanII GRGCYC 4 cut(s) 1060, 1556, 2019, 2176
BarI GAAGNNNNNNTAC 2 cut(s) 1319, 1351
BauI CACGAG 2 cut(s) 2073, 2169
BbsI GAAGAC 5 cut(s) 1578, 1639, 2376, 2441, 2471
Bbv12I GWGCWC 3 cut(s) 1060, 2019, 2176
BbvI GCAGC 8 cut(s) 976, 1258, 1362, 1741, 2439, 2635, 2643, 2657
BccI CCATC 8 cut(s) 348, 670, 868, 950, 1202, 1894, 2031, 2281
BceAI ACGGC 1 cut(s) 1719
BciT130I CCWGG 5 cut(s) 375, 897, 1578, 1663, 2621
BciVI GTATCC 2 cut(s) 149, 1476
BcnI CCSGG 3 cut(s) 1893, 2216, 2461
BcoDI GTCTC 8 cut(s) 100, 234, 369, 611, 768, 980, 1068, 2038
BcuI ACTAGT 1 cut(s) 2329
BfaI CTAG 4 cut(s) 915, 1505, 1869, 2330
BfmI CTRYAG 3 cut(s) 534, 1251, 2343
BfoI RGCGCY 1 cut(s) 990
BfuAI ACCTGC 1 cut(s) 1752
BfuI GTATCC 2 cut(s) 149, 1476
BisI GCNGC 9 cut(s) 871, 990, 1272, 1376, 1755, 2428, 2632, 2646, 2649
BlpI GCTNAGC 1 cut(s) 480
BlsI GCNGC 9 cut(s) 872, 991, 1273, 1377, 1756, 2429, 2633, 2647, 2650
Bme1390I CCNGG 8 cut(s) 375, 897, 1578, 1663, 1893, 2216, 2461, 2621
Bme18I GGWCC 3 cut(s) 377, 1966, 2125
BmeT110I CYCGRG 1 cut(s) 54
BmgT120I GGNCC 9 cut(s) 377, 1431, 1665, 1966, 2111, 2125, 2201, 2208, 2536
BmiI GGNNCC 8 cut(s) 14, 404, 1967, 1968, 2126, 2127, 2538, 2569
BmrFI CCNGG 8 cut(s) 375, 897, 1578, 1663, 1893, 2216, 2461, 2621
BmrI ACTGGG 2 cut(s) 2310, 2310
BmsI GCATC 2 cut(s) 1112, 1987
BmuI ACTGGG 2 cut(s) 2310, 2310
BpiI GAAGAC 5 cut(s) 1578, 1639, 2376, 2441, 2471
BplI GAGNNNNNCTC 2 cut(s) 2098, 2130
BpmI CTGGAG 3 cut(s) 63, 918, 2603
Bpu10I CCTNAGC 1 cut(s) 1639
Bpu1102I GCTNAGC 1 cut(s) 480
BpuEI CTTGAG 3 cut(s) 82, 700, 1400
BpuMI CCSGG 3 cut(s) 1893, 2216, 2461
Bsa29I ATCGAT 2 cut(s) 81, 1449
BsaBI GATNNNNATC 1 cut(s) 1310
BsaI GGTCTC 2 cut(s) 369, 980
BsaWI WCCGGW 2 cut(s) 1840, 1930
Bsc4I CCNNNNNNNGG 8 cut(s) 374, 829, 1208, 1256, 1892, 1937, 1975, 2620
Bse118I RCCGGY 2 cut(s) 1840, 1930
Bse1I ACTGG 6 cut(s) 603, 925, 1433, 1484, 2305, 2316
Bse3DI GCAATG 3 cut(s) 609, 967, 1189
Bse8I GATNNNNATC 1 cut(s) 1310
BseBI CCWGG 5 cut(s) 375, 897, 1578, 1663, 2621
BseCI ATCGAT 2 cut(s) 81, 1449
BseGI GGATG 6 cut(s) 97, 1132, 1147, 1614, 1650, 2273
BseJI GATNNNNATC 1 cut(s) 1310
BseLI CCNNNNNNNGG 8 cut(s) 374, 829, 1208, 1256, 1892, 1937, 1975, 2620
BseMI GCAATG 3 cut(s) 609, 967, 1189
