Rw0G012180

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00544
OG0000073
Physical Location & Seq
Reverse (-)
144413 .. 146442
2030 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G012180.1

Sequence Viewer

Length: 1611 bp
ATGCTTAACATCGAGCTTGATGGCTTCCCATCAGAGAACTATGTACTCTACCCGACACCTTTTCTGGCAGAGGCTCCTTTCCCGGTGACCAACTGCTCCGTCCTCAGGCTCCTTCCATGTTCTTACAGTCAATTTGAGGATACAGTTGACTTTCTGGATCTGGAATATGGCATCAAACTGCTTGGCATCTTAATTGTTGATGAAGAGCCAGGCTTAGGCGGTGTAAAGGCCAATCTTATGAGAATCTGGAAATCCCTTGGTCAGATCCGAATTATTCGTGTGAAGAGAAACACGTACTGCTTAACTGTTGGTTCAGAGAAACTTGCTAGTAAGCTATTGGACGAAAGACCTTGGGTTGTAAAAGGGCACTGCTTCTCGATTAGTCACTGGCCTAGATACCAATCTATCGATGATATCGAAACACACAGAGCCATCTATTGGATTCAGGCCCATAGGATTCCGCTTGATCAAATTAGTGTTAACAATGGGAGAAAGTTGGGAGGCTTGCTGGGTTCTGTTATTAAAGTGGAGGACCCTCTTATTGCATGGAACCAGGGATATTTGAGAATAAGGGTTGATTTTGATACTAGGAAGCCTTTGGCTACCTTTATGCAGCTACCCAGATCCAATGCCTCAACCTCCAAAATTCGCCTACAGTATGAGAAGCTCATCAGAAAATTCTGTTTCCATTGCGGTCGACTTGGGCATATGGTTATTTCTTGTAAACATCAGGTAAACCCCCTTCTTGCCAAACTGGGGGTGAAGTATGATAACTCTTTAATTGCGGAACTGCCTCAAAGACCGATTTTCACCCAGAAAGAATTTCCACTGGAGTTCCCCTACGCTCCGACAATCGGAATCTTTGGCCGAAACAAGAAGCAGGGAGGAACGAGTCAAATTTTGAATTTGGTAGAGAGAGATACTACTGAAAGGGACAACACCAGTTTGGCTCACTACACAAAGGCTGATAGTGACTACTCTGCTGGCTTAACACAGTCCACAGAGGACATATCACTGTCTCCCTCGATGATACAAAGACCAAGGCTGACAAAACTAACTGTACAACAGAGCCCCAATATGTTTGATCCTGATGCCTATGAGGCAATGTTCAGAAATGGTAGTATTACACGGGCTTTGGATGGGCTGAAACTTCATCATGGGTCATGGGCTGACCTTGAGTGTATACCACCTTGGGCCTTTAAGAATAAGGATGAGTTTTTCAATGCAGACCCCTTTTTTCCAATTCTGTTGTCCCTGGACACTTTTAATCCGGTGAGTCAACCATCATCAGTCAAAATTATGGAACTGGAAGCTTTTAGTGGGAAGACTGTGGCCCCAACATCTATTGCTTCACATTCTATCCTTTCCTCGAACAAACGTAAGAAAAAGCAGGGGAGTGACTCTCAAGATGTGCCCAAGAATACTACAAAGAAGGCTAAAATCACTCACAGCCCAAGGCTTCGTCTTTTAGATAACTCTGGAAGGGGCAGGGGAAGGGGAAGAAGAGGAAGAGGAAGTGGGAAGGGACGAACTGGCAATGGATGGAGCACTGGAACCCCCAAGCAACAGATAATAATTTGGATTCCCAACCTGGATTCCTCAATGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_3 zf-CCHC_4

Protein Analysis

536

Amino Acids

60.39

Weight (kDa)

9.49

Isoelectric Point (pI)

