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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 644 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 224 |
| AciI | CCGC | 1 cut(s) | 119 |
| AclWI | GGATC | 7 cut(s) | 93, 110, 244, 387, 451, 620, 645 |
| AcsI | RAATTY | 1 cut(s) | 352 |
| AcuI | CTGAAG | 3 cut(s) | 101, 336, 606 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 142, 210, 224, 466, 654 |
| AflII | CTTAAG | 1 cut(s) | 35 |
| AgeI | ACCGGT | 1 cut(s) | 647 |
| AgsI | TTSAA | 4 cut(s) | 335, 363, 409, 443 |
| AjnI | CCWGG | 2 cut(s) | 553, 631 |
| AluBI | AGCT | 3 cut(s) | 396, 432, 533 |
| AluI | AGCT | 3 cut(s) | 396, 432, 533 |
| Alw26I | GTCTC | 4 cut(s) | 279, 374, 501, 590 |
| AlwI | GGATC | 7 cut(s) | 93, 110, 244, 387, 451, 620, 645 |
| AoxI | GGCC | 4 cut(s) | 31, 132, 656, 673 |
| ApaI | GGGCCC | 1 cut(s) | 677 |
| ApeKI | GCWGC | 1 cut(s) | 665 |
| ApoI | RAATTY | 1 cut(s) | 352 |
| AsiGI | ACCGGT | 1 cut(s) | 647 |
| AspLEI | GCGC | 2 cut(s) | 42, 544 |
| AspS9I | GGNCC | 5 cut(s) | 22, 133, 469, 673, 674 |
| AvaII | GGWCC | 2 cut(s) | 22, 469 |
| BaeGI | GKGCMC | 1 cut(s) | 677 |
| BanI | GGYRCC | 1 cut(s) | 644 |
| BanII | GRGCYC | 1 cut(s) | 677 |
| BbsI | GAAGAC | 1 cut(s) | 57 |
| BbvI | GCAGC | 1 cut(s) | 677 |
| BccI | CCATC | 1 cut(s) | 226 |
| BciT130I | CCWGG | 2 cut(s) | 555, 633 |
| BciVI | GTATCC | 1 cut(s) | 277 |
| BcoDI | GTCTC | 4 cut(s) | 279, 374, 501, 590 |
| BfaI | CTAG | 1 cut(s) | 530 |
| BfoI | RGCGCY | 1 cut(s) | 545 |
| BfrI | CTTAAG | 1 cut(s) | 35 |
| BfuI | GTATCC | 1 cut(s) | 277 |
| BisI | GCNGC | 1 cut(s) | 666 |
| BlsI | GCNGC | 1 cut(s) | 667 |
| Bme1390I | CCNGG | 2 cut(s) | 555, 633 |
| Bme18I | GGWCC | 2 cut(s) | 22, 469 |
| BmgT120I | GGNCC | 5 cut(s) | 22, 133, 469, 673, 674 |
| BmiI | GGNNCC | 3 cut(s) | 135, 646, 675 |
| BmrFI | CCNGG | 2 cut(s) | 555, 633 |
| BmsI | GCATC | 1 cut(s) | 652 |
| BpiI | GAAGAC | 1 cut(s) | 57 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 271, 303 |
| BsaBI | GATNNNNATC | 1 cut(s) | 103 |
| BsaI | GGTCTC | 1 cut(s) | 374 |
| BsaJI | CCNNGG | 4 cut(s) | 223, 554, 632, 669 |
| BsaWI | WCCGGW | 1 cut(s) | 647 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 409, 439 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 142, 210, 224, 466, 654 |
| Bse118I | RCCGGY | 2 cut(s) | 544, 647 |
| Bse1I | ACTGG | 2 cut(s) | 25, 370 |
| Bse3DI | GCAATG | 1 cut(s) | 42 |
| Bse8I | GATNNNNATC | 1 cut(s) | 103 |
| BseBI | CCWGG | 2 cut(s) | 555, 633 |
| BseDI | CCNNGG | 4 cut(s) | 223, 554, 632, 669 |
| BseGI | GGATG | 1 cut(s) | 218 |