BseMII CTCAG 6 cut(s) 399, 471, 608, 1125, 1179, 1569
BseNI ACTGG 6 cut(s) 603, 925, 1433, 1484, 2305, 2316
BseRI GAGGAG 3 cut(s) 1275, 2106, 2435
BseSI GKGCMC 1 cut(s) 896
BseXI GCAGC 8 cut(s) 976, 1258, 1362, 1741, 2439, 2635, 2643, 2657
BsgI GTGCAG 1 cut(s) 1780
BshFI GGCC 9 cut(s) 1432, 1491, 1666, 1734, 2112, 2203, 2210, 2537, 2638
BshNI GGYRCC 1 cut(s) 402
BshTI ACCGGT 2 cut(s) 1840, 1930
BshVI ATCGAT 2 cut(s) 81, 1449
BsiHKAI GWGCWC 3 cut(s) 1060, 2019, 2176
BsiHKCI CYCGRG 1 cut(s) 54
BsiSI CCGG 5 cut(s) 1841, 1893, 1931, 2216, 2461
BslFI GGGAC 2 cut(s) 1979, 2138
BslI CCNNNNNNNGG 8 cut(s) 374, 829, 1208, 1256, 1892, 1937, 1975, 2620
BsmAI GTCTC 8 cut(s) 100, 234, 369, 611, 768, 980, 1068, 2038
BsmFI GGGAC 2 cut(s) 1979, 2138
BsmI GAATGC 1 cut(s) 2647
BsnI GGCC 9 cut(s) 1432, 1491, 1666, 1734, 2112, 2203, 2210, 2537, 2638
Bso31I GGTCTC 2 cut(s) 369, 980
BsoBI CYCGRG 1 cut(s) 54
Bsp1286I GDGCHC 5 cut(s) 896, 1060, 1556, 2019, 2176
Bsp143I GATC 9 cut(s) 12, 278, 556, 835, 1198, 1311, 1521, 1785, 2038
Bsp1720I GCTNAGC 1 cut(s) 480
Bsp19I CCATGG 2 cut(s) 132, 2204
BspACI CCGC 1 cut(s) 870
BspANI GGCC 9 cut(s) 1432, 1491, 1666, 1734, 2112, 2203, 2210, 2537, 2638
BspCNI CTCAG 6 cut(s) 398, 472, 609, 1124, 1180, 1568
BspDI ATCGAT 2 cut(s) 81, 1449
BspLI GGNNCC 8 cut(s) 14, 404, 1967, 1968, 2126, 2127, 2538, 2569
BspMI ACCTGC 1 cut(s) 1752
BspPI GGATC 7 cut(s) 7, 20, 286, 830, 1193, 1319, 2033
BspT107I GGYRCC 1 cut(s) 402
BspTNI GGTCTC 2 cut(s) 369, 980
BsrDI GCAATG 3 cut(s) 609, 967, 1189
BsrFI RCCGGY 2 cut(s) 1840, 1930
BsrI ACTGG 6 cut(s) 603, 925, 1433, 1484, 2305, 2316
BssAI RCCGGY 2 cut(s) 1840, 1930
BssMI GATC 9 cut(s) 12, 278, 556, 835, 1198, 1311, 1521, 1785, 2038
BssNAI GTATAC 2 cut(s) 299, 1928
BssSI CACGAG 2 cut(s) 2073, 2169
BssT1I CCWWGG 3 cut(s) 132, 435, 2204
Bst1107I GTATAC 2 cut(s) 299, 1928
Bst2BI CACGAG 2 cut(s) 2073, 2169
Bst2UI CCWGG 5 cut(s) 375, 897, 1578, 1663, 2621
Bst4CI ACNGT 7 cut(s) 524, 535, 1512, 1595, 1925, 2232, 2262
Bst6I CTCTTC 5 cut(s) 502, 1071, 2384, 2476, 2495
BstC8I GCNNGC 3 cut(s) 1588, 1759, 2636
BstDEI CTNAG 9 cut(s) 23, 385, 480, 617, 1111, 1188, 1555, 1639, 1672
BstDSI CCRYGG 6 cut(s) 132, 1391, 1492, 1594, 2204, 2231
