Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 128 |
| AccB1I | GGYRCC | 1 cut(s) | 128 |
| AccI | GTMKAC | 1 cut(s) | 99 |
| AciI | CCGC | 1 cut(s) | 633 |
| AclWI | GGATC | 1 cut(s) | 470 |
| AcoI | YGGCCR | 1 cut(s) | 332 |
| AcsI | RAATTY | 3 cut(s) | 692, 833, 896 |
| AfaI | GTAC | 2 cut(s) | 130, 324 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 158, 794 |
| AgsI | TTSAA | 3 cut(s) | 41, 628, 838 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 201 |
| AjnI | CCWGG | 2 cut(s) | 102, 669 |
| AluBI | AGCT | 6 cut(s) | 176, 265, 374, 439, 545, 559 |
| AluI | AGCT | 6 cut(s) | 176, 265, 374, 439, 545, 559 |
| AlwI | GGATC | 1 cut(s) | 470 |
| Ama87I | CYCGRG | 1 cut(s) | 480 |
| AoxI | GGCC | 2 cut(s) | 332, 643 |
| ApeKI | GCWGC | 2 cut(s) | 173, 935 |
| ApoI | RAATTY | 3 cut(s) | 692, 833, 896 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 72, 104 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 617 |
| Asp718I | GGTACC | 1 cut(s) | 128 |
| AspS9I | GGNCC | 1 cut(s) | 409 |
| AsuC2I | CCSGG | 1 cut(s) | 153 |
| AsuHPI | GGTGA | 2 cut(s) | 38, 664 |
| AsuII | TTCGAA | 1 cut(s) | 78 |
| AvaI | CYCGRG | 1 cut(s) | 480 |
| AvaII | GGWCC | 1 cut(s) | 409 |
| BalI | TGGCCA | 1 cut(s) | 334 |
| BanI | GGYRCC | 1 cut(s) | 128 |
| BanII | GRGCYC | 1 cut(s) | 458 |
| BbsI | GAAGAC | 2 cut(s) | 200, 541 |
| BbvI | GCAGC | 2 cut(s) | 185, 922 |
| BccI | CCATC | 2 cut(s) | 77, 915 |
| BciT130I | CCWGG | 2 cut(s) | 104, 671 |
| BciVI | GTATCC | 2 cut(s) | 378, 865 |
| BcnI | CCSGG | 1 cut(s) | 153 |
| BfaI | CTAG | 4 cut(s) | 158, 542, 564, 641 |
| BfmI | CTRYAG | 1 cut(s) | 734 |
| BfuI | GTATCC | 2 cut(s) | 378, 865 |
| BisI | GCNGC | 2 cut(s) | 174, 936 |
| BlsI | GCNGC | 2 cut(s) | 175, 937 |
| Bme1390I | CCNGG | 3 cut(s) | 104, 153, 671 |
| Bme18I | GGWCC | 1 cut(s) | 409 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 201 |
| BmeT110I | CYCGRG | 1 cut(s) | 480 |
| BmgT120I | GGNCC | 1 cut(s) | 409 |
| BmiI | GGNNCC | 1 cut(s) | 130 |
| BmrFI | CCNGG | 3 cut(s) | 104, 153, 671 |
| BpiI | GAAGAC | 2 cut(s) | 200, 541 |
| BpmI | CTGGAG | 1 cut(s) | 125 |
| Bpu14I | TTCGAA | 1 cut(s) | 78 |
| BpuEI | CTTGAG | 1 cut(s) | 380 |
| BpuMI | CCSGG | 1 cut(s) | 153 |
| BsaJI | CCNNGG | 1 cut(s) | 293 |
| BsaWI | WCCGGW | 2 cut(s) | 769, 794 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 158, 794 |
| Bse1I | ACTGG | 2 cut(s) | 335, 743 |
| BseBI | CCWGG | 2 cut(s) | 104, 671 |
| BseDI | CCNNGG | 1 cut(s) | 293 |
| BseGI | GGATG | 2 cut(s) | 8, 926 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 158, 794 |
| BseMII | CTCAG | 1 cut(s) | 471 |
| BseNI | ACTGG | 2 cut(s) | 335, 743 |
| BseXI | GCAGC | 2 cut(s) | 185, 922 |
| BseYI | CCCAGC | 1 cut(s) | 439 |
| BsgI | GTGCAG | 1 cut(s) | 682 |