| BseJI | GATNNNNATC | 1 cut(s) | 103 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 142, 210, 224, 466, 654 |
| BseMI | GCAATG | 1 cut(s) | 42 |
| BseMII | CTCAG | 3 cut(s) | 290, 307, 479 |
| BseNI | ACTGG | 2 cut(s) | 25, 370 |
| BseSI | GKGCMC | 1 cut(s) | 677 |
| BseXI | GCAGC | 1 cut(s) | 677 |
| BsgI | GTGCAG | 1 cut(s) | 243 |
| BshFI | GGCC | 4 cut(s) | 33, 134, 658, 675 |
| BshNI | GGYRCC | 1 cut(s) | 644 |
| BshTI | ACCGGT | 1 cut(s) | 647 |
| BsiSI | CCGG | 2 cut(s) | 545, 648 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 142, 210, 224, 466, 654 |
| BsmAI | GTCTC | 4 cut(s) | 279, 374, 501, 590 |
| BsmBI | CGTCTC | 1 cut(s) | 279 |
| BsnI | GGCC | 4 cut(s) | 33, 134, 658, 675 |
| Bso31I | GGTCTC | 1 cut(s) | 374 |
| Bsp120I | GGGCCC | 1 cut(s) | 673 |
| Bsp1286I | GDGCHC | 1 cut(s) | 677 |
| Bsp143I | GATC | 9 cut(s) | 70, 93, 98, 115, 249, 379, 456, 625, 637 |
| BspACI | CCGC | 1 cut(s) | 119 |
| BspANI | GGCC | 4 cut(s) | 33, 134, 658, 675 |
| BspCNI | CTCAG | 3 cut(s) | 289, 306, 478 |
| BspHI | TCATGA | 1 cut(s) | 680 |
| BspLI | GGNNCC | 3 cut(s) | 135, 646, 675 |
| BspPI | GGATC | 7 cut(s) | 93, 110, 244, 387, 451, 620, 645 |
| BspT107I | GGYRCC | 1 cut(s) | 644 |
| BspTI | CTTAAG | 1 cut(s) | 35 |
| BspTNI | GGTCTC | 1 cut(s) | 374 |
| BsrDI | GCAATG | 1 cut(s) | 42 |
| BsrFI | RCCGGY | 2 cut(s) | 544, 647 |
| BsrI | ACTGG | 2 cut(s) | 25, 370 |
| BssAI | RCCGGY | 2 cut(s) | 544, 647 |
| BssECI | CCNNGG | 4 cut(s) | 223, 554, 632, 669 |
| BssMI | GATC | 9 cut(s) | 70, 93, 98, 115, 249, 379, 456, 625, 637 |
| Bst2UI | CCWGG | 2 cut(s) | 555, 633 |
| Bst6I | CTCTTC | 1 cut(s) | 294 |
| BstAFI | CTTAAG | 1 cut(s) | 35 |
| BstC8I | GCNNGC | 2 cut(s) | 175, 656 |
| BstDEI | CTNAG | 3 cut(s) | 276, 293, 465 |
| BstDSI | CCRYGG | 2 cut(s) | 223, 669 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 208 |
| BstF5I | GGATG | 1 cut(s) | 218 |
| BstH2I | RGCGCY | 1 cut(s) | 545 |
| BstHHI | GCGC | 2 cut(s) | 42, 544 |
| BstKTI | GATC | 9 cut(s) | 73, 96, 101, 118, 252, 382, 459, 628, 640 |
| BstMAI | GTCTC | 4 cut(s) | 279, 374, 501, 590 |
| BstMBI | GATC | 9 cut(s) | 70, 93, 98, 115, 249, 379, 456, 625, 637 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 39, 539, 651 |
| BstNI | CCWGG | 2 cut(s) | 555, 633 |
| BstSCI | CCNGG | 2 cut(s) | 553, 631 |
| BstSLI | GKGCMC | 1 cut(s) | 677 |
| BstV1I | GCAGC | 1 cut(s) | 677 |
| BstV2I | GAAGAC | 1 cut(s) | 57 |
| BstX2I | RGATCY | 2 cut(s) | 98, 379 |
| BstYI | RGATCY | 2 cut(s) | 98, 379 |
| BsuI | GTATCC | 1 cut(s) | 277 |
| BsuRI | GGCC | 4 cut(s) | 33, 134, 658, 675 |