BstF5I GGATG 6 cut(s) 97, 1132, 1147, 1614, 1650, 2273
BstH2I RGCGCY 1 cut(s) 990
BstHHI GCGC 3 cut(s) 312, 989, 994
BstKTI GATC 9 cut(s) 15, 281, 559, 838, 1201, 1314, 1524, 1788, 2041
BstMAI GTCTC 8 cut(s) 100, 234, 369, 611, 768, 980, 1068, 2038
BstMBI GATC 9 cut(s) 12, 278, 556, 835, 1198, 1311, 1521, 1785, 2038
BstMWI GCNNNNNNNGC 4 cut(s) 826, 1663, 2098, 2543
BstNI CCWGG 5 cut(s) 375, 897, 1578, 1663, 2621
BstSCI CCNGG 8 cut(s) 373, 895, 1576, 1661, 1891, 2214, 2459, 2619
BstSFI CTRYAG 3 cut(s) 534, 1251, 2343
BstSLI GKGCMC 1 cut(s) 896
BstV1I GCAGC 8 cut(s) 976, 1258, 1362, 1741, 2439, 2635, 2643, 2657
BstV2I GAAGAC 5 cut(s) 1578, 1639, 2376, 2441, 2471
BstX2I RGATCY 2 cut(s) 12, 1198
BstXI CCANNNNNNTGG 1 cut(s) 2627
BstYI RGATCY 2 cut(s) 12, 1198
BstZ17I GTATAC 2 cut(s) 299, 1928
Bsu15I ATCGAT 2 cut(s) 81, 1449
BsuI GTATCC 2 cut(s) 149, 1476
BsuRI GGCC 9 cut(s) 1432, 1491, 1666, 1734, 2112, 2203, 2210, 2537, 2638
BsuTUI ATCGAT 2 cut(s) 81, 1449
BtgI CCRYGG 6 cut(s) 132, 1391, 1492, 1594, 2204, 2231
BtsCI GGATG 6 cut(s) 97, 1132, 1147, 1614, 1650, 2273
BtsI GCAGTG 1 cut(s) 290
BtsIMutI CAGTG 8 cut(s) 290, 331, 531, 614, 918, 942, 1563, 2258
BveI ACCTGC 1 cut(s) 1752
Cac8I GCNNGC 3 cut(s) 1588, 1759, 2636
CaiI CAGNNNCTG 1 cut(s) 1202
CfoI GCGC 3 cut(s) 312, 989, 994
Cfr10I RCCGGY 2 cut(s) 1840, 1930
Cfr13I GGNCC 9 cut(s) 377, 1431, 1665, 1966, 2111, 2125, 2201, 2208, 2536
ClaI ATCGAT 2 cut(s) 81, 1449
Csp6I GTAC 7 cut(s) 403, 621, 1115, 1426, 1499, 1508, 2065
CspAI ACCGGT 2 cut(s) 1840, 1930
CviQI GTAC 7 cut(s) 403, 621, 1115, 1426, 1499, 1508, 2065
DdeI CTNAG 9 cut(s) 23, 385, 480, 617, 1111, 1188, 1555, 1639, 1672
DpnI GATC 9 cut(s) 14, 280, 558, 837, 1200, 1313, 1523, 1787, 2040
DpnII GATC 9 cut(s) 12, 278, 556, 835, 1198, 1311, 1521, 1785, 2038
DraIII CACNNNGTG 1 cut(s) 349
EaeI YGGCCR 2 cut(s) 1732, 2636
Eam1104I CTCTTC 5 cut(s) 502, 1071, 2384, 2476, 2495
EarI CTCTTC 5 cut(s) 502, 1071, 2384, 2476, 2495
Ecl136II GAGCTC 3 cut(s) 1058, 2017, 2174
Eco130I CCWWGG 3 cut(s) 132, 435, 2204
Eco24I GRGCYC 4 cut(s) 1060, 1556, 2019, 2176
Eco31I GGTCTC 2 cut(s) 369, 980
Eco32I GATATC 1 cut(s) 1439
Eco47I GGWCC 3 cut(s) 377, 1966, 2125
Eco47III AGCGCT 1 cut(s) 988
