Rmu_sc0004967.1_g000014

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004967.1
OG0000073
Physical Location & Seq
Reverse (-)
81416 .. 82838
1423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004967.1_g000014.1.cds

Sequence Viewer

Length: 1185 bp
atgggaatctggaaatcacttggacagattcgcattatgagagtcaagaaaaacacctattgcctcactgttggatctgagaagctggccaacaagctactggaggatagtctatggattgtcaaaggtcattgtttctccatccatcattgccctcgttaccaatccatcgatgatattgttacacatagagcgacatactggatccaggcacatggagtccctcttgaacagatgactgttaacaatggaagaaagctagagattcttctgggctctgttattgaaggtgaggacccttttaaagttggtaacaaaggttttttgaggttaagagtggattttgacactcgaaaacctcttgcaacttttagaccggtgttcacacaatcctctcatcctcttgaatatctgtatgctcctactaccagaatttttagccggagaaaatcatcagcaagccaccaacagattttgaattctcgagaggcaccaactagtgactatgacagaacagttacaacacagtacccaactactgatagtgacctctcttccggaccaacacatgcctctgctgaagcaactctgccccctgctaggatacaaaaagctacaaaagagcttatccatcagggacctaacatgtggaaccctgatgctcatgggaccctcttcagaaacgggagtgttactagagctttaaatgtgcaacgcctcagagtgtattccaccatgggccttcacaagaatgcttactttttttccccatcccaaccttctagaactcccccaaaagcccctttggaagcccaattggatcctcctgcaaaaaattcacctgaccaattgacaaagaagcgacagaaaagaaaattaactactgatcagcctccaaaatctactgtaaagaaagcaaaaattccaaaaagtcctagcctcagactctcttcaggaggtggtaggggtaggggaagagaacgcggtaggggtaaaggcaaagtgggacagaacatccagcttactgaaatgggcactagtgctacttcactcacagaggccgcaatgttagggatgcctattactgatggtactgtggaaacagtcaacaaggaaggtacggaggacctaaccacctctagggttatggcggctggcctagctcagctgcaagcagtgttctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_3 zf-CCHC_4

Protein Analysis

394

Amino Acids

43.68

Weight (kDa)

10.07

Isoelectric Point (pI)