34.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 67 - 131 5.3e-06 Domain of unknown function (DUF4283)
zf-CCHC_4 PF14392 194 - 242 1.8e-09 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 438
AccI GTMKAC 2 cut(s) 697, 1183
AciI CCGC 4 cut(s) 219, 461, 693, 785
AclWI GGATC 4 cut(s) 165, 259, 618, 1079
AcoI YGGCCR 1 cut(s) 865
AcsI RAATTY 5 cut(s) 645, 677, 821, 897, 904
AfaI GTAC 3 cut(s) 45, 296, 1062
AfiI CCNNNNNNNGG 5 cut(s) 105, 215, 438, 756, 854
AflIII ACRYGT 1 cut(s) 291
AgsI TTSAA 2 cut(s) 904, 1222
AjnI CCWGG 4 cut(s) 208, 552, 1254, 1590
AluBI AGCT 5 cut(s) 16, 334, 616, 667, 1313
AluI AGCT 5 cut(s) 16, 334, 616, 667, 1313
Alw21I GWGCWC 1 cut(s) 1550
Alw26I GTCTC 1 cut(s) 1023
AlwI GGATC 4 cut(s) 165, 259, 618, 1079
AoxI GGCC 6 cut(s) 228, 389, 447, 865, 1194, 1332
ApeKI GCWGC 1 cut(s) 613
ApoI RAATTY 5 cut(s) 645, 677, 821, 897, 904
AspS9I GGNCC 4 cut(s) 448, 532, 1194, 1333
AsuC2I CCSGG 1 cut(s) 83
AsuHPI GGTGA 4 cut(s) 97, 772, 802, 1285
AvaII GGWCC 1 cut(s) 532
AxyI CCTNAGG 1 cut(s) 104
BaeGI GKGCMC 2 cut(s) 369, 1416
BanII GRGCYC 1 cut(s) 1073
BarI GAAGNNNNNNTAC 2 cut(s) 726, 758
BbsI GAAGAC 1 cut(s) 1331
Bbv12I GWGCWC 1 cut(s) 1550
BbvI GCAGC 1 cut(s) 625
BccI CCATC 6 cut(s) 14, 37, 440, 1133, 1291, 1536
BciT130I CCWGG 4 cut(s) 210, 554, 1256, 1592
BciVI GTATCC 1 cut(s) 133
BclI TGATCA 1 cut(s) 466
BcnI CCSGG 1 cut(s) 83
BcoDI GTCTC 1 cut(s) 1023
BfaI CTAG 3 cut(s) 327, 393, 588
BfmI CTRYAG 1 cut(s) 653
BfuI GTATCC 1 cut(s) 133
BglI GCCNNNNNGGC 1 cut(s) 1100
BisI GCNGC 1 cut(s) 614
BlsI GCNGC 1 cut(s) 615
Bme1390I CCNGG 5 cut(s) 83, 210, 554, 1256, 1592
Bme18I GGWCC 1 cut(s) 532
BmgT120I GGNCC 4 cut(s) 448, 532, 1194, 1333
BmiI GGNNCC 6 cut(s) 75, 110, 534, 551, 1335, 1555
BmrFI CCNGG 5 cut(s) 83, 210, 554, 1256, 1592
BmrI ACTGGG 1 cut(s) 764
BmsI GCATC 3 cut(s) 180, 195, 1081
BmuI ACTGGG 1 cut(s) 764
BpiI GAAGAC 1 cut(s) 1331
BplI GAGNNNNNCTC 2 cut(s) 1387, 1419
BpmI CTGGAG 1 cut(s) 851
Bpu10I CCTNAGC 1 cut(s) 214
BpuEI CTTGAG 2 cut(s) 1196, 1389
BpuMI CCSGG 1 cut(s) 83
Bsa29I ATCGAT 1 cut(s) 408
BsaAI YACGTR 1 cut(s) 294
BsaBI GATNNNNATC 1 cut(s) 400
