Rmu_sc0009191.1_g000017

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009191.1
OG0000073
Physical Location & Seq
Reverse (-)
47668 .. 51148
3481 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009191.1_g000017.1.cds

Sequence Viewer

Length: 2337 bp
atgaagtcccatgaccaccttgcatcacgtttggagaacacctgttgcctcgatgaggttgagaacgaggtgtcgttgtttggtgccctgatcacagatgtggtacccaatattgcaggcataaaaggctccttacgtacttcctggaaagatattggcaatttcaaaattgcacacttacaccgcaacattttctccatcaaagtatcacctgagggggagactttactcctagagggtggtccatggcatgttgacaatatgaggttcaatgtggtcccgatttctggcctgaccagagtaaagatgaactcaaagaatgccatgatgattggctcagaaatagggaaagttttagaagttgaagacccagttaaggtggacgccaccctcagaggctgccttagggttaagtgcggaaaactagggcaccatcttgacgtctgcaagaattaccggctgattaacccggaagatggcgagcccgaaaacatctggtacagaccatggatgaagagaaaatctctaacaactcggcagcagtcctggcttgaccgtcaggcaagagttcatcggaaaaagccaaaagcgaagaggttcacggactggctgaatgagtccccatatggagcacaggctggccctagtcgtcagcatcatgatgcaagccctgagacaatgaggaaccaggttggaaggcaaatcctcctgatttccgagccggacgatgagggctcctcaccacatatttcaaatccctctgactcgcccgtgatgcacctctcctcaagttactctcaaacctctgtccttcttgagaactatgctgctgggtccaaggtaacccctttccctagcccccattggctgaagcttgctgtcaccacttctaagacacataaacagcggacaaaaaagaccttctcccagttggcaatttccaacttactttcgaggtccaatccaccccaaaatactcttgctccaaatagctcgaattctattgtcctatcccgtgacccggtgaaggaagaggaaatctttgccaactttatccttgtcccagcccattgttttgagaatccacactggaaaagaggtccaccacgtggcagaggtaggggaacaagaggtggtaggtcaaatggtgcttctcctggaggaggaagaggtgattcgggtagtggtagaggcccaggaaggaggaggtacaaatgtttcccaagcacagagcttaatttgggtgagtttcaggaaattactgttgagatccttgaggactcttcagagaactggcaaggtctgggacgagccttgacagtccagaaactgggggagcttattcgctcccattcccggtccatggtgttcctttgtgaaccgaagcaatccagcttcagagtgaataatttgcgtaggcaattgaagtatttcaagggtattacaattgatccctcaattaattcagcgggaggcgtggctctttggtggagactggaagtggatgtgaaggttctttacaaggacaagaacattattgacactctaatcagggattttaatgaaattgtttctaatgatgaaaaagaagggggtgttccatggcactggaacatggtgcgtttcttgaaggatttcatggacagaaatgctttgtttgatctcaatttttgtggtcccaaactgacttgggaaaacaggagagataatgctgaagaagttattcgggaaaggctcgaccggcctcgtattaagagaggccccaagattttccggtttgaggtagcttgggcggatgacccggagtgtgaggaagtcttaaaaagccactgtagggctgttattgaggctctgaactgggagctaagatgtatccaagagggagaagtgtccactgcatctaaattgggtgagagtgagattctgactgatttagaggttgcctggaagttagaagagagcttttggaagcagagatctagaattagctggttactggagggggacagaaacacaatgtttttccatctcactaccctcaacagaagacaaagaaatagaattagtagtctctgcctaaacgagaacctttggattagtgaagagcctttgattaccggggcattcaccaacttttttgaaggcctttactcttcttcaagtctgaggagctggggtgattcccttgaaaaaattaagtgcttagtctctcttgagcagaactcggctcttactatgccattctcactggaggaaattcatcgagcggtgaaacagttgggaaacctcaaagccccagggccggatggcttcccaggccttgtctacagtcaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

778

Amino Acids

88.35

Weight (kDa)

8.99

Isoelectric Point (pI)