41.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 490
AccII CGCG 1 cut(s) 984
AccIII TCCGGA 1 cut(s) 557
AciI CCGC 3 cut(s) 984, 1062, 1151
AclWI GGATC 5 cut(s) 82, 199, 212, 815, 828
AcoI YGGCCR 1 cut(s) 87
AcsI RAATTY 4 cut(s) 432, 478, 835, 921
AcuI CTGAAG 3 cut(s) 600, 661, 936
AfaI GTAC 3 cut(s) 530, 1093, 1120
AfiI CCNNNNNNNGG 2 cut(s) 600, 1140
AflIII ACRYGT 1 cut(s) 645
AgeI ACCGGT 1 cut(s) 376
AgsI TTSAA 4 cut(s) 230, 287, 407, 478
AhlI ACTAGT 2 cut(s) 497, 1037
AjnI CCWGG 1 cut(s) 207
AluBI AGCT 9 cut(s) 85, 97, 259, 614, 625, 701, 1021, 1163, 1168
AluI AGCT 9 cut(s) 85, 97, 259, 614, 625, 701, 1021, 1163, 1168
AlwI GGATC 5 cut(s) 82, 199, 212, 815, 828
Ama87I CYCGRG 1 cut(s) 483
Aor13HI TCCGGA 1 cut(s) 557
AoxI GGCC 4 cut(s) 87, 739, 1059, 1156
ApeKI GCWGC 1 cut(s) 1168
ApoI RAATTY 4 cut(s) 432, 478, 835, 921
AsiGI ACCGGT 1 cut(s) 376
AspS9I GGNCC 6 cut(s) 295, 560, 638, 669, 739, 1126
AsuHPI GGTGA 2 cut(s) 302, 831
AvaI CYCGRG 1 cut(s) 483
AvaII GGWCC 5 cut(s) 295, 560, 638, 669, 1126
BaeGI GKGCMC 1 cut(s) 1037
BalI TGGCCA 1 cut(s) 89
BamHI GGATCC 2 cut(s) 204, 820
BanI GGYRCC 1 cut(s) 490
BanII GRGCYC 1 cut(s) 278
BbvI GCAGC 1 cut(s) 1155
BccI CCATC 6 cut(s) 149, 153, 176, 639, 778, 1082
BciT130I CCWGG 1 cut(s) 209
BciVI GTATCC 1 cut(s) 597
BclI TGATCA 1 cut(s) 886
BcuI ACTAGT 2 cut(s) 497, 1037
BfaI CTAG 9 cut(s) 260, 498, 600, 696, 783, 936, 1038, 1140, 1160
BfuI GTATCC 1 cut(s) 597
BisI GCNGC 3 cut(s) 1062, 1152, 1169
BlpI GCTNAGC 1 cut(s) 1164
BlsI GCNGC 3 cut(s) 1063, 1153, 1170
Bme1390I CCNGG 1 cut(s) 209
Bme18I GGWCC 5 cut(s) 295, 560, 638, 669, 1126
BmeT110I CYCGRG 1 cut(s) 483
BmgT120I GGNCC 6 cut(s) 295, 560, 638, 669, 739, 1126
BmiI GGNNCC 8 cut(s) 206, 297, 492, 639, 653, 670, 671, 822
BmrFI CCNGG 1 cut(s) 209
BmsI GCATC 2 cut(s) 649, 1065
BpmI CTGGAG 1 cut(s) 122
Bpu1102I GCTNAGC 1 cut(s) 1164
Bsa29I ATCGAT 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 735
BsaWI WCCGGW 2 cut(s) 376, 557
Bsc4I CCNNNNNNNGG 2 cut(s) 600, 1140
Bse118I RCCGGY 1 cut(s) 376
Bse1I ACTGG 2 cut(s) 105, 206
Bse3DI GCAATG 2 cut(s) 148, 1071
BseAI TCCGGA 1 cut(s) 557
BseBI CCWGG 1 cut(s) 209
BseCI ATCGAT 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 735
BseGI GGATG 5 cut(s) 141, 397, 770, 1014, 1080
BseLI CCNNNNNNNGG 2 cut(s) 600, 1140
BseMI GCAATG 2 cut(s) 148, 1071
BseMII CTCAG 4 cut(s) 69, 733, 955, 1178
BseNI ACTGG 2 cut(s) 105, 206
BseSI GKGCMC 1 cut(s) 1037
BseXI GCAGC 1 cut(s) 1155
Bsh1236I CGCG 1 cut(s) 984
BshFI GGCC 4 cut(s) 89, 741, 1061, 1158
BshNI GGYRCC 1 cut(s) 490