Eco53kI GAGCTC 3 cut(s) 1058, 2017, 2174
Eco57I CTGAAG 2 cut(s) 1679, 2613
Eco88I CYCGRG 1 cut(s) 54
EcoICRI GAGCTC 3 cut(s) 1058, 2017, 2174
EcoO109I RGGNCCY 3 cut(s) 1966, 2125, 2536
EcoRI GAATTC 2 cut(s) 801, 1872
EcoRII CCWGG 5 cut(s) 373, 895, 1576, 1661, 2619
EcoRV GATATC 1 cut(s) 1439
EcoT14I CCWWGG 3 cut(s) 132, 435, 2204
EcoT38I GRGCYC 4 cut(s) 1060, 1556, 2019, 2176
ErhI CCWWGG 3 cut(s) 132, 435, 2204
FalI AAGNNNNNCTT 6 cut(s) 730, 762, 790, 822, 1259, 1291
FaqI GGGAC 2 cut(s) 1979, 2138
FauNDI CATATG 2 cut(s) 1135, 1879
FblI GTMKAC 3 cut(s) 226, 298, 1927
Fnu4HI GCNGC 9 cut(s) 871, 990, 1272, 1376, 1755, 2428, 2632, 2646, 2649
FokI GGATG 6 cut(s) 104, 1139, 1154, 1621, 1637, 2260
FriOI GRGCYC 4 cut(s) 1060, 1556, 2019, 2176
Fsp4HI GCNGC 9 cut(s) 871, 990, 1272, 1376, 1755, 2428, 2632, 2646, 2649
FspBI CTAG 4 cut(s) 915, 1505, 1869, 2330
FspI TGCGCA 1 cut(s) 311
GlaI GCGC 3 cut(s) 311, 988, 993
GluI GCNGC 9 cut(s) 871, 990, 1272, 1376, 1755, 2428, 2632, 2646, 2649
GsuI CTGGAG 3 cut(s) 63, 918, 2603
HaeII RGCGCY 1 cut(s) 990
HaeIII GGCC 9 cut(s) 1432, 1491, 1666, 1734, 2112, 2203, 2210, 2537, 2638
HapII CCGG 5 cut(s) 1841, 1893, 1931, 2216, 2461
HhaI GCGC 3 cut(s) 312, 989, 994
Hin6I GCGC 3 cut(s) 310, 987, 992
HinP1I GCGC 3 cut(s) 310, 987, 992
HincII GTYRAC 1 cut(s) 1544
HindII GTYRAC 1 cut(s) 1544
HindIII AAGCTT 3 cut(s) 739, 968, 1158
HinfI GANTC 7 cut(s) 640, 1212, 1320, 1470, 1625, 2132, 2350
HpaII CCGG 5 cut(s) 1841, 1893, 1931, 2216, 2461
HphI GGTGA 6 cut(s) 298, 335, 556, 593, 707, 2602
Hpy166II GTNNAC 5 cut(s) 227, 299, 1194, 1544, 1928
Hpy8I GTNNAC 5 cut(s) 227, 299, 1194, 1544, 1928
Hpy99I CGWCG 1 cut(s) 1319
HpyAV CCTTC 6 cut(s) 207, 276, 572, 816, 1139, 2588
HpyCH4III ACNGT 7 cut(s) 524, 535, 1512, 1595, 1925, 2232, 2262
HpyCH4IV ACGT 1 cut(s) 1347
HpyCH4V TGCA 9 cut(s) 352, 614, 1367, 1761, 1823, 2223, 2324, 2645, 2651
HpyF10VI GCNNNNNNNGC 4 cut(s) 826, 1663, 2098, 2543
HpyF3I CTNAG 9 cut(s) 23, 385, 480, 617, 1111, 1188, 1555, 1639, 1672
HpySE526I ACGT 1 cut(s) 1347
HspAI GCGC 3 cut(s) 310, 987, 992
KflI GGGWCCC 2 cut(s) 1966, 2125
KpnI GGTACC 1 cut(s) 406
Kzo9I GATC 9 cut(s) 12, 278, 556, 835, 1198, 1311, 1521, 1785, 2038
LmnI GCTCC 5 cut(s) 72, 218, 825, 1681, 1888
