Rh5CG004400

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000073
Physical Location & Seq
Reverse (-)
306828 .. 308177
1350 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG004400.1

Sequence Viewer

Length: 1350 bp
ATGGAGTACTCACCACCAAAGTCCCCTATTTCTACCTTATCTCCGCCCCCATCACCCAAAAAGACCCCTACTTCTACCTTCTCTCCGCCACCATCTCCCCACAAATCCTTCCCAGATAATCCTCCGATTCATACCTCAGATGCATTTCCTGAGGGTGAACTCTTTATCCCGCTACCTCCACATACTCAACCTACTCAAGGCCGTGATACTCAGCTTGTTGGTGCGATCATAGTTGATCGTACCCTCCATGCCCCTTCAGTCATTCGGATTCTTACTACTGCTTGGTCTGAGATTGGGCGTTTTCGGGTGGACTTGCTGGGCGGTACCTCTATCTTTTCTATCACAGCTCCCTCTGAGGCGGCAGCTGATCAGGTGCTTGAGCGTGGTCCGTGGTCAGTTATGGGTAGCAGCATGGCTATTCATCCTTGGCTTATGACCAGCAGATTGGAGGATATCCCTATCCACCTCATTACTTTTTGGATTCAGATTCATGGGCTACAGAGGGGTCACATGACTGAAGAAATTGCAAATATGATCGGTGCTCAAGTGGGGACAGTTCTCTCTGTTGATGATCCTAACTCCCCGTCTGGCAATCCTGGCTATCTCCATGTTAGGGTTCAGGTAGACTCTCGGGCCCCTCTTTCTCCTGGTTTCTGGTTTAGCAACAGTGACACTGAAGCAACTTGGGCAGAAATTCGGTACGAGAGATTGTCCGATTTCTGTTATCGCTGTGGTCGTTTGGGCCATACCATCAGTACTTGTACTTTCAGGAGACATGCATCAGCTGATCACTTGGGCCCTTGGATGGCAGTTCCTACTCCTCGCCGTCTTCCTCCTGACAATCAACAAAACTGGGATCGCTTCCCTCATCAGGCTTTTGAGCACAGACAAAGTAGGTACGTTGAACGCAGGTATCAGCAGAATGGCACTTATGTTTCCCGTCCGAGGAGCACTATGCCGGTTACTACAGCTGGGTACGGTTCCTTCTCCGGCAACCCTATACCGCTTACGGGTGCCCTAATTCTTGCCCATCCACAGCAAGGCAGGTGGCAGCCAGCTGTCCTTTCCACATATGCTACATCTTCAGAAGCTGGTCCTTCTGGAGCGAATACCCTCAACAAAGGTAAAGCCAAATTTGATGACTGGGTAGTTCCATCTCCTACTATGTCGCCACCTCATCCAATTTCTCCTGACGTGGAGGACATGCAACTGGCAGTTTCCCTTTCCTTAGCTGAGCTGGCTGACACACCCACAACACATCATCGTCTCACTCCACCGCCATTGGACCCATATCTTCAGATGGGCTTTCAGTCTGACCCATCAGTCTTGCAAGCTATGTTAGCTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4 zf-RING_2

Protein Analysis

449

Amino Acids

49.47

Weight (kDa)

6.43

Isoelectric Point (pI)