| BtgI | CCRYGG | 2 cut(s) | 223, 669 |
| BtsCI | GGATG | 1 cut(s) | 218 |
| BtsIMutI | CAGTG | 1 cut(s) | 582 |
| Cac8I | GCNNGC | 2 cut(s) | 175, 656 |
| CciI | TCATGA | 1 cut(s) | 680 |
| CfoI | GCGC | 2 cut(s) | 42, 544 |
| Cfr10I | RCCGGY | 2 cut(s) | 544, 647 |
| Cfr13I | GGNCC | 5 cut(s) | 22, 133, 469, 673, 674 |
| CspAI | ACCGGT | 1 cut(s) | 647 |
| CviAII | CATG | 1 cut(s) | 681 |
| DdeI | CTNAG | 3 cut(s) | 276, 293, 465 |
| DpnI | GATC | 9 cut(s) | 72, 95, 100, 117, 251, 381, 458, 627, 639 |
| DpnII | GATC | 9 cut(s) | 70, 93, 98, 115, 249, 379, 456, 625, 637 |
| Eam1104I | CTCTTC | 1 cut(s) | 294 |
| EarI | CTCTTC | 1 cut(s) | 294 |
| Eco147I | AGGCCT | 2 cut(s) | 33, 658 |
| Eco24I | GRGCYC | 1 cut(s) | 677 |
| Eco31I | GGTCTC | 1 cut(s) | 374 |
| Eco47I | GGWCC | 2 cut(s) | 22, 469 |
| Eco57I | CTGAAG | 3 cut(s) | 101, 336, 606 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 208 |
| EcoRII | CCWGG | 2 cut(s) | 553, 631 |
| EcoT38I | GRGCYC | 1 cut(s) | 677 |
| Esp3I | CGTCTC | 1 cut(s) | 279 |
| FaeI | CATG | 1 cut(s) | 684 |
| FaiI | YATR | 4 cut(s) | 104, 188, 201, 682 |
| FatI | CATG | 1 cut(s) | 680 |
| Fnu4HI | GCNGC | 1 cut(s) | 666 |
| FokI | GGATG | 1 cut(s) | 205 |
| FriOI | GRGCYC | 1 cut(s) | 677 |
| Fsp4HI | GCNGC | 1 cut(s) | 666 |
| FspBI | CTAG | 1 cut(s) | 530 |
| GlaI | GCGC | 2 cut(s) | 41, 543 |
| GluI | GCNGC | 1 cut(s) | 666 |
| HaeII | RGCGCY | 1 cut(s) | 545 |
| HaeIII | GGCC | 4 cut(s) | 33, 134, 658, 675 |
| HapII | CCGG | 2 cut(s) | 545, 648 |
| HhaI | GCGC | 2 cut(s) | 42, 544 |
| Hin1II | CATG | 1 cut(s) | 684 |
| Hin6I | GCGC | 2 cut(s) | 40, 542 |
| HinP1I | GCGC | 2 cut(s) | 40, 542 |
| HinfI | GANTC | 2 cut(s) | 214, 509 |
| HpaII | CCGG | 2 cut(s) | 545, 648 |
| Hpy188I | TCNGA | 9 cut(s) | 75, 98, 145, 208, 243, 279, 316, 456, 625 |
| Hpy188III | TCNNGA | 6 cut(s) | 68, 113, 440, 472, 489, 681 |
| Hpy99I | CGWCG | 1 cut(s) | 243 |
| HpyAV | CCTTC | 6 cut(s) | 25, 69, 264, 311, 437, 495 |
| HpyCH4V | TGCA | 5 cut(s) | 260, 329, 347, 499, 665 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 39, 539, 651 |
| HpyF3I | CTNAG | 3 cut(s) | 276, 293, 465 |
| Hsp92II | CATG | 1 cut(s) | 684 |
| HspAI | GCGC | 2 cut(s) | 40, 542 |
| Kzo9I | GATC | 9 cut(s) | 70, 93, 98, 115, 249, 379, 456, 625, 637 |
| LmnI | GCTCC | 1 cut(s) | 70 |
| Lsp1109I | GCAGC | 1 cut(s) | 677 |
| LweI | GCATC | 1 cut(s) | 652 |
| MaeI | CTAG | 1 cut(s) | 530 |
| MalI | GATC | 9 cut(s) | 72, 95, 100, 117, 251, 381, 458, 627, 639 |
| MboI | GATC | 9 cut(s) | 70, 93, 98, 115, 249, 379, 456, 625, 637 |
| MboII | GAAGA | 5 cut(s) | 62, 94, 281, 599, 602 |