| BshFI | GGCC | 2 cut(s) | 334, 645 |
| BshNI | GGYRCC | 1 cut(s) | 128 |
| BsiHKCI | CYCGRG | 1 cut(s) | 480 |
| BsiSI | CCGG | 3 cut(s) | 152, 770, 795 |
| BslFI | GGGAC | 1 cut(s) | 178 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 158, 794 |
| BsmFI | GGGAC | 1 cut(s) | 178 |
| BsnI | GGCC | 2 cut(s) | 334, 645 |
| BsoBI | CYCGRG | 1 cut(s) | 480 |
| Bsp119I | TTCGAA | 1 cut(s) | 78 |
| Bsp1286I | GDGCHC | 1 cut(s) | 458 |
| Bsp143I | GATC | 3 cut(s) | 355, 475, 588 |
| Bsp19I | CCATGG | 1 cut(s) | 293 |
| BspACI | CCGC | 1 cut(s) | 633 |
| BspANI | GGCC | 2 cut(s) | 334, 645 |
| BspCNI | CTCAG | 1 cut(s) | 470 |
| BspHI | TCATGA | 1 cut(s) | 180 |
| BspLI | GGNNCC | 1 cut(s) | 130 |
| BspPI | GGATC | 1 cut(s) | 470 |
| BspT104I | TTCGAA | 1 cut(s) | 78 |
| BspT107I | GGYRCC | 1 cut(s) | 128 |
| BsrI | ACTGG | 2 cut(s) | 335, 743 |
| BssECI | CCNNGG | 1 cut(s) | 293 |
| BssMI | GATC | 3 cut(s) | 355, 475, 588 |
| BssT1I | CCWWGG | 1 cut(s) | 293 |
| Bst2UI | CCWGG | 2 cut(s) | 104, 671 |
| Bst4CI | ACNGT | 3 cut(s) | 250, 290, 322 |
| BstBI | TTCGAA | 1 cut(s) | 78 |
| BstC8I | GCNNGC | 3 cut(s) | 267, 557, 661 |
| BstDEI | CTNAG | 2 cut(s) | 168, 457 |
| BstDSI | CCRYGG | 1 cut(s) | 293 |
| BstF5I | GGATG | 2 cut(s) | 8, 926 |
| BstKTI | GATC | 3 cut(s) | 358, 478, 591 |
| BstMBI | GATC | 3 cut(s) | 355, 475, 588 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 630 |
| BstNI | CCWGG | 2 cut(s) | 104, 671 |
| BstSCI | CCNGG | 3 cut(s) | 102, 151, 669 |
| BstSFI | CTRYAG | 1 cut(s) | 734 |
| BstV1I | GCAGC | 2 cut(s) | 185, 922 |
| BstV2I | GAAGAC | 2 cut(s) | 200, 541 |
| BstX2I | RGATCY | 1 cut(s) | 475 |
| BstYI | RGATCY | 1 cut(s) | 475 |
| BsuI | GTATCC | 2 cut(s) | 378, 865 |
| BsuRI | GGCC | 2 cut(s) | 334, 645 |
| BtgI | CCRYGG | 1 cut(s) | 293 |
| BtsCI | GGATG | 2 cut(s) | 8, 926 |
| BtsIMutI | CAGTG | 2 cut(s) | 328, 750 |
| Cac8I | GCNNGC | 3 cut(s) | 267, 557, 661 |
| CciI | TCATGA | 1 cut(s) | 180 |
| Cfr13I | GGNCC | 1 cut(s) | 409 |
| CseI | GACGC | 1 cut(s) | 76 |
| CsiI | ACCWGGT | 1 cut(s) | 669 |
| Csp6I | GTAC | 2 cut(s) | 129, 323 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 898, 933 |
| CviAII | CATG | 5 cut(s) | 181, 294, 344, 395, 857 |
| CviQI | GTAC | 2 cut(s) | 129, 323 |
| DdeI | CTNAG | 2 cut(s) | 168, 457 |
| DpnI | GATC | 3 cut(s) | 357, 477, 590 |
| DpnII | GATC | 3 cut(s) | 355, 475, 588 |
| DriI | GACNNNNNGTC | 1 cut(s) | 201 |
| EaeI | YGGCCR | 1 cut(s) | 332 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 201 |
| Eco130I | CCWWGG | 1 cut(s) | 293 |
| Eco24I | GRGCYC | 1 cut(s) | 458 |
| Eco32I | GATATC | 1 cut(s) | 417 |
| Eco47I | GGWCC | 1 cut(s) | 409 |
| Eco88I | CYCGRG | 1 cut(s) | 480 |
| EcoRII | CCWGG | 2 cut(s) | 102, 669 |