50.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 73 - 148 1.2e-08 Domain of unknown function (DUF4283)
zf-CCHC_4 PF14392 224 - 255 2.5e-08 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1035
AasI GACNNNNNNGTC 1 cut(s) 1322
Acc36I ACCTGC 2 cut(s) 900, 1035
Acc65I GGTACC 1 cut(s) 323
AccB1I GGYRCC 2 cut(s) 323, 1013
AccI GTMKAC 1 cut(s) 624
AciI CCGC 7 cut(s) 44, 86, 170, 321, 359, 1004, 1277
AclWI GGATC 2 cut(s) 566, 864
AcsI RAATTY 2 cut(s) 693, 1133
AcuI CTGAAG 5 cut(s) 240, 537, 696, 1068, 1280
AfaI GTAC 8 cut(s) 8, 241, 325, 701, 757, 763, 899, 977
AfiI CCNNNNNNNGG 7 cut(s) 197, 613, 805, 871, 945, 1010, 1040
AgsI TTSAA 1 cut(s) 905
AjiI CACGTC 1 cut(s) 1195
AjnI CCWGG 2 cut(s) 595, 646
AloI GAACNNNNNNTCC 2 cut(s) 150, 182
Alw21I GWGCWC 3 cut(s) 544, 885, 953
Alw26I GTCTC 2 cut(s) 766, 1271
AlwI GGATC 2 cut(s) 566, 864
AlwNI CAGNNNCTG 1 cut(s) 1091
Ama87I CYCGRG 1 cut(s) 630
AoxI GGCC 4 cut(s) 199, 633, 742, 796
ApaI GGGCCC 2 cut(s) 637, 800
ApeKI GCWGC 3 cut(s) 362, 408, 1051
ApoI RAATTY 2 cut(s) 693, 1133
Asp718I GGTACC 1 cut(s) 323
AspS9I GGNCC 8 cut(s) 386, 633, 634, 742, 796, 797, 1094, 1285
AsuHPI GGTGA 3 cut(s) 3, 45, 167
AvaI CYCGRG 1 cut(s) 630
AvaII GGWCC 3 cut(s) 386, 1094, 1285
AxyI CCTNAGG 1 cut(s) 150
BaeGI GKGCMC 3 cut(s) 637, 800, 1018
BaeI ACNNNNGTAYC 2 cut(s) 896, 929
BanI GGYRCC 2 cut(s) 323, 1013
BanII GRGCYC 2 cut(s) 637, 800
BarI GAAGNNNNNNTAC 2 cut(s) 968, 1000
BbsI GAAGAC 1 cut(s) 821
Bbv12I GWGCWC 3 cut(s) 544, 885, 953
BbvI GCAGC 3 cut(s) 374, 420, 1063
BccI CCATC 8 cut(s) 58, 100, 758, 799, 1038, 1162, 1294, 1327
BceAI ACGGC 2 cut(s) 186, 810
BciT130I CCWGG 2 cut(s) 597, 648
BclI TGATCA 2 cut(s) 367, 787
BcoDI GTCTC 2 cut(s) 766, 1271
BfmI CTRYAG 2 cut(s) 497, 966
BfuAI ACCTGC 2 cut(s) 900, 1035
BisI GCNGC 4 cut(s) 360, 363, 409, 1052
BlpI GCTNAGC 1 cut(s) 1233
BlsI GCNGC 4 cut(s) 361, 364, 410, 1053
BmcAI AGTACT 2 cut(s) 8, 757
Bme1390I CCNGG 2 cut(s) 597, 648
Bme18I GGWCC 3 cut(s) 386, 1094, 1285
BmeT110I CYCGRG 1 cut(s) 630
BmgBI CACGTC 1 cut(s) 1195
BmgT120I GGNCC 8 cut(s) 386, 633, 634, 742, 796, 797, 1094, 1285
BmiI GGNNCC 7 cut(s) 325, 635, 636, 798, 982, 1015, 1287
BmrFI CCNGG 2 cut(s) 597, 648
BmrI ACTGGG 2 cut(s) 862, 1153
BmsI GCATC 2 cut(s) 130, 788
BmuI ACTGGG 2 cut(s) 862, 1153
BpiI GAAGAC 1 cut(s) 821
BpmI CTGGAG 1 cut(s) 1122
Bpu10I CCTNAGC 1 cut(s) 1228
Bpu1102I GCTNAGC 1 cut(s) 1233
BpuEI CTTGAG 3 cut(s) 180, 398, 528
BsaJI CCNNGG 4 cut(s) 389, 425, 800, 944
BsaXI ACNNNNNCTCC 4 cut(s) 25, 55, 67, 97
Bsc4I CCNNNNNNNGG 7 cut(s) 197, 613, 805, 871, 945, 1010, 1040
Bse118I RCCGGY 1 cut(s) 958
