Rh6BG227100

Domain of unknown function (DUF4283)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Reverse (-)
42873099 .. 42873660
562 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG227100.1

Sequence Viewer

Length: 468 bp
ATGCTTTCTGATGAAAACATCAACCCTGATGATCATGTGATCGATCTAAACCAACCTGATCCTCAAGCTCAACCACCTCTCACCCTTTTAGGCTTCCTTATAGCTGATAAATTTCTCAACACTGCTGCTGTCATTCGGATCCTCACTCGAGCGTGGTCTGATTTTGGTGAGGTCCATATAGAAGCTATACGTGATAACCGTACTTTCACCATAACACCCATTGAGGCTGAGACTGGCCAATTGATCCTTGACAGAGGACCCTGGTCTGTTATGGGTCACACCATGAGCATCAACACTTGGCCCTTGGAGGCAAGACTTGAGGATGTTCCTGTTCATTCTCTGGCTATTTGGATTCAGACCCACGGACTTCCTCGGGGGCAGATGACTCGATCCAATGCCAATCTCCTTGGTGCAGTCGCTGGCTCGGGGTTTGGATCAGGTGTGGAGCCAATAATCCCACTTGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

155

Amino Acids

16.94

Weight (kDa)

4.76

Isoelectric Point (pI)

30.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 28 - 103 5.7e-07 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 6 cut(s) 53, 133, 146, 238, 384, 442
AcoI YGGCCR 1 cut(s) 235
AcsI RAATTY 1 cut(s) 110
AfaI GTAC 1 cut(s) 202
AjnI CCWGG 1 cut(s) 260
AluBI AGCT 3 cut(s) 68, 104, 185
AluI AGCT 3 cut(s) 68, 104, 185
Alw26I GTCTC 1 cut(s) 224
AlwI GGATC 6 cut(s) 53, 133, 146, 238, 384, 442
AlwNI CAGNNNCTG 1 cut(s) 419
Ama87I CYCGRG 3 cut(s) 147, 372, 424
AoxI GGCC 2 cut(s) 235, 299
ApeKI GCWGC 1 cut(s) 125
ApoI RAATTY 1 cut(s) 110
AspS9I GGNCC 3 cut(s) 172, 257, 300
AsuHPI GGTGA 3 cut(s) 73, 179, 199
AvaI CYCGRG 3 cut(s) 147, 372, 424
AvaII GGWCC 2 cut(s) 172, 257
BalI TGGCCA 1 cut(s) 237
BamHI GGATCC 1 cut(s) 138
BbvI GCAGC 1 cut(s) 112
BcgI CGANNNNNNTGC 2 cut(s) 368, 402
BciT130I CCWGG 1 cut(s) 262
BclI TGATCA 1 cut(s) 31
BcoDI GTCTC 1 cut(s) 224
BisI GCNGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 127
Bme1390I CCNGG 1 cut(s) 262
Bme18I GGWCC 2 cut(s) 172, 257
BmeT110I CYCGRG 3 cut(s) 147, 372, 424
BmgT120I GGNCC 3 cut(s) 172, 257, 300
BmiI GGNNCC 3 cut(s) 140, 259, 447
BmrFI CCNGG 1 cut(s) 262
BmsI GCATC 1 cut(s) 297
BoxI GACNNNNGTC 1 cut(s) 262
BpuEI CTTGAG 2 cut(s) 48, 338
Bsa29I ATCGAT 1 cut(s) 42
BsaAI YACGTR 1 cut(s) 191
BsaJI CCNNGG 5 cut(s) 260, 303, 361, 371, 406
Bse1I ACTGG 1 cut(s) 238
BseBI CCWGG 1 cut(s) 262
BseCI ATCGAT 1 cut(s) 42
BseDI CCNNGG 5 cut(s) 260, 303, 361, 371, 406
BseGI GGATG 1 cut(s) 328
BseMII CTCAG 1 cut(s) 219
BseNI ACTGG 1 cut(s) 238
BseXI GCAGC 1 cut(s) 112
BsgI GTGCAG 1 cut(s) 432