Lsp1109I GCAGC 8 cut(s) 976, 1258, 1362, 1741, 2439, 2635, 2643, 2657
LweI GCATC 2 cut(s) 1112, 1987
MaeI CTAG 4 cut(s) 915, 1505, 1869, 2330
MaeII ACGT 1 cut(s) 1347
MaeIII GTNAC 6 cut(s) 26, 286, 329, 1471, 1742, 2166
MalI GATC 9 cut(s) 14, 280, 558, 837, 1200, 1313, 1523, 1787, 2040
MboI GATC 9 cut(s) 12, 278, 556, 835, 1198, 1311, 1521, 1785, 2038
MflI RGATCY 2 cut(s) 12, 1198
MhlI GDGCHC 5 cut(s) 896, 1060, 1556, 2019, 2176
MlyI GAGTC 4 cut(s) 1329, 1479, 2126, 2359
MmeI TCCRAC 3 cut(s) 1237, 1297, 1886
MroXI GAANNNNTTC 1 cut(s) 805
MseI TTAA 7 cut(s) 231, 1266, 1277, 1344, 1401, 1514, 1800
MslI CAYNNNNRTG 4 cut(s) 648, 865, 2028, 2247
MspA1I CMGCKG 2 cut(s) 2634, 2648
MspI CCGG 5 cut(s) 1841, 1893, 1931, 2216, 2461
MspR9I CCNGG 8 cut(s) 375, 897, 1578, 1663, 1893, 2216, 2461, 2621
MteI GCGCNGCGC 1 cut(s) 990
Mva1269I GAATGC 1 cut(s) 2647
MvaI CCWGG 5 cut(s) 375, 897, 1578, 1663, 2621
MwoI GCNNNNNNNGC 4 cut(s) 826, 1663, 2098, 2543
NciI CCSGG 3 cut(s) 1893, 2216, 2461
NcoI CCATGG 2 cut(s) 132, 2204
NdeI CATATG 2 cut(s) 1135, 1879
NdeII GATC 9 cut(s) 12, 278, 556, 835, 1198, 1311, 1521, 1785, 2038
NlaIV GGNNCC 8 cut(s) 14, 404, 1967, 1968, 2126, 2127, 2538, 2569
NmuCI GTSAC 5 cut(s) 286, 329, 1471, 1742, 2166
NsbI TGCGCA 1 cut(s) 311
PaeR7I CTCGAG 1 cut(s) 54
PasI CCCWGGG 1 cut(s) 1577
PctI GAATGC 1 cut(s) 2647
PdmI GAANNNNTTC 1 cut(s) 805
PfeI GAWTC 3 cut(s) 640, 1212, 1625
PflMI CCANNNNNTGG 2 cut(s) 374, 829
PfoI TCCNGGA 2 cut(s) 373, 1891
PinAI ACCGGT 2 cut(s) 1840, 1930
PkrI GCNGC 9 cut(s) 872, 991, 1273, 1377, 1756, 2429, 2633, 2647, 2650
PleI GAGTC 4 cut(s) 1328, 1478, 2126, 2358
PpsI GAGTC 4 cut(s) 1328, 1478, 2126, 2358
PpuMI RGGWCCY 2 cut(s) 1966, 2125
PsiI TTATAA 1 cut(s) 783
Psp124BI GAGCTC 3 cut(s) 1060, 2019, 2176
Psp1406I AACGTT 1 cut(s) 1347
Psp5II RGGWCCY 2 cut(s) 1966, 2125
Psp6I CCWGG 5 cut(s) 373, 895, 1576, 1661, 2619
PspGI CCWGG 5 cut(s) 373, 895, 1576, 1661, 2619
PspN4I GGNNCC 8 cut(s) 14, 404, 1967, 1968, 2126, 2127, 2538, 2569
PspPI GGNCC 9 cut(s) 377, 1431, 1665, 1966, 2111, 2125, 2201, 2208, 2536
PspPPI RGGWCCY 2 cut(s) 1966, 2125
PspXI VCTCGAGB 1 cut(s) 54
PstNI CAGNNNCTG 1 cut(s) 1202
PsuI RGATCY 2 cut(s) 12, 1198