| EcoRV | GATATC | 1 cut(s) | 417 |
| EcoT14I | CCWWGG | 1 cut(s) | 293 |
| EcoT38I | GRGCYC | 1 cut(s) | 458 |
| ErhI | CCWWGG | 1 cut(s) | 293 |
| FaeI | CATG | 5 cut(s) | 184, 297, 347, 398, 860 |
| FaqI | GGGAC | 1 cut(s) | 178 |
| FatI | CATG | 5 cut(s) | 180, 293, 343, 394, 856 |
| FauI | CCCGC | 1 cut(s) | 626 |
| FauNDI | CATATG | 1 cut(s) | 648 |
| FblI | GTMKAC | 1 cut(s) | 99 |
| Fnu4HI | GCNGC | 2 cut(s) | 174, 936 |
| FokI | GGATG | 1 cut(s) | 933 |
| FriOI | GRGCYC | 1 cut(s) | 458 |
| Fsp4HI | GCNGC | 2 cut(s) | 174, 936 |
| FspBI | CTAG | 4 cut(s) | 158, 542, 564, 641 |
| GluI | GCNGC | 2 cut(s) | 174, 936 |
| GsaI | CCCAGC | 1 cut(s) | 443 |
| GsuI | CTGGAG | 1 cut(s) | 125 |
| HaeIII | GGCC | 2 cut(s) | 334, 645 |
| HapII | CCGG | 3 cut(s) | 152, 770, 795 |
| HgaI | GACGC | 1 cut(s) | 76 |
| Hin1II | CATG | 5 cut(s) | 184, 297, 347, 398, 860 |
| HindIII | AAGCTT | 1 cut(s) | 263 |
| HinfI | GANTC | 3 cut(s) | 213, 483, 823 |
| HpaII | CCGG | 3 cut(s) | 152, 770, 795 |
| HphI | GGTGA | 2 cut(s) | 38, 664 |
| Hpy166II | GTNNAC | 3 cut(s) | 100, 676, 750 |
| Hpy188I | TCNGA | 5 cut(s) | 212, 259, 593, 789, 854 |
| Hpy188III | TCNNGA | 2 cut(s) | 181, 359 |
| Hpy8I | GTNNAC | 3 cut(s) | 100, 676, 750 |
| Hpy99I | CGWCG | 1 cut(s) | 92 |
| HpyAV | CCTTC | 4 cut(s) | 559, 811, 881, 908 |
| HpyCH4III | ACNGT | 3 cut(s) | 250, 290, 322 |
| HpyCH4IV | ACGT | 3 cut(s) | 300, 325, 598 |
| HpyCH4V | TGCA | 4 cut(s) | 140, 269, 663, 938 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 630 |
| HpyF3I | CTNAG | 2 cut(s) | 168, 457 |
| HpySE526I | ACGT | 3 cut(s) | 300, 325, 598 |
| Hsp92II | CATG | 5 cut(s) | 184, 297, 347, 398, 860 |
| KpnI | GGTACC | 1 cut(s) | 132 |
| Kzo9I | GATC | 3 cut(s) | 355, 475, 588 |
| LmnI | GCTCC | 2 cut(s) | 790, 810 |
| Lsp1109I | GCAGC | 2 cut(s) | 185, 922 |
| MabI | ACCWGGT | 1 cut(s) | 669 |
| MaeI | CTAG | 4 cut(s) | 158, 542, 564, 641 |
| MaeII | ACGT | 3 cut(s) | 300, 325, 598 |
| MaeIII | GTNAC | 4 cut(s) | 276, 326, 652, 862 |
| MalI | GATC | 3 cut(s) | 357, 477, 590 |
| MboI | GATC | 3 cut(s) | 355, 475, 588 |
| MboII | GAAGA | 7 cut(s) | 53, 158, 205, 241, 444, 485, 546 |
| MflI | RGATCY | 1 cut(s) | 475 |
| MhlI | GDGCHC | 1 cut(s) | 458 |
| MlsI | TGGCCA | 1 cut(s) | 334 |
| MluCI | AATT | 7 cut(s) | 73, 135, 681, 692, 833, 896, 928 |
| MluNI | TGGCCA | 1 cut(s) | 334 |
| MlyI | GAGTC | 1 cut(s) | 492 |
| MmeI | TCCRAC | 2 cut(s) | 812, 829 |
| Mox20I | TGGCCA | 1 cut(s) | 334 |
| MroXI | GAANNNNTTC | 1 cut(s) | 617 |
| MscI | TGGCCA | 1 cut(s) | 334 |
| MseI | TTAA | 1 cut(s) | 225 |
| MslI | CAYNNNNRTG | 1 cut(s) | 185 |
| Msp20I | TGGCCA | 1 cut(s) | 334 |
| MspI | CCGG | 3 cut(s) | 152, 770, 795 |
| MspR9I | CCNGG | 3 cut(s) | 104, 153, 671 |