BsaJI CCNNGG 7 cut(s) 256, 350, 553, 1040, 1190, 1254, 1454
BsaWI WCCGGW 1 cut(s) 1270
Bsc4I CCNNNNNNNGG 5 cut(s) 105, 215, 438, 756, 854
Bse1I ACTGG 7 cut(s) 392, 759, 834, 942, 1311, 1537, 1555
Bse21I CCTNAGG 1 cut(s) 104
Bse3DI GCAATG 3 cut(s) 688, 1110, 1543
Bse8I GATNNNNATC 1 cut(s) 400
BseBI CCWGG 4 cut(s) 210, 554, 1256, 1592
BseCI ATCGAT 1 cut(s) 408
BseDI CCNNGG 7 cut(s) 256, 350, 553, 1040, 1190, 1254, 1454
BseGI GGATG 3 cut(s) 1144, 1216, 1547
BseJI GATNNNNATC 1 cut(s) 400
BseLI CCNNNNNNNGG 5 cut(s) 105, 215, 438, 756, 854
BseMI GCAATG 3 cut(s) 688, 1110, 1543
BseMII CTCAG 1 cut(s) 118
BseNI ACTGG 7 cut(s) 392, 759, 834, 942, 1311, 1537, 1555
BseSI GKGCMC 2 cut(s) 369, 1416
BseXI GCAGC 1 cut(s) 625
BseYI CCCAGC 1 cut(s) 508
Bsh1285I CGRYCG 1 cut(s) 697
BshFI GGCC 6 cut(s) 230, 391, 449, 867, 1196, 1334
BshVI ATCGAT 1 cut(s) 408
BsiEI CGRYCG 1 cut(s) 697
BsiHKAI GWGCWC 1 cut(s) 1550
BsiSI CCGG 2 cut(s) 83, 1271
BslFI GGGAC 3 cut(s) 947, 1237, 1539
BslI CCNNNNNNNGG 5 cut(s) 105, 215, 438, 756, 854
BsmAI GTCTC 1 cut(s) 1023
BsmFI GGGAC 3 cut(s) 947, 1237, 1539
BsnI GGCC 6 cut(s) 230, 391, 449, 867, 1196, 1334
Bsp1286I GDGCHC 4 cut(s) 369, 1073, 1416, 1550
Bsp1407I TGTACA 1 cut(s) 1060
Bsp143I GATC 5 cut(s) 157, 264, 466, 623, 1084
BspACI CCGC 4 cut(s) 219, 461, 693, 785
BspANI GGCC 6 cut(s) 230, 391, 449, 867, 1196, 1334
BspCNI CTCAG 1 cut(s) 117
BspDI ATCGAT 1 cut(s) 408
BspLI GGNNCC 6 cut(s) 75, 110, 534, 551, 1335, 1555
BspPI GGATC 4 cut(s) 165, 259, 618, 1079
BspQI GCTCTTC 1 cut(s) 198
BsrDI GCAATG 3 cut(s) 688, 1110, 1543
BsrGI TGTACA 1 cut(s) 1060
BsrI ACTGG 7 cut(s) 392, 759, 834, 942, 1311, 1537, 1555
BssECI CCNNGG 7 cut(s) 256, 350, 553, 1040, 1190, 1254, 1454
BssMI GATC 5 cut(s) 157, 264, 466, 623, 1084
BssNAI GTATAC 1 cut(s) 1184
BssT1I CCWWGG 5 cut(s) 256, 350, 1040, 1190, 1454
Bst1107I GTATAC 1 cut(s) 1184
Bst2UI CCWGG 4 cut(s) 210, 554, 1256, 1592
Bst4CI ACNGT 8 cut(s) 128, 145, 307, 657, 996, 1017, 1060, 1330
Bst6I CTCTTC 4 cut(s) 198, 278, 1498, 1504
BstAUI TGTACA 1 cut(s) 1060
BstBAI YACGTR 1 cut(s) 294
BstC8I GCNNGC 2 cut(s) 506, 985
BstDEI CTNAG 2 cut(s) 104, 214
BstEII GGTNACC 1 cut(s) 85