BshTI ACCGGT 1 cut(s) 376
BshVI ATCGAT 1 cut(s) 171
BsiHKCI CYCGRG 1 cut(s) 483
BsiSI CCGG 3 cut(s) 377, 442, 558
BslFI GGGAC 4 cut(s) 206, 651, 682, 1020
BslI CCNNNNNNNGG 2 cut(s) 600, 1140
BsmFI GGGAC 4 cut(s) 206, 651, 682, 1020
BsmI GAATGC 1 cut(s) 757
BsnI GGCC 4 cut(s) 89, 741, 1061, 1158
BsoBI CYCGRG 1 cut(s) 483
Bsp1286I GDGCHC 2 cut(s) 278, 1037
Bsp13I TCCGGA 1 cut(s) 557
Bsp143I GATC 4 cut(s) 74, 204, 820, 886
Bsp1720I GCTNAGC 1 cut(s) 1164
Bsp19I CCATGG 1 cut(s) 735
BspACI CCGC 3 cut(s) 984, 1062, 1151
BspANI GGCC 4 cut(s) 89, 741, 1061, 1158
BspCNI CTCAG 4 cut(s) 70, 732, 954, 1177
BspDI ATCGAT 1 cut(s) 171
BspEI TCCGGA 1 cut(s) 557
BspFNI CGCG 1 cut(s) 984
BspLI GGNNCC 8 cut(s) 206, 297, 492, 639, 653, 670, 671, 822
BspPI GGATC 5 cut(s) 82, 199, 212, 815, 828
BspT107I GGYRCC 1 cut(s) 490
BsrDI GCAATG 2 cut(s) 148, 1071
BsrFI RCCGGY 1 cut(s) 376
BsrI ACTGG 2 cut(s) 105, 206
BssAI RCCGGY 1 cut(s) 376
BssECI CCNNGG 1 cut(s) 735
BssMI GATC 4 cut(s) 74, 204, 820, 886
BssT1I CCWWGG 1 cut(s) 735
Bst2UI CCWGG 1 cut(s) 209
Bst4CI ACNGT 7 cut(s) 70, 241, 517, 528, 907, 1096, 1105
Bst6I CTCTTC 4 cut(s) 559, 680, 955, 970
BstC8I GCNNGC 4 cut(s) 87, 460, 1156, 1173
BstDEI CTNAG 4 cut(s) 78, 719, 941, 1164
BstDSI CCRYGG 1 cut(s) 735
BstF5I GGATG 5 cut(s) 141, 397, 770, 1014, 1080
BstFNI CGCG 1 cut(s) 984
BstKTI GATC 4 cut(s) 77, 207, 823, 889
BstMBI GATC 4 cut(s) 74, 204, 820, 886
BstMWI GCNNNNNNNGC 1 cut(s) 1160
BstNI CCWGG 1 cut(s) 209
BstNSI RCATGY 2 cut(s) 572, 649
BstSCI CCNGG 1 cut(s) 207
BstSLI GKGCMC 1 cut(s) 1037
BstUI CGCG 1 cut(s) 984
BstV1I GCAGC 1 cut(s) 1155
BstX2I RGATCY 3 cut(s) 74, 204, 820
BstXI CCANNNNNNTGG 1 cut(s) 215
BstYI RGATCY 3 cut(s) 74, 204, 820
Bsu15I ATCGAT 1 cut(s) 171
BsuI GTATCC 1 cut(s) 597
BsuRI GGCC 4 cut(s) 89, 741, 1061, 1158
BsuTUI ATCGAT 1 cut(s) 171
BtgI CCRYGG 1 cut(s) 735
BtsCI GGATG 5 cut(s) 141, 397, 770, 1014, 1080
BtsI GCAGTG 1 cut(s) 1182
BtsIMutI CAGTG 2 cut(s) 66, 1182
Cac8I GCNNGC 4 cut(s) 87, 460, 1156, 1173
Cfr10I RCCGGY 1 cut(s) 376
Cfr13I GGNCC 6 cut(s) 295, 560, 638, 669, 739, 1126
ClaI ATCGAT 1 cut(s) 171
Csp6I GTAC 3 cut(s) 529, 1092, 1119
CspAI ACCGGT 1 cut(s) 376
CviAII CATG 5 cut(s) 215, 569, 646, 665, 736
CviQI GTAC 3 cut(s) 529, 1092, 1119
DdeI CTNAG 4 cut(s) 78, 719, 941, 1164
DpnI GATC 4 cut(s) 76, 206, 822, 888
DpnII GATC 4 cut(s) 74, 204, 820, 886
DraI TTTAAA 2 cut(s) 304, 705
EaeI YGGCCR 1 cut(s) 87
Eam1104I CTCTTC 4 cut(s) 559, 680, 955, 970
EarI CTCTTC 4 cut(s) 559, 680, 955, 970
Eco130I CCWWGG 1 cut(s) 735
Eco24I GRGCYC 1 cut(s) 278