BshFI GGCC 2 cut(s) 237, 301
BshVI ATCGAT 1 cut(s) 42
BsiHKCI CYCGRG 3 cut(s) 147, 372, 424
BsmAI GTCTC 1 cut(s) 224
BsnI GGCC 2 cut(s) 237, 301
BsoBI CYCGRG 3 cut(s) 147, 372, 424
Bsp143I GATC 8 cut(s) 31, 39, 43, 58, 138, 243, 389, 434
BspANI GGCC 2 cut(s) 237, 301
BspCNI CTCAG 1 cut(s) 220
BspDI ATCGAT 1 cut(s) 42
BspLI GGNNCC 3 cut(s) 140, 259, 447
BspPI GGATC 6 cut(s) 53, 133, 146, 238, 384, 442
BsrI ACTGG 1 cut(s) 238
BssECI CCNNGG 5 cut(s) 260, 303, 361, 371, 406
BssMI GATC 8 cut(s) 31, 39, 43, 58, 138, 243, 389, 434
BssT1I CCWWGG 2 cut(s) 303, 406
Bst2UI CCWGG 1 cut(s) 262
Bst4CI ACNGT 1 cut(s) 200
BstBAI YACGTR 1 cut(s) 191
BstC8I GCNNGC 1 cut(s) 421
BstDEI CTNAG 1 cut(s) 228
BstDSI CCRYGG 1 cut(s) 361
BstF5I GGATG 1 cut(s) 328
BstKTI GATC 8 cut(s) 34, 42, 46, 61, 141, 246, 392, 437
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 8 cut(s) 31, 39, 43, 58, 138, 243, 389, 434
BstNI CCWGG 1 cut(s) 262
BstPAI GACNNNNGTC 1 cut(s) 262
BstSCI CCNGG 1 cut(s) 260
BstV1I GCAGC 1 cut(s) 112
BstX2I RGATCY 1 cut(s) 138
BstYI RGATCY 1 cut(s) 138
Bsu15I ATCGAT 1 cut(s) 42
BsuRI GGCC 2 cut(s) 237, 301
BsuTUI ATCGAT 1 cut(s) 42
BtgI CCRYGG 1 cut(s) 361
BtsCI GGATG 1 cut(s) 328
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 120
Cac8I GCNNGC 1 cut(s) 421
CaiI CAGNNNCTG 1 cut(s) 419
Cfr13I GGNCC 3 cut(s) 172, 257, 300
ClaI ATCGAT 1 cut(s) 42
Csp6I GTAC 1 cut(s) 201
CviAII CATG 2 cut(s) 35, 283
CviQI GTAC 1 cut(s) 201
DdeI CTNAG 1 cut(s) 228
DpnI GATC 8 cut(s) 33, 41, 45, 60, 140, 245, 391, 436
DpnII GATC 8 cut(s) 31, 39, 43, 58, 138, 243, 389, 434
EaeI YGGCCR 1 cut(s) 235
Eco130I CCWWGG 2 cut(s) 303, 406
Eco47I GGWCC 2 cut(s) 172, 257
Eco88I CYCGRG 3 cut(s) 147, 372, 424
EcoO109I RGGNCCY 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 260
EcoT14I CCWWGG 2 cut(s) 303, 406
ErhI CCWWGG 2 cut(s) 303, 406
FaeI CATG 2 cut(s) 38, 286
FaiI YATR 8 cut(s) 36, 101, 177, 179, 188, 212, 272, 284
FatI CATG 2 cut(s) 34, 282
FbaI TGATCA 1 cut(s) 31
Fnu4HI GCNGC 1 cut(s) 126
FokI GGATG 1 cut(s) 335
Fsp4HI GCNGC 1 cut(s) 126
GluI GCNGC 1 cut(s) 126
HaeIII GGCC 2 cut(s) 237, 301
Hin1II CATG 2 cut(s) 38, 286
HinfI GANTC 2 cut(s) 352, 385
HphI GGTGA 3 cut(s) 73, 179, 199
Hpy188I TCNGA 4 cut(s) 10, 138, 160, 357
HpyCH4III ACNGT 1 cut(s) 200
HpyCH4IV ACGT 1 cut(s) 190
HpyCH4V TGCA 1 cut(s) 413
HpyF3I CTNAG 1 cut(s) 228
HpySE526I ACGT 1 cut(s) 190