BstF5I GGATG 3 cut(s) 1144, 1216, 1547
BstKTI GATC 5 cut(s) 160, 267, 469, 626, 1087
BstMAI GTCTC 1 cut(s) 1023
BstMBI GATC 5 cut(s) 157, 264, 466, 623, 1084
BstMCI CGRYCG 1 cut(s) 697
BstMWI GCNNNNNNNGC 1 cut(s) 1100
BstNI CCWGG 4 cut(s) 210, 554, 1256, 1592
BstPI GGTNACC 1 cut(s) 85
BstSCI CCNGG 5 cut(s) 81, 208, 552, 1254, 1590
BstSFI CTRYAG 1 cut(s) 653
BstSLI GKGCMC 2 cut(s) 369, 1416
BstV1I GCAGC 1 cut(s) 625
BstV2I GAAGAC 1 cut(s) 1331
BstX2I RGATCY 3 cut(s) 157, 264, 623
BstYI RGATCY 3 cut(s) 157, 264, 623
BstZ17I GTATAC 1 cut(s) 1184
Bsu15I ATCGAT 1 cut(s) 408
Bsu36I CCTNAGG 1 cut(s) 104
BsuI GTATCC 1 cut(s) 133
BsuRI GGCC 6 cut(s) 230, 391, 449, 867, 1196, 1334
BsuTUI ATCGAT 1 cut(s) 408
BtsCI GGATG 3 cut(s) 1144, 1216, 1547
BtsI GCAGTG 1 cut(s) 367
BtsIMutI CAGTG 5 cut(s) 367, 385, 827, 1013, 1548
Cac8I GCNNGC 2 cut(s) 506, 985
Cfr13I GGNCC 4 cut(s) 448, 532, 1194, 1333
ClaI ATCGAT 1 cut(s) 408
Csp6I GTAC 3 cut(s) 44, 295, 1061
CviAII CATG 4 cut(s) 117, 546, 1157, 1164
CviQI GTAC 3 cut(s) 44, 295, 1061
DdeI CTNAG 2 cut(s) 104, 214
DpnI GATC 5 cut(s) 159, 266, 468, 625, 1086
DpnII GATC 5 cut(s) 157, 264, 466, 623, 1084
EaeI YGGCCR 1 cut(s) 865
Eam1104I CTCTTC 4 cut(s) 198, 278, 1498, 1504
EarI CTCTTC 4 cut(s) 198, 278, 1498, 1504
Eco130I CCWWGG 5 cut(s) 256, 350, 1040, 1190, 1454
Eco24I GRGCYC 1 cut(s) 1073
Eco32I GATATC 1 cut(s) 415
Eco47I GGWCC 1 cut(s) 532
Eco81I CCTNAGG 1 cut(s) 104
Eco91I GGTNACC 1 cut(s) 85
EcoO109I RGGNCCY 1 cut(s) 532
EcoO65I GGTNACC 1 cut(s) 85
EcoRII CCWGG 4 cut(s) 208, 552, 1254, 1590
EcoRV GATATC 1 cut(s) 415
EcoT14I CCWWGG 5 cut(s) 256, 350, 1040, 1190, 1454
EcoT38I GRGCYC 1 cut(s) 1073
ErhI CCWWGG 5 cut(s) 256, 350, 1040, 1190, 1454
FaeI CATG 4 cut(s) 120, 549, 1160, 1167
FaqI GGGAC 3 cut(s) 947, 1237, 1539
FatI CATG 4 cut(s) 116, 545, 1156, 1163
FauNDI CATATG 1 cut(s) 708
FbaI TGATCA 1 cut(s) 466
FblI GTMKAC 2 cut(s) 697, 1183
Fnu4HI GCNGC 1 cut(s) 614
FokI GGATG 3 cut(s) 1151, 1223, 1554
FriOI GRGCYC 1 cut(s) 1073
Fsp4HI GCNGC 1 cut(s) 614
FspBI CTAG 3 cut(s) 327, 393, 588
GluI GCNGC 1 cut(s) 614
GsaI CCCAGC 1 cut(s) 512
GsuI CTGGAG 1 cut(s) 851
