Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 10 - 75 | 1.6e-13 | Domain of unknown function (DUF4283) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 271 |
| AclWI | GGATC | 2 cut(s) | 212, 313 |
| AcoI | YGGCCR | 1 cut(s) | 502 |
| AcsI | RAATTY | 6 cut(s) | 13, 119, 261, 374, 468, 661 |
| AflIII | ACRYGT | 1 cut(s) | 562 |
| AgsI | TTSAA | 7 cut(s) | 70, 124, 395, 406, 431, 488, 603 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 92, 124 |
| Alw26I | GTCTC | 2 cut(s) | 46, 199 |
| AlwI | GGATC | 2 cut(s) | 212, 313 |
| AoxI | GGCC | 1 cut(s) | 502 |
| ApeKI | GCWGC | 1 cut(s) | 443 |
| ApoI | RAATTY | 6 cut(s) | 13, 119, 261, 374, 468, 661 |
| AspS9I | GGNCC | 1 cut(s) | 161 |
| AsuHPI | GGTGA | 1 cut(s) | 599 |
| AvaII | GGWCC | 1 cut(s) | 161 |
| BalI | TGGCCA | 1 cut(s) | 504 |
| BauI | CACGAG | 1 cut(s) | 381 |
| BbvI | GCAGC | 1 cut(s) | 430 |
| BciVI | GTATCC | 1 cut(s) | 634 |
| BclI | TGATCA | 1 cut(s) | 343 |
| BcoDI | GTCTC | 2 cut(s) | 46, 199 |
| BfaI | CTAG | 1 cut(s) | 366 |
| BfmI | CTRYAG | 1 cut(s) | 570 |
| BfuI | GTATCC | 1 cut(s) | 634 |
| BisI | GCNGC | 1 cut(s) | 444 |
| BlsI | GCNGC | 1 cut(s) | 445 |
| Bme18I | GGWCC | 1 cut(s) | 161 |
| BmgT120I | GGNCC | 1 cut(s) | 161 |
| BmsI | GCATC | 1 cut(s) | 538 |
| BpuEI | CTTGAG | 1 cut(s) | 671 |
| BsaBI | GATNNNNATC | 2 cut(s) | 552, 645 |
| BsaI | GGTCTC | 1 cut(s) | 199 |
| BsaJI | CCNNGG | 2 cut(s) | 164, 322 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 318, 348, 600, 630 |
| Bse1I | ACTGG | 2 cut(s) | 505, 543 |
| Bse3DI | GCAATG | 1 cut(s) | 642 |
| Bse8I | GATNNNNATC | 2 cut(s) | 552, 645 |
| BseDI | CCNNGG | 2 cut(s) | 164, 322 |
| BseGI | GGATG | 1 cut(s) | 553 |
| BseJI | GATNNNNATC | 2 cut(s) | 552, 645 |
| BseMI | GCAATG | 1 cut(s) | 642 |
| BseMII | CTCAG | 1 cut(s) | 41 |
| BseNI | ACTGG | 2 cut(s) | 505, 543 |
| BseXI | GCAGC | 1 cut(s) | 430 |
| BseYI | CCCAGC | 1 cut(s) | 176 |
| BsgI | GTGCAG | 1 cut(s) | 401 |
| BshFI | GGCC | 1 cut(s) | 504 |
| BsmAI | GTCTC | 2 cut(s) | 46, 199 |
| BsmBI | CGTCTC | 1 cut(s) | 46 |
| BsnI | GGCC | 1 cut(s) | 504 |
| Bso31I | GGTCTC | 1 cut(s) | 199 |
| Bsp143I | GATC | 3 cut(s) | 217, 318, 343 |
| Bsp19I | CCATGG | 1 cut(s) | 164 |
| BspANI | GGCC | 1 cut(s) | 504 |
| BspCNI | CTCAG | 1 cut(s) | 42 |
| BspPI | GGATC | 2 cut(s) | 212, 313 |
| BspTNI | GGTCTC | 1 cut(s) | 199 |
| BsrDI | GCAATG | 1 cut(s) | 642 |
| BsrI | ACTGG | 2 cut(s) | 505, 543 |