Bse1I ACTGG 3 cut(s) 857, 1148, 1215
Bse21I CCTNAGG 1 cut(s) 150
BseBI CCWGG 2 cut(s) 597, 648
BseDI CCNNGG 4 cut(s) 389, 425, 800, 944
BseGI GGATG 4 cut(s) 421, 810, 1030, 1177
BseLI CCNNNNNNNGG 7 cut(s) 197, 613, 805, 871, 945, 1010, 1040
BseMII CTCAG 6 cut(s) 141, 150, 224, 279, 345, 1224
BseNI ACTGG 3 cut(s) 857, 1148, 1215
BseRI GAGGAG 2 cut(s) 810, 961
BseSI GKGCMC 3 cut(s) 637, 800, 1018
BseXI GCAGC 3 cut(s) 374, 420, 1063
BseYI CCCAGC 2 cut(s) 316, 971
BshFI GGCC 4 cut(s) 201, 635, 744, 798
BshNI GGYRCC 2 cut(s) 323, 1013
BsiHKAI GWGCWC 3 cut(s) 544, 885, 953
BsiHKCI CYCGRG 1 cut(s) 630
BsiSI CCGG 2 cut(s) 959, 990
BslFI GGGAC 2 cut(s) 7, 565
BslI CCNNNNNNNGG 7 cut(s) 197, 613, 805, 871, 945, 1010, 1040
BsmAI GTCTC 2 cut(s) 766, 1271
BsmBI CGTCTC 1 cut(s) 1271
BsmFI GGGAC 2 cut(s) 7, 565
BsnI GGCC 4 cut(s) 201, 635, 744, 798
BsoBI CYCGRG 1 cut(s) 630
Bsp120I GGGCCC 2 cut(s) 633, 796
Bsp1286I GDGCHC 6 cut(s) 544, 637, 800, 885, 953, 1018
Bsp143I GATC 7 cut(s) 225, 235, 367, 534, 571, 787, 856
Bsp1720I GCTNAGC 1 cut(s) 1233
BspACI CCGC 7 cut(s) 44, 86, 170, 321, 359, 1004, 1277
BspANI GGCC 4 cut(s) 201, 635, 744, 798
BspCNI CTCAG 6 cut(s) 142, 149, 223, 280, 346, 1225
BspLI GGNNCC 7 cut(s) 325, 635, 636, 798, 982, 1015, 1287
BspMI ACCTGC 2 cut(s) 900, 1035
BspPI GGATC 2 cut(s) 566, 864
BspT107I GGYRCC 2 cut(s) 323, 1013
BsrFI RCCGGY 1 cut(s) 958
BsrI ACTGG 3 cut(s) 857, 1148, 1215
BssAI RCCGGY 1 cut(s) 958
BssECI CCNNGG 4 cut(s) 389, 425, 800, 944
BssMI GATC 7 cut(s) 225, 235, 367, 534, 571, 787, 856
BssT1I CCWWGG 2 cut(s) 425, 800
Bst2UI CCWGG 2 cut(s) 597, 648
Bst4CI ACNGT 3 cut(s) 556, 668, 980
BstC8I GCNNGC 3 cut(s) 1056, 1239, 1332
BstDEI CTNAG 7 cut(s) 136, 150, 210, 288, 354, 1228, 1233
BstDSI CCRYGG 1 cut(s) 389
BstENI CCTNNNNNAGG 1 cut(s) 195
BstF5I GGATG 4 cut(s) 421, 810, 1030, 1177
BstKTI GATC 7 cut(s) 228, 238, 370, 537, 574, 790, 859
BstMAI GTCTC 2 cut(s) 766, 1271
BstMBI GATC 7 cut(s) 225, 235, 367, 534, 571, 787, 856
BstMWI GCNNNNNNNGC 4 cut(s) 597, 686, 1238, 1340
BstNI CCWGG 2 cut(s) 597, 648
BstNSI RCATGY 2 cut(s) 779, 1207
BstSCI CCNGG 2 cut(s) 595, 646
BstSFI CTRYAG 2 cut(s) 497, 966
BstSLI GKGCMC 3 cut(s) 637, 800, 1018
BstV1I GCAGC 3 cut(s) 374, 420, 1063
BstV2I GAAGAC 1 cut(s) 821
BstXI CCANNNNNNTGG 1 cut(s) 445
Bsu36I CCTNAGG 1 cut(s) 150
BsuRI GGCC 4 cut(s) 201, 635, 744, 798
BtgI CCRYGG 1 cut(s) 389
BtrI CACGTC 1 cut(s) 1195
BtsCI GGATG 4 cut(s) 421, 810, 1030, 1177
BtsIMutI CAGTG 2 cut(s) 672, 673
BveI ACCTGC 2 cut(s) 900, 1035
Cac8I GCNNGC 3 cut(s) 1056, 1239, 1332
CaiI CAGNNNCTG 1 cut(s) 1091
Cfr10I RCCGGY 1 cut(s) 958