Hsp92II CATG 2 cut(s) 38, 286
Ksp22I TGATCA 1 cut(s) 31
Kzo9I GATC 8 cut(s) 31, 39, 43, 58, 138, 243, 389, 434
LmnI GCTCC 1 cut(s) 445
LpnPI CCDG 9 cut(s) 39, 69, 219, 247, 274, 326, 342, 405, 423
Lsp1109I GCAGC 1 cut(s) 112
LweI GCATC 1 cut(s) 297
MaeII ACGT 1 cut(s) 190
MaeIII GTNAC 1 cut(s) 275
MalI GATC 8 cut(s) 33, 41, 45, 60, 140, 245, 391, 436
MboI GATC 8 cut(s) 31, 39, 43, 58, 138, 243, 389, 434
MfeI CAATTG 1 cut(s) 239
MflI RGATCY 1 cut(s) 138
MlsI TGGCCA 1 cut(s) 237
MluCI AATT 2 cut(s) 110, 239
MluNI TGGCCA 1 cut(s) 237
MlyI GAGTC 1 cut(s) 379
MnlI CCTC 9 cut(s) 72, 87, 152, 163, 217, 248, 301, 313, 381
Mox20I TGGCCA 1 cut(s) 237
MscI TGGCCA 1 cut(s) 237
Msp20I TGGCCA 1 cut(s) 237
MspR9I CCNGG 1 cut(s) 262
MunI CAATTG 1 cut(s) 239
MvaI CCWGG 1 cut(s) 262
NdeII GATC 8 cut(s) 31, 39, 43, 58, 138, 243, 389, 434
NlaIII CATG 2 cut(s) 38, 286
NlaIV GGNNCC 3 cut(s) 140, 259, 447
NmuCI GTSAC 1 cut(s) 275
PaeR7I CTCGAG 1 cut(s) 147
PcsI WCGNNNNNNNCGW 1 cut(s) 196
PfeI GAWTC 1 cut(s) 352
PkrI GCNGC 1 cut(s) 127
PleI GAGTC 1 cut(s) 379
PpsI GAGTC 1 cut(s) 379
Ppu21I YACGTR 1 cut(s) 191
PpuMI RGGWCCY 1 cut(s) 257
PshAI GACNNNNGTC 1 cut(s) 262
Psp5II RGGWCCY 1 cut(s) 257
Psp6I CCWGG 1 cut(s) 260
PspGI CCWGG 1 cut(s) 260
PspN4I GGNNCC 3 cut(s) 140, 259, 447
PspPI GGNCC 3 cut(s) 172, 257, 300
PspPPI RGGWCCY 1 cut(s) 257
PspXI VCTCGAGB 1 cut(s) 147
PstNI CAGNNNCTG 1 cut(s) 419
PsuI RGATCY 1 cut(s) 138
RsaI GTAC 1 cut(s) 202
RsaNI GTAC 1 cut(s) 201
SatI GCNGC 1 cut(s) 126
Sau3AI GATC 8 cut(s) 31, 39, 43, 58, 138, 243, 389, 434
Sau96I GGNCC 3 cut(s) 172, 257, 300
SchI GAGTC 1 cut(s) 379
ScrFI CCNGG 1 cut(s) 262
SetI ASST 8 cut(s) 58, 70, 79, 106, 174, 187, 193, 442
SfaNI GCATC 1 cut(s) 297
Sfr274I CTCGAG 1 cut(s) 147
SinI GGWCC 2 cut(s) 172, 257
SlaI CTCGAG 1 cut(s) 147
SmlI CTYRAG 3 cut(s) 63, 147, 317
SmoI CTYRAG 3 cut(s) 63, 147, 317
Sse9I AATT 2 cut(s) 110, 239
StyD4I CCNGG 1 cut(s) 260
StyI CCWWGG 2 cut(s) 303, 406
TaaI ACNGT 1 cut(s) 200
TaiI ACGT 1 cut(s) 193
TaqI TCGA 3 cut(s) 42, 148, 388
TasI AATT 2 cut(s) 110, 239
TfiI GAWTC 1 cut(s) 352
TscAI CASTG 1 cut(s) 127
TseFI GTSAC 1 cut(s) 275
TseI GCWGC 1 cut(s) 125
Tsp45I GTSAC 1 cut(s) 275
TspDTI ATGAA 2 cut(s) 27, 323
TspGWI ACGGA 1 cut(s) 378
TspRI CASTG 1 cut(s) 127
VpaK11BI GGWCC 2 cut(s) 172, 257
XapI RAATTY 1 cut(s) 110
XhoI CTCGAG 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.