| BssECI | CCNNGG | 2 cut(s) | 164, 322 |
| BssMI | GATC | 3 cut(s) | 217, 318, 343 |
| BssSI | CACGAG | 1 cut(s) | 381 |
| BssT1I | CCWWGG | 2 cut(s) | 164, 322 |
| Bst2BI | CACGAG | 1 cut(s) | 381 |
| BstC8I | GCNNGC | 1 cut(s) | 363 |
| BstDEI | CTNAG | 1 cut(s) | 50 |
| BstDSI | CCRYGG | 1 cut(s) | 164 |
| BstF5I | GGATG | 1 cut(s) | 553 |
| BstKTI | GATC | 3 cut(s) | 220, 321, 346 |
| BstMAI | GTCTC | 2 cut(s) | 46, 199 |
| BstMBI | GATC | 3 cut(s) | 217, 318, 343 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 632 |
| BstNSI | RCATGY | 1 cut(s) | 566 |
| BstSFI | CTRYAG | 1 cut(s) | 570 |
| BstV1I | GCAGC | 1 cut(s) | 430 |
| BstX2I | RGATCY | 1 cut(s) | 318 |
| BstYI | RGATCY | 1 cut(s) | 318 |
| BsuI | GTATCC | 1 cut(s) | 634 |
| BsuRI | GGCC | 1 cut(s) | 504 |
| BtgI | CCRYGG | 1 cut(s) | 164 |
| BtsCI | GGATG | 1 cut(s) | 553 |
| BtsIMutI | CAGTG | 1 cut(s) | 550 |
| Cac8I | GCNNGC | 1 cut(s) | 363 |
| Cfr13I | GGNCC | 1 cut(s) | 161 |
| CseI | GACGC | 1 cut(s) | 63 |
| CviAII | CATG | 5 cut(s) | 37, 139, 146, 165, 563 |
| CviJI | RGCY | 4 cut(s) | 176, 365, 412, 504 |
| CviKI_1 | RGCY | 4 cut(s) | 176, 365, 412, 504 |
| DdeI | CTNAG | 1 cut(s) | 50 |
| DpnI | GATC | 3 cut(s) | 219, 320, 345 |
| DpnII | GATC | 3 cut(s) | 217, 318, 343 |
| EaeI | YGGCCR | 1 cut(s) | 502 |
| Eco130I | CCWWGG | 2 cut(s) | 164, 322 |
| Eco31I | GGTCTC | 1 cut(s) | 199 |
| Eco47I | GGWCC | 1 cut(s) | 161 |
| EcoT14I | CCWWGG | 2 cut(s) | 164, 322 |
| ErhI | CCWWGG | 2 cut(s) | 164, 322 |
| Esp3I | CGTCTC | 1 cut(s) | 46 |
| FaeI | CATG | 5 cut(s) | 40, 142, 149, 168, 566 |
| FatI | CATG | 5 cut(s) | 36, 138, 145, 164, 562 |
| FbaI | TGATCA | 1 cut(s) | 343 |
| FblI | GTMKAC | 1 cut(s) | 271 |
| Fnu4HI | GCNGC | 1 cut(s) | 444 |
| FokI | GGATG | 1 cut(s) | 540 |
| Fsp4HI | GCNGC | 1 cut(s) | 444 |
| FspBI | CTAG | 1 cut(s) | 366 |
| GluI | GCNGC | 1 cut(s) | 444 |
| GsaI | CCCAGC | 1 cut(s) | 180 |
| HaeIII | GGCC | 1 cut(s) | 504 |
| HgaI | GACGC | 1 cut(s) | 63 |
| Hin1II | CATG | 5 cut(s) | 40, 142, 149, 168, 566 |
| HinfI | GANTC | 4 cut(s) | 142, 169, 230, 437 |
| HphI | GGTGA | 1 cut(s) | 599 |
| Hpy166II | GTNNAC | 2 cut(s) | 8, 272 |
| Hpy188I | TCNGA | 2 cut(s) | 51, 580 |
| Hpy188III | TCNNGA | 4 cut(s) | 128, 530, 650, 669 |
| Hpy8I | GTNNAC | 2 cut(s) | 8, 272 |
| HpyAV | CCTTC | 3 cut(s) | 534, 584, 651 |
| HpyCH4IV | ACGT | 1 cut(s) | 297 |
| HpyCH4V | TGCA | 2 cut(s) | 390, 418 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 632 |