Eco47I GGWCC 5 cut(s) 295, 560, 638, 669, 1126
Eco57I CTGAAG 3 cut(s) 600, 661, 936
Eco88I CYCGRG 1 cut(s) 483
EcoO109I RGGNCCY 4 cut(s) 295, 638, 669, 1126
EcoRI GAATTC 1 cut(s) 478
EcoRII CCWGG 1 cut(s) 207
EcoT14I CCWWGG 1 cut(s) 735
EcoT38I GRGCYC 1 cut(s) 278
ErhI CCWWGG 1 cut(s) 735
FaeI CATG 5 cut(s) 218, 572, 649, 668, 739
FaqI GGGAC 4 cut(s) 206, 651, 682, 1020
FatI CATG 5 cut(s) 214, 568, 645, 664, 735
FbaI TGATCA 1 cut(s) 886
Fnu4HI GCNGC 3 cut(s) 1062, 1152, 1169
FokI GGATG 5 cut(s) 128, 384, 757, 1001, 1087
FriOI GRGCYC 1 cut(s) 278
Fsp4HI GCNGC 3 cut(s) 1062, 1152, 1169
FspBI CTAG 9 cut(s) 260, 498, 600, 696, 783, 936, 1038, 1140, 1160
GluI GCNGC 3 cut(s) 1062, 1152, 1169
GsuI CTGGAG 1 cut(s) 122
HaeIII GGCC 4 cut(s) 89, 741, 1061, 1158
HapII CCGG 3 cut(s) 377, 442, 558
Hin1II CATG 5 cut(s) 218, 572, 649, 668, 739
HincII GTYRAC 2 cut(s) 244, 1108
HindII GTYRAC 2 cut(s) 244, 1108
HinfI GANTC 6 cut(s) 6, 28, 42, 219, 265, 945
HpaI GTTAAC 1 cut(s) 244
HpaII CCGG 3 cut(s) 377, 442, 558
HphI GGTGA 2 cut(s) 302, 831
Hpy166II GTNNAC 3 cut(s) 244, 384, 1108
Hpy188I TCNGA 4 cut(s) 79, 680, 722, 944
Hpy188III TCNNGA 9 cut(s) 10, 46, 227, 404, 483, 485, 558, 783, 954
Hpy8I GTNNAC 3 cut(s) 244, 384, 1108
HpyAV CCTTC 4 cut(s) 281, 752, 789, 1109
HpyCH4III ACNGT 7 cut(s) 70, 241, 517, 528, 907, 1096, 1105
HpyCH4V TGCA 4 cut(s) 365, 712, 830, 1171
HpyF10VI GCNNNNNNNGC 1 cut(s) 1160
HpyF3I CTNAG 4 cut(s) 78, 719, 941, 1164
Hsp92II CATG 5 cut(s) 218, 572, 649, 668, 739
KflI GGGWCCC 1 cut(s) 669
Kpn2I TCCGGA 1 cut(s) 557
Ksp22I TGATCA 1 cut(s) 886
KspAI GTTAAC 1 cut(s) 244
Kzo9I GATC 4 cut(s) 74, 204, 820, 886
LmnI GCTCC 1 cut(s) 424
Lsp1109I GCAGC 1 cut(s) 1155
LweI GCATC 2 cut(s) 649, 1065
MaeI CTAG 9 cut(s) 260, 498, 600, 696, 783, 936, 1038, 1140, 1160
MaeIII GTNAC 7 cut(s) 158, 181, 311, 500, 517, 545, 691
MalI GATC 4 cut(s) 76, 206, 822, 888
MboI GATC 4 cut(s) 74, 204, 820, 886
MboII GAAGA 6 cut(s) 260, 264, 546, 667, 942, 987
MfeI CAATTG 2 cut(s) 815, 848
MflI RGATCY 3 cut(s) 74, 204, 820
MhlI GDGCHC 2 cut(s) 278, 1037
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 7 cut(s) 432, 478, 815, 835, 848, 875, 921
MluNI TGGCCA 1 cut(s) 89
MlyI GAGTC 3 cut(s) 51, 228, 939
MmeI TCCRAC 1 cut(s) 52
Mox20I TGGCCA 1 cut(s) 89
MroI TCCGGA 1 cut(s) 557
MscI TGGCCA 1 cut(s) 89
MseI TTAA 5 cut(s) 243, 303, 332, 704, 878
MslI CAYNNNNRTG 1 cut(s) 750
Msp20I TGGCCA 1 cut(s) 89
MspA1I CMGCKG 1 cut(s) 1168
MspI CCGG 3 cut(s) 377, 442, 558
MspR9I CCNGG 1 cut(s) 209
MunI CAATTG 2 cut(s) 815, 848