Cfr13I GGNCC 8 cut(s) 386, 633, 634, 742, 796, 797, 1094, 1285
Csp6I GTAC 8 cut(s) 7, 240, 324, 700, 756, 762, 898, 976
CspCI CAANNNNNGTGG 4 cut(s) 1028, 1063, 1263, 1298
CviAII CATG 7 cut(s) 248, 412, 491, 511, 608, 776, 1204
CviQI GTAC 8 cut(s) 7, 240, 324, 700, 756, 762, 898, 976
DdeI CTNAG 7 cut(s) 136, 150, 210, 288, 354, 1228, 1233
DpnI GATC 7 cut(s) 227, 237, 369, 536, 573, 789, 858
DpnII GATC 7 cut(s) 225, 235, 367, 534, 571, 787, 856
DrdI GACNNNNNNGTC 1 cut(s) 1322
DseDI GACNNNNNNGTC 1 cut(s) 1322
EciI GGCGGA 2 cut(s) 33, 75
Eco130I CCWWGG 2 cut(s) 425, 800
Eco24I GRGCYC 2 cut(s) 637, 800
Eco32I GATATC 1 cut(s) 454
Eco47I GGWCC 3 cut(s) 386, 1094, 1285
Eco57I CTGAAG 5 cut(s) 240, 537, 696, 1068, 1280
Eco81I CCTNAGG 1 cut(s) 150
Eco88I CYCGRG 1 cut(s) 630
EcoNI CCTNNNNNAGG 1 cut(s) 195
EcoO109I RGGNCCY 2 cut(s) 634, 797
EcoRII CCWGG 2 cut(s) 595, 646
EcoRV GATATC 1 cut(s) 454
EcoT14I CCWWGG 2 cut(s) 425, 800
EcoT22I ATGCAT 2 cut(s) 145, 781
EcoT38I GRGCYC 2 cut(s) 637, 800
ErhI CCWWGG 2 cut(s) 425, 800
Esp3I CGTCTC 1 cut(s) 1271
FaeI CATG 7 cut(s) 251, 415, 494, 514, 611, 779, 1207
FaqI GGGAC 2 cut(s) 7, 565
FatI CATG 7 cut(s) 247, 411, 490, 510, 607, 775, 1203
FauI CCCGC 1 cut(s) 177
FauNDI CATATG 1 cut(s) 1072
FbaI TGATCA 2 cut(s) 367, 787
FblI GTMKAC 1 cut(s) 624
Fnu4HI GCNGC 4 cut(s) 360, 363, 409, 1052
FokI GGATG 4 cut(s) 408, 817, 1017, 1164
FriOI GRGCYC 2 cut(s) 637, 800
Fsp4HI GCNGC 4 cut(s) 360, 363, 409, 1052
GluI GCNGC 4 cut(s) 360, 363, 409, 1052
GsaI CCCAGC 2 cut(s) 320, 975
GsuI CTGGAG 1 cut(s) 1122
HaeIII GGCC 4 cut(s) 201, 635, 744, 798
HapII CCGG 2 cut(s) 959, 990
Hin1II CATG 7 cut(s) 251, 415, 494, 514, 611, 779, 1207
HinfI GANTC 5 cut(s) 127, 268, 481, 487, 626
HpaII CCGG 2 cut(s) 959, 990
HphI GGTGA 3 cut(s) 3, 45, 167
Hpy166II GTNNAC 3 cut(s) 158, 310, 625
Hpy188III TCNNGA 5 cut(s) 149, 769, 836, 1101, 1190
Hpy8I GTNNAC 3 cut(s) 158, 310, 625
HpyAV CCTTC 5 cut(s) 88, 118, 264, 994, 1107
HpyCH4III ACNGT 3 cut(s) 556, 668, 980
HpyCH4IV ACGT 2 cut(s) 900, 1194
HpyCH4V TGCA 5 cut(s) 143, 527, 779, 1207, 1330
HpyF10VI GCNNNNNNNGC 4 cut(s) 597, 686, 1238, 1340
HpyF3I CTNAG 7 cut(s) 136, 150, 210, 288, 354, 1228, 1233
HpySE526I ACGT 2 cut(s) 900, 1194
Hsp92II CATG 7 cut(s) 251, 415, 494, 514, 611, 779, 1207
KpnI GGTACC 1 cut(s) 327
Ksp22I TGATCA 2 cut(s) 367, 787
Kzo9I GATC 7 cut(s) 225, 235, 367, 534, 571, 787, 856
LmnI GCTCC 3 cut(s) 352, 948, 1103
Lsp1109I GCAGC 3 cut(s) 374, 420, 1063
LweI GCATC 2 cut(s) 130, 788
MaeII ACGT 2 cut(s) 900, 1194
MaeIII GTNAC 3 cut(s) 506, 668, 961
MalI GATC 7 cut(s) 227, 237, 369, 536, 573, 789, 858
MboI GATC 7 cut(s) 225, 235, 367, 534, 571, 787, 856