| HpyF3I | CTNAG | 1 cut(s) | 50 |
| HpySE526I | ACGT | 1 cut(s) | 297 |
| Hsp92II | CATG | 5 cut(s) | 40, 142, 149, 168, 566 |
| Ksp22I | TGATCA | 1 cut(s) | 343 |
| Kzo9I | GATC | 3 cut(s) | 217, 318, 343 |
| Lsp1109I | GCAGC | 1 cut(s) | 430 |
| LweI | GCATC | 1 cut(s) | 538 |
| MaeI | CTAG | 1 cut(s) | 366 |
| MaeII | ACGT | 1 cut(s) | 297 |
| MaeIII | GTNAC | 1 cut(s) | 616 |
| MalI | GATC | 3 cut(s) | 219, 320, 345 |
| MboI | GATC | 3 cut(s) | 217, 318, 343 |
| MboII | GAAGA | 1 cut(s) | 143 |
| MflI | RGATCY | 1 cut(s) | 318 |
| MlsI | TGGCCA | 1 cut(s) | 504 |
| MluNI | TGGCCA | 1 cut(s) | 504 |
| MnlI | CCTC | 4 cut(s) | 152, 362, 457, 646 |
| Mox20I | TGGCCA | 1 cut(s) | 504 |
| MscI | TGGCCA | 1 cut(s) | 504 |
| MseI | TTAA | 3 cut(s) | 279, 288, 350 |
| MslI | CAYNNNNRTG | 1 cut(s) | 423 |
| Msp20I | TGGCCA | 1 cut(s) | 504 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 632 |
| NcoI | CCATGG | 1 cut(s) | 164 |
| NdeII | GATC | 3 cut(s) | 217, 318, 343 |
| NlaIII | CATG | 5 cut(s) | 40, 142, 149, 168, 566 |
| NspI | RCATGY | 1 cut(s) | 566 |
| PciI | ACATGT | 1 cut(s) | 562 |
| PfeI | GAWTC | 4 cut(s) | 142, 169, 230, 437 |
| PkrI | GCNGC | 1 cut(s) | 445 |
| PscI | ACATGT | 1 cut(s) | 562 |
| PspFI | CCCAGC | 1 cut(s) | 176 |
| PspPI | GGNCC | 1 cut(s) | 161 |
| PsuI | RGATCY | 1 cut(s) | 318 |
| RseI | CAYNNNNRTG | 1 cut(s) | 423 |
| SaqAI | TTAA | 3 cut(s) | 279, 288, 350 |
| SatI | GCNGC | 1 cut(s) | 444 |
| Sau3AI | GATC | 3 cut(s) | 217, 318, 343 |
| Sau96I | GGNCC | 1 cut(s) | 161 |
| SetI | ASST | 5 cut(s) | 29, 49, 277, 300, 595 |
| SfaNI | GCATC | 1 cut(s) | 538 |
| SfcI | CTRYAG | 1 cut(s) | 570 |
| SinI | GGWCC | 1 cut(s) | 161 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 423 |
| SmlI | CTYRAG | 1 cut(s) | 650 |
| SmoI | CTYRAG | 1 cut(s) | 650 |
| SspMI | CTAG | 1 cut(s) | 366 |
| StyI | CCWWGG | 2 cut(s) | 164, 322 |
| TaiI | ACGT | 1 cut(s) | 300 |
| TaqII | GACCGA | 1 cut(s) | 257 |
| TfiI | GAWTC | 4 cut(s) | 142, 169, 230, 437 |
| Tru1I | TTAA | 3 cut(s) | 279, 288, 350 |
| Tru9I | TTAA | 3 cut(s) | 279, 288, 350 |
| TscAI | CASTG | 1 cut(s) | 550 |
| TseI | GCWGC | 1 cut(s) | 443 |
| TspDTI | ATGAA | 5 cut(s) | 25, 100, 155, 239, 243 |
| TspRI | CASTG | 1 cut(s) | 550 |
| VpaK11BI | GGWCC | 1 cut(s) | 161 |
| XapI | RAATTY | 6 cut(s) | 13, 119, 261, 374, 468, 661 |
| XceI | RCATGY | 1 cut(s) | 566 |
| XmiI | GTMKAC | 1 cut(s) | 271 |
| XspI | CTAG | 1 cut(s) | 366 |