HaeIII GGCC 6 cut(s) 230, 391, 449, 867, 1196, 1334
HapII CCGG 2 cut(s) 83, 1271
Hin1II CATG 4 cut(s) 120, 549, 1160, 1167
HincII GTYRAC 4 cut(s) 148, 481, 698, 1280
HindII GTYRAC 4 cut(s) 148, 481, 698, 1280
HindIII AAGCTT 1 cut(s) 1311
HinfI GANTC 9 cut(s) 243, 442, 457, 858, 892, 1276, 1400, 1582, 1595
HpaI GTTAAC 1 cut(s) 481
HpaII CCGG 2 cut(s) 83, 1271
HphI GGTGA 4 cut(s) 97, 772, 802, 1285
Hpy166II GTNNAC 8 cut(s) 148, 481, 698, 725, 736, 999, 1184, 1280
Hpy188I TCNGA 8 cut(s) 34, 264, 269, 316, 674, 849, 857, 1112
Hpy188III TCNNGA 7 cut(s) 155, 161, 247, 376, 1088, 1406, 1479
Hpy8I GTNNAC 8 cut(s) 148, 481, 698, 725, 736, 999, 1184, 1280
HpyAV CCTTC 6 cut(s) 122, 752, 1426, 1476, 1488, 1516
HpyCH4III ACNGT 8 cut(s) 128, 145, 307, 657, 996, 1017, 1060, 1330
HpyCH4IV ACGT 2 cut(s) 293, 1378
HpyCH4V TGCA 3 cut(s) 545, 613, 1226
HpyF10VI GCNNNNNNNGC 1 cut(s) 1100
HpyF3I CTNAG 2 cut(s) 104, 214
HpySE526I ACGT 2 cut(s) 293, 1378
Hsp92II CATG 4 cut(s) 120, 549, 1160, 1167
Ksp22I TGATCA 1 cut(s) 466
KspAI GTTAAC 1 cut(s) 481
Kzo9I GATC 5 cut(s) 157, 264, 466, 623, 1084
LguI GCTCTTC 1 cut(s) 198
LmnI GCTCC 5 cut(s) 79, 101, 114, 850, 1545
Lsp1109I GCAGC 1 cut(s) 625
LweI GCATC 3 cut(s) 180, 195, 1081
MaeI CTAG 3 cut(s) 327, 393, 588
MaeII ACGT 2 cut(s) 293, 1378
MaeIII GTNAC 4 cut(s) 85, 383, 971, 1397
MalI GATC 5 cut(s) 159, 266, 468, 625, 1086
MboI GATC 5 cut(s) 157, 264, 466, 623, 1084
MboII GAAGA 6 cut(s) 215, 295, 1336, 1512, 1515, 1521
MflI RGATCY 3 cut(s) 157, 264, 623
MhlI GDGCHC 4 cut(s) 369, 1073, 1416, 1550
MlyI GAGTC 3 cut(s) 901, 1285, 1394
MmeI TCCRAC 1 cut(s) 872
MseI TTAA 9 cut(s) 6, 191, 302, 480, 522, 779, 989, 1200, 1266
MspI CCGG 2 cut(s) 83, 1271
MspR9I CCNGG 5 cut(s) 83, 210, 554, 1256, 1592
MvaI CCWGG 4 cut(s) 210, 554, 1256, 1592
MwoI GCNNNNNNNGC 1 cut(s) 1100
NciI CCSGG 1 cut(s) 83
NdeI CATATG 1 cut(s) 708
NdeII GATC 5 cut(s) 157, 264, 466, 623, 1084
NlaIII CATG 4 cut(s) 120, 549, 1160, 1167
NlaIV GGNNCC 6 cut(s) 75, 110, 534, 551, 1335, 1555
NmuCI GTSAC 4 cut(s) 85, 383, 971, 1397
PciSI GCTCTTC 1 cut(s) 198
PcsI WCGNNNNNNNCGW 1 cut(s) 414