MboII GAAGA 4 cut(s) 530, 821, 1074, 1286
MhlI GDGCHC 6 cut(s) 544, 637, 800, 885, 953, 1018
MluCI AATT 5 cut(s) 522, 693, 1020, 1133, 1182
MlyI GAGTC 1 cut(s) 620
Mph1103I ATGCAT 2 cut(s) 145, 781
MspA1I CMGCKG 4 cut(s) 365, 785, 971, 1058
MspI CCGG 2 cut(s) 959, 990
MspR9I CCNGG 2 cut(s) 597, 648
MvaI CCWGG 2 cut(s) 597, 648
MwoI GCNNNNNNNGC 4 cut(s) 597, 686, 1238, 1340
NdeI CATATG 1 cut(s) 1072
NdeII GATC 7 cut(s) 225, 235, 367, 534, 571, 787, 856
NlaIII CATG 7 cut(s) 251, 415, 494, 514, 611, 779, 1207
NlaIV GGNNCC 7 cut(s) 325, 635, 636, 798, 982, 1015, 1287
NmuCI GTSAC 2 cut(s) 506, 668
NsiI ATGCAT 2 cut(s) 145, 781
NspI RCATGY 2 cut(s) 779, 1207
PaqCI CACCTGC 1 cut(s) 1035
PcsI WCGNNNNNNNCGW 1 cut(s) 733
PfeI GAWTC 4 cut(s) 127, 268, 481, 487
PkrI GCNGC 4 cut(s) 361, 364, 410, 1053
PleI GAGTC 1 cut(s) 620
PpsI GAGTC 1 cut(s) 620
Psp6I CCWGG 2 cut(s) 595, 646
PspFI CCCAGC 2 cut(s) 316, 971
PspGI CCWGG 2 cut(s) 595, 646
PspN4I GGNNCC 7 cut(s) 325, 635, 636, 798, 982, 1015, 1287
PspOMI GGGCCC 2 cut(s) 633, 796
PspPI GGNCC 8 cut(s) 386, 633, 634, 742, 796, 797, 1094, 1285
PstNI CAGNNNCTG 1 cut(s) 1091
PvuII CAGCTG 4 cut(s) 365, 785, 971, 1058
RsaI GTAC 8 cut(s) 8, 241, 325, 701, 757, 763, 899, 977
RsaNI GTAC 8 cut(s) 7, 240, 324, 700, 756, 762, 898, 976
SatI GCNGC 4 cut(s) 360, 363, 409, 1052
Sau3AI GATC 7 cut(s) 225, 235, 367, 534, 571, 787, 856
Sau96I GGNCC 8 cut(s) 386, 633, 634, 742, 796, 797, 1094, 1285
ScaI AGTACT 2 cut(s) 8, 757
SchI GAGTC 1 cut(s) 620
ScrFI CCNGG 2 cut(s) 597, 648
SduI GDGCHC 6 cut(s) 544, 637, 800, 885, 953, 1018
SfaNI GCATC 2 cut(s) 130, 788
SfcI CTRYAG 2 cut(s) 497, 966
SinI GGWCC 3 cut(s) 386, 1094, 1285
SmlI CTYRAG 3 cut(s) 195, 377, 543
SmoI CTYRAG 3 cut(s) 195, 377, 543
Sse9I AATT 5 cut(s) 522, 693, 1020, 1133, 1182
SsiI CCGC 7 cut(s) 44, 86, 170, 321, 359, 1004, 1277
StyD4I CCNGG 2 cut(s) 595, 646
StyI CCWWGG 2 cut(s) 425, 800
TaaI ACNGT 3 cut(s) 556, 668, 980
TaiI ACGT 2 cut(s) 903, 1197
TasI AATT 5 cut(s) 522, 693, 1020, 1133, 1182
TatI WGTACW 3 cut(s) 6, 755, 761
TauI GCSGC 1 cut(s) 362
TfiI GAWTC 4 cut(s) 127, 268, 481, 487
TscAI CASTG 2 cut(s) 673, 679
TseFI GTSAC 2 cut(s) 506, 668
TseI GCWGC 3 cut(s) 362, 408, 1051
Tsp45I GTSAC 2 cut(s) 506, 668
TspDTI ATGAA 3 cut(s) 119, 410, 479
TspGWI ACGGA 1 cut(s) 378
TspRI CASTG 2 cut(s) 673, 679
VpaK11BI GGWCC 3 cut(s) 386, 1094, 1285
XagI CCTNNNNNAGG 1 cut(s) 195
XapI RAATTY 2 cut(s) 693, 1133
XceI RCATGY 2 cut(s) 779, 1207
XmiI GTMKAC 1 cut(s) 624
ZrmI AGTACT 2 cut(s) 8, 757
Zsp2I ATGCAT 2 cut(s) 145, 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.