50.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 444
Acc65I GGTACC 1 cut(s) 103
AccB1I GGYRCC 3 cut(s) 83, 103, 429
AccB7I CCANNNNNTGG 2 cut(s) 1109, 1330
AccBSI CCGCTC 1 cut(s) 2267
AccI GTMKAC 1 cut(s) 2325
AciI CCGC 6 cut(s) 184, 417, 907, 1469, 1793, 2267
AclWI GGATC 2 cut(s) 1264, 1445
AcsI RAATTY 2 cut(s) 997, 2256
AcuI CTGAAG 4 cut(s) 890, 1269, 1381, 1734
AcvI CACGTG 1 cut(s) 1109
AcyI GRCGYC 2 cut(s) 384, 441
AdeI CACNNNGTG 1 cut(s) 1109
AfaI GTAC 4 cut(s) 105, 139, 500, 1211
AjnI CCWGG 8 cut(s) 143, 545, 687, 1156, 1195, 1943, 2296, 2314
AleI CACNNNNGTG 1 cut(s) 98
Alw21I GWGCWC 1 cut(s) 634
Alw26I GTCTC 5 cut(s) 215, 668, 1486, 2075, 2212
AlwI GGATC 2 cut(s) 1264, 1445
AlwNI CAGNNNCTG 2 cut(s) 399, 1330
AoxI GGCC 8 cut(s) 289, 640, 1192, 1742, 1759, 2143, 2300, 2317
ApeKI GCWGC 3 cut(s) 399, 538, 827
ApoI RAATTY 2 cut(s) 997, 2256
AseI ATTAAT 1 cut(s) 1461
Asp700I GAANNNNTTC 4 cut(s) 596, 1430, 1634, 1722
Asp718I GGTACC 1 cut(s) 103
AsuC2I CCSGG 5 cut(s) 470, 1022, 1357, 1802, 2119
AvaII GGWCC 7 cut(s) 242, 277, 834, 957, 1100, 1359, 1676
AxyI CCTNAGG 2 cut(s) 213, 404
BaeGI GKGCMC 2 cut(s) 88, 432
BaeI ACNNNNGTAYC 2 cut(s) 1201, 1234
BanI GGYRCC 3 cut(s) 83, 103, 429
BanII GRGCYC 2 cut(s) 486, 737
BarI GAAGNNNNNNTAC 2 cut(s) 1502, 1534
BbrPI CACGTG 1 cut(s) 1109
BbsI GAAGAC 2 cut(s) 372, 2053
Bbv12I GWGCWC 1 cut(s) 634
BbvI GCAGC 3 cut(s) 386, 550, 814
BccI CCATC 5 cut(s) 206, 441, 470, 2034, 2300
BciT130I CCWGG 8 cut(s) 145, 547, 689, 1158, 1197, 1945, 2298, 2316
BciVI GTATCC 1 cut(s) 1883
BclI TGATCA 1 cut(s) 90
BcnI CCSGG 5 cut(s) 470, 1022, 1357, 1802, 2119
BcoDI GTCTC 5 cut(s) 215, 668, 1486, 2075, 2212
BfaI CTAG 5 cut(s) 233, 425, 645, 855, 1980
BfmI CTRYAG 2 cut(s) 1831, 2326
BfuI GTATCC 1 cut(s) 1883
BglII AGATCT 1 cut(s) 1976
BisI GCNGC 3 cut(s) 400, 539, 828
BlsI GCNGC 3 cut(s) 401, 540, 829
Bme18I GGWCC 7 cut(s) 242, 277, 834, 957, 1100, 1359, 1676
BmrI ACTGGG 4 cut(s) 365, 922, 1340, 1867
BmsI GCATC 5 cut(s) 32, 652, 664, 765, 1907
BmuI ACTGGG 4 cut(s) 365, 922, 1340, 1867
BpiI GAAGAC 2 cut(s) 372, 2053
BplI GAGNNNNNCTC 6 cut(s) 508, 540, 722, 754, 2207, 2239
BpmI CTGGAG 3 cut(s) 1179, 2018, 2270
BpuEI CTTGAG 4 cut(s) 772, 836, 1295, 2234
BpuMI CCSGG 5 cut(s) 470, 1022, 1357, 1802, 2119
BsaAI YACGTR 2 cut(s) 137, 1109
BsaHI GRCGYC 2 cut(s) 384, 441
BsaWI WCCGGW 1 cut(s) 1773
BsaXI ACNNNNNCTCC 6 cut(s) 179, 209, 967, 997, 2161, 2191
Bse118I RCCGGY 2 cut(s) 456, 1740
Bse21I CCTNAGG 2 cut(s) 213, 404
BseBI CCWGG 8 cut(s) 145, 547, 689, 1158, 1197, 1945, 2298, 2316
BseGI GGATG 4 cut(s) 516, 1510, 1801, 2311
BseMII CTCAG 5 cut(s) 204, 351, 406, 663, 2156
BseRI GAGGAG 5 cut(s) 727, 775, 1176, 1219, 2182
BseSI GKGCMC 2 cut(s) 88, 432
BseXI GCAGC 3 cut(s) 386, 550, 814
BseYI CCCAGC 3 cut(s) 830, 1063, 2172
Bsh1285I CGRYCG 1 cut(s) 1741
BshFI GGCC 8 cut(s) 291, 642, 1194, 1744, 1761, 2145, 2302, 2319
BshNI GGYRCC 3 cut(s) 83, 103, 429
BsiEI CGRYCG 1 cut(s) 1741
BsiHKAI GWGCWC 1 cut(s) 634
BslFI GGGAC 6