PvuII CAGCTG 2 cut(s) 2634, 2648
RsaI GTAC 7 cut(s) 404, 622, 1116, 1427, 1500, 1509, 2066
RsaNI GTAC 7 cut(s) 403, 621, 1115, 1426, 1499, 1508, 2065
RseI CAYNNNNRTG 4 cut(s) 648, 865, 2028, 2247
SacI GAGCTC 3 cut(s) 1060, 2019, 2176
SaqAI TTAA 7 cut(s) 231, 1266, 1277, 1344, 1401, 1514, 1800
SatI GCNGC 9 cut(s) 871, 990, 1272, 1376, 1755, 2428, 2632, 2646, 2649
Sau3AI GATC 9 cut(s) 12, 278, 556, 835, 1198, 1311, 1521, 1785, 2038
Sau96I GGNCC 9 cut(s) 377, 1431, 1665, 1966, 2111, 2125, 2201, 2208, 2536
SchI GAGTC 4 cut(s) 1329, 1479, 2126, 2359
ScrFI CCNGG 8 cut(s) 375, 897, 1578, 1663, 1893, 2216, 2461, 2621
SduI GDGCHC 5 cut(s) 896, 1060, 1556, 2019, 2176
SfaNI GCATC 2 cut(s) 1112, 1987
SfcI CTRYAG 3 cut(s) 534, 1251, 2343
Sfr274I CTCGAG 1 cut(s) 54
SinI GGWCC 3 cut(s) 377, 1966, 2125
SlaI CTCGAG 1 cut(s) 54
SmiMI CAYNNNNRTG 4 cut(s) 648, 865, 2028, 2247
SmlI CTYRAG 4 cut(s) 54, 97, 679, 1379
SmoI CTYRAG 4 cut(s) 54, 97, 679, 1379
SpeI ACTAGT 1 cut(s) 2329
SsiI CCGC 1 cut(s) 870
SspI AATATT 2 cut(s) 121, 658
SspMI CTAG 4 cut(s) 915, 1505, 1869, 2330
SstI GAGCTC 3 cut(s) 1060, 2019, 2176
StyD4I CCNGG 8 cut(s) 373, 895, 1576, 1661, 1891, 2214, 2459, 2619
StyI CCWWGG 3 cut(s) 132, 435, 2204
TaaI ACNGT 7 cut(s) 524, 535, 1512, 1595, 1925, 2232, 2262
TaiI ACGT 1 cut(s) 1350
TaqI TCGA 7 cut(s) 55, 81, 516, 635, 834, 1449, 2453
TatI WGTACW 1 cut(s) 1507
TauI GCSGC 1 cut(s) 873
TfiI GAWTC 3 cut(s) 640, 1212, 1625
Tru1I TTAA 7 cut(s) 231, 1266, 1277, 1344, 1401, 1514, 1800
Tru9I TTAA 7 cut(s) 231, 1266, 1277, 1344, 1401, 1514, 1800
TscAI CASTG 8 cut(s) 297, 331, 538, 621, 925, 949, 1563, 2265
TseFI GTSAC 5 cut(s) 286, 329, 1471, 1742, 2166
TseI GCWGC 8 cut(s) 989, 1271, 1375, 1754, 2427, 2631, 2645, 2648
Tsp45I GTSAC 5 cut(s) 286, 329, 1471, 1742, 2166
TspGWI ACGGA 2 cut(s) 1380, 1509
TspRI CASTG 8 cut(s) 297, 331, 538, 621, 925, 949, 1563, 2265
Van91I CCANNNNNTGG 2 cut(s) 374, 829
VpaK11BI GGWCC 3 cut(s) 377, 1966, 2125
XapI RAATTY 7 cut(s) 192, 464, 585, 729, 801, 1872, 1896
XcmI CCANNNNNNNNNTGG 1 cut(s) 538
XhoI CTCGAG 1 cut(s) 54
XmiI GTMKAC 3 cut(s) 226, 298, 1927
XmnI GAANNNNTTC 1 cut(s) 805
XspI CTAG 4 cut(s) 915, 1505, 1869, 2330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.