| MflI | RGATCY | 2 cut(s) | 98, 379 |
| MhlI | GDGCHC | 1 cut(s) | 677 |
| MluCI | AATT | 2 cut(s) | 339, 352 |
| MlyI | GAGTC | 2 cut(s) | 208, 503 |
| MmeI | TCCRAC | 1 cut(s) | 221 |
| MnlI | CCTC | 7 cut(s) | 118, 214, 273, 435, 462, 621, 639 |
| MseI | TTAA | 1 cut(s) | 36 |
| MspCI | CTTAAG | 1 cut(s) | 35 |
| MspI | CCGG | 2 cut(s) | 545, 648 |
| MspR9I | CCNGG | 2 cut(s) | 555, 633 |
| MvaI | CCWGG | 2 cut(s) | 555, 633 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 39, 539, 651 |
| NdeII | GATC | 9 cut(s) | 70, 93, 98, 115, 249, 379, 456, 625, 637 |
| NlaIII | CATG | 1 cut(s) | 684 |
| NlaIV | GGNNCC | 3 cut(s) | 135, 646, 675 |
| PagI | TCATGA | 1 cut(s) | 680 |
| PceI | AGGCCT | 2 cut(s) | 33, 658 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 235 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 224 |
| PinAI | ACCGGT | 1 cut(s) | 647 |
| PkrI | GCNGC | 1 cut(s) | 667 |
| PleI | GAGTC | 2 cut(s) | 208, 503 |
| PpsI | GAGTC | 2 cut(s) | 208, 503 |
| Psp6I | CCWGG | 2 cut(s) | 553, 631 |
| PspGI | CCWGG | 2 cut(s) | 553, 631 |
| PspN4I | GGNNCC | 3 cut(s) | 135, 646, 675 |
| PspOMI | GGGCCC | 1 cut(s) | 673 |
| PspPI | GGNCC | 5 cut(s) | 22, 133, 469, 673, 674 |
| PsuI | RGATCY | 2 cut(s) | 98, 379 |
| SaqAI | TTAA | 1 cut(s) | 36 |
| SatI | GCNGC | 1 cut(s) | 666 |
| Sau3AI | GATC | 9 cut(s) | 70, 93, 98, 115, 249, 379, 456, 625, 637 |
| Sau96I | GGNCC | 5 cut(s) | 22, 133, 469, 673, 674 |
| SchI | GAGTC | 2 cut(s) | 208, 503 |
| ScrFI | CCNGG | 2 cut(s) | 555, 633 |
| SduI | GDGCHC | 1 cut(s) | 677 |
| SetI | ASST | 8 cut(s) | 200, 322, 398, 427, 434, 454, 471, 535 |
| SfaNI | GCATC | 1 cut(s) | 652 |
| SgrAI | CRCCGGYG | 1 cut(s) | 647 |
| SinI | GGWCC | 2 cut(s) | 22, 469 |
| SmlI | CTYRAG | 1 cut(s) | 35 |
| SmoI | CTYRAG | 1 cut(s) | 35 |
| Sse9I | AATT | 2 cut(s) | 339, 352 |
| SseBI | AGGCCT | 2 cut(s) | 33, 658 |
| SsiI | CCGC | 1 cut(s) | 119 |
| SspMI | CTAG | 1 cut(s) | 530 |
| StuI | AGGCCT | 2 cut(s) | 33, 658 |
| StyD4I | CCNGG | 2 cut(s) | 553, 631 |
| TaqI | TCGA | 1 cut(s) | 392 |
| TasI | AATT | 2 cut(s) | 339, 352 |
| Tru1I | TTAA | 1 cut(s) | 36 |
| Tru9I | TTAA | 1 cut(s) | 36 |
| TscAI | CASTG | 1 cut(s) | 589 |
| TseI | GCWGC | 1 cut(s) | 665 |
| TspGWI | ACGGA | 1 cut(s) | 519 |
| TspRI | CASTG | 1 cut(s) | 589 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 224 |
| Vha464I | CTTAAG | 1 cut(s) | 35 |
| VpaK11BI | GGWCC | 2 cut(s) | 22, 469 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 208 |
| XapI | RAATTY | 1 cut(s) | 352 |
| XspI | CTAG | 1 cut(s) | 530 |