Mva1269I GAATGC 1 cut(s) 757
MvaI CCWGG 1 cut(s) 209
MvnI CGCG 1 cut(s) 984
MwoI GCNNNNNNNGC 1 cut(s) 1160
NcoI CCATGG 1 cut(s) 735
NdeII GATC 4 cut(s) 74, 204, 820, 886
NlaIII CATG 5 cut(s) 218, 572, 649, 668, 739
NlaIV GGNNCC 8 cut(s) 206, 297, 492, 639, 653, 670, 671, 822
NmuCI GTSAC 2 cut(s) 500, 545
NspI RCATGY 2 cut(s) 572, 649
PaeR7I CTCGAG 1 cut(s) 483
PciI ACATGT 1 cut(s) 645
PctI GAATGC 1 cut(s) 757
PfeI GAWTC 3 cut(s) 6, 28, 265
PinAI ACCGGT 1 cut(s) 376
PkrI GCNGC 3 cut(s) 1063, 1153, 1170
PleI GAGTC 3 cut(s) 50, 227, 939
PpsI GAGTC 3 cut(s) 50, 227, 939
PpuMI RGGWCCY 4 cut(s) 295, 638, 669, 1126
PscI ACATGT 1 cut(s) 645
Psp5II RGGWCCY 4 cut(s) 295, 638, 669, 1126
Psp6I CCWGG 1 cut(s) 207
PspGI CCWGG 1 cut(s) 207
PspN4I GGNNCC 8 cut(s) 206, 297, 492, 639, 653, 670, 671, 822
PspPI GGNCC 6 cut(s) 295, 560, 638, 669, 739, 1126
PspPPI RGGWCCY 4 cut(s) 295, 638, 669, 1126
PsuI RGATCY 3 cut(s) 74, 204, 820
PvuII CAGCTG 1 cut(s) 1168
RsaI GTAC 3 cut(s) 530, 1093, 1120
RsaNI GTAC 3 cut(s) 529, 1092, 1119
RseI CAYNNNNRTG 1 cut(s) 750
SaqAI TTAA 5 cut(s) 243, 303, 332, 704, 878
SatI GCNGC 3 cut(s) 1062, 1152, 1169
Sau3AI GATC 4 cut(s) 74, 204, 820, 886
Sau96I GGNCC 6 cut(s) 295, 560, 638, 669, 739, 1126
SchI GAGTC 3 cut(s) 51, 228, 939
ScrFI CCNGG 1 cut(s) 209
SduI GDGCHC 2 cut(s) 278, 1037
SfaNI GCATC 2 cut(s) 649, 1065
Sfr274I CTCGAG 1 cut(s) 483
SinI GGWCC 5 cut(s) 295, 560, 638, 669, 1126
SlaI CTCGAG 1 cut(s) 483
SmiMI CAYNNNNRTG 1 cut(s) 750
SmlI CTYRAG 1 cut(s) 483
SmoI CTYRAG 1 cut(s) 483
SpeI ACTAGT 2 cut(s) 497, 1037
Sse9I AATT 7 cut(s) 432, 478, 815, 835, 848, 875, 921
SsiI CCGC 3 cut(s) 984, 1062, 1151
SspMI CTAG 9 cut(s) 260, 498, 600, 696, 783, 936, 1038, 1140, 1160
StyD4I CCNGG 1 cut(s) 207
StyI CCWWGG 1 cut(s) 735
TaaI ACNGT 7 cut(s) 70, 241, 517, 528, 907, 1096, 1105
TaqI TCGA 3 cut(s) 171, 352, 484
TasI AATT 7 cut(s) 432, 478, 815, 835, 848, 875, 921
TauI GCSGC 2 cut(s) 1064, 1154
TfiI GAWTC 3 cut(s) 6, 28, 265
Tru1I TTAA 5 cut(s) 243, 303, 332, 704, 878
Tru9I TTAA 5 cut(s) 243, 303, 332, 704, 878
TscAI CASTG 2 cut(s) 73, 1182
TseFI GTSAC 2 cut(s) 500, 545
TseI GCWGC 1 cut(s) 1168
Tsp45I GTSAC 2 cut(s) 500, 545
TspGWI ACGGA 1 cut(s) 1136
TspRI CASTG 2 cut(s) 73, 1182
VpaK11BI GGWCC 5 cut(s) 295, 560, 638, 669, 1126
XapI RAATTY 4 cut(s) 432, 478, 835, 921
XbaI TCTAGA 1 cut(s) 782
XceI RCATGY 2 cut(s) 572, 649
XcmI CCANNNNNNNNNTGG 1 cut(s) 97
XhoI CTCGAG 1 cut(s) 483
XspI CTAG 9 cut(s) 260, 498, 600, 696, 783, 936, 1038, 1140, 1160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.