| MvaI | CCWGG | 2 cut(s) | 104, 671 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 630 |
| NciI | CCSGG | 1 cut(s) | 153 |
| NcoI | CCATGG | 1 cut(s) | 293 |
| NdeI | CATATG | 1 cut(s) | 648 |
| NdeII | GATC | 3 cut(s) | 355, 475, 588 |
| NlaIII | CATG | 5 cut(s) | 184, 297, 347, 398, 860 |
| NlaIV | GGNNCC | 1 cut(s) | 130 |
| NmuCI | GTSAC | 3 cut(s) | 326, 652, 862 |
| NspV | TTCGAA | 1 cut(s) | 78 |
| PaeR7I | CTCGAG | 1 cut(s) | 480 |
| PagI | TCATGA | 1 cut(s) | 180 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 84 |
| PdmI | GAANNNNTTC | 1 cut(s) | 617 |
| PfeI | GAWTC | 2 cut(s) | 213, 823 |
| PkrI | GCNGC | 2 cut(s) | 175, 937 |
| PleI | GAGTC | 1 cut(s) | 491 |
| PpsI | GAGTC | 1 cut(s) | 491 |
| Psp6I | CCWGG | 2 cut(s) | 102, 669 |
| PspFI | CCCAGC | 1 cut(s) | 439 |
| PspGI | CCWGG | 2 cut(s) | 102, 669 |
| PspN4I | GGNNCC | 1 cut(s) | 130 |
| PspPI | GGNCC | 1 cut(s) | 409 |
| PspXI | VCTCGAGB | 1 cut(s) | 480 |
| PsuI | RGATCY | 1 cut(s) | 475 |
| RsaI | GTAC | 2 cut(s) | 130, 324 |
| RsaNI | GTAC | 2 cut(s) | 129, 323 |
| RseI | CAYNNNNRTG | 1 cut(s) | 185 |
| SaqAI | TTAA | 1 cut(s) | 225 |
| SatI | GCNGC | 2 cut(s) | 174, 936 |
| Sau3AI | GATC | 3 cut(s) | 355, 475, 588 |
| Sau96I | GGNCC | 1 cut(s) | 409 |
| SchI | GAGTC | 1 cut(s) | 492 |
| ScrFI | CCNGG | 3 cut(s) | 104, 153, 671 |
| SduI | GDGCHC | 1 cut(s) | 458 |
| SexAI | ACCWGGT | 1 cut(s) | 669 |
| SfcI | CTRYAG | 1 cut(s) | 734 |
| Sfr274I | CTCGAG | 1 cut(s) | 480 |
| SfuI | TTCGAA | 1 cut(s) | 78 |
| SinI | GGWCC | 1 cut(s) | 409 |
| SlaI | CTCGAG | 1 cut(s) | 480 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 185 |
| SmlI | CTYRAG | 2 cut(s) | 359, 480 |
| SmoI | CTYRAG | 2 cut(s) | 359, 480 |
| Sse9I | AATT | 7 cut(s) | 73, 135, 681, 692, 833, 896, 928 |
| SsiI | CCGC | 1 cut(s) | 633 |
| SspI | AATATT | 1 cut(s) | 801 |
| SspMI | CTAG | 4 cut(s) | 158, 542, 564, 641 |
| StyD4I | CCNGG | 3 cut(s) | 102, 151, 669 |
| StyI | CCWWGG | 1 cut(s) | 293 |
| TaaI | ACNGT | 3 cut(s) | 250, 290, 322 |
| TaiI | ACGT | 3 cut(s) | 303, 328, 601 |
| TaqI | TCGA | 4 cut(s) | 78, 90, 282, 481 |
| TasI | AATT | 7 cut(s) | 73, 135, 681, 692, 833, 896, 928 |
| TfiI | GAWTC | 2 cut(s) | 213, 823 |
| Tru1I | TTAA | 1 cut(s) | 225 |
| Tru9I | TTAA | 1 cut(s) | 225 |
| TscAI | CASTG | 2 cut(s) | 335, 750 |
| TseFI | GTSAC | 3 cut(s) | 326, 652, 862 |
| TseI | GCWGC | 2 cut(s) | 173, 935 |
| Tsp45I | GTSAC | 3 cut(s) | 326, 652, 862 |
| TspDTI | ATGAA | 1 cut(s) | 159 |
| TspGWI | ACGGA | 1 cut(s) | 823 |
| TspRI | CASTG | 2 cut(s) | 335, 750 |
| VpaK11BI | GGWCC | 1 cut(s) | 409 |
| XapI | RAATTY | 3 cut(s) | 692, 833, 896 |
| XhoI | CTCGAG | 1 cut(s) | 480 |
| XmiI | GTMKAC | 1 cut(s) | 99 |
| XmnI | GAANNNNTTC | 1 cut(s) | 617 |
| XspI | CTAG | 4 cut(s) | 158, 542, 564, 641 |