PfeI GAWTC 6 cut(s) 243, 442, 457, 858, 1582, 1595
PflMI CCANNNNNTGG 1 cut(s) 438
PkrI GCNGC 1 cut(s) 615
PleI GAGTC 3 cut(s) 900, 1284, 1394
PpsI GAGTC 3 cut(s) 900, 1284, 1394
Ppu21I YACGTR 1 cut(s) 294
PpuMI RGGWCCY 1 cut(s) 532
Psp5II RGGWCCY 1 cut(s) 532
Psp6I CCWGG 4 cut(s) 208, 552, 1254, 1590
PspEI GGTNACC 1 cut(s) 85
PspFI CCCAGC 1 cut(s) 508
PspGI CCWGG 4 cut(s) 208, 552, 1254, 1590
PspN4I GGNNCC 6 cut(s) 75, 110, 534, 551, 1335, 1555
PspPI GGNCC 4 cut(s) 448, 532, 1194, 1333
PspPPI RGGWCCY 1 cut(s) 532
PsuI RGATCY 3 cut(s) 157, 264, 623
RsaI GTAC 3 cut(s) 45, 296, 1062
RsaNI GTAC 3 cut(s) 44, 295, 1061
SalI GTCGAC 1 cut(s) 696
SapI GCTCTTC 1 cut(s) 198
SaqAI TTAA 9 cut(s) 6, 191, 302, 480, 522, 779, 989, 1200, 1266
SatI GCNGC 1 cut(s) 614
Sau3AI GATC 5 cut(s) 157, 264, 466, 623, 1084
Sau96I GGNCC 4 cut(s) 448, 532, 1194, 1333
SchI GAGTC 3 cut(s) 901, 1285, 1394
ScrFI CCNGG 5 cut(s) 83, 210, 554, 1256, 1592
SduI GDGCHC 4 cut(s) 369, 1073, 1416, 1550
SfaNI GCATC 3 cut(s) 180, 195, 1081
SfcI CTRYAG 1 cut(s) 653
SinI GGWCC 1 cut(s) 532
SmlI CTYRAG 2 cut(s) 1175, 1404
SmoI CTYRAG 2 cut(s) 1175, 1404
SsiI CCGC 4 cut(s) 219, 461, 693, 785
SspMI CTAG 3 cut(s) 327, 393, 588
StyD4I CCNGG 5 cut(s) 81, 208, 552, 1254, 1590
StyI CCWWGG 5 cut(s) 256, 350, 1040, 1190, 1454
TaaI ACNGT 8 cut(s) 128, 145, 307, 657, 996, 1017, 1060, 1330
TaiI ACGT 2 cut(s) 296, 1381
TaqI TCGA 7 cut(s) 12, 377, 408, 417, 697, 1025, 1370
TaqII GACCGA 1 cut(s) 817
TatI WGTACW 2 cut(s) 43, 1060
TfiI GAWTC 6 cut(s) 243, 442, 457, 858, 1582, 1595
Tru1I TTAA 9 cut(s) 6, 191, 302, 480, 522, 779, 989, 1200, 1266
Tru9I TTAA 9 cut(s) 6, 191, 302, 480, 522, 779, 989, 1200, 1266
TscAI CASTG 5 cut(s) 374, 392, 834, 1020, 1555
TseFI GTSAC 4 cut(s) 85, 383, 971, 1397
TseI GCWGC 1 cut(s) 613
Tsp45I GTSAC 4 cut(s) 85, 383, 971, 1397
TspDTI ATGAA 2 cut(s) 216, 1142
TspGWI ACGGA 1 cut(s) 88
TspRI CASTG 5 cut(s) 374, 392, 834, 1020, 1555
Van91I CCANNNNNTGG 1 cut(s) 438
VpaK11BI GGWCC 1 cut(s) 532
XapI RAATTY 5 cut(s) 645, 677, 821, 897, 904
XmiI GTMKAC 2 cut(s) 697, 1183
XspI CTAG 3 cut(s) 327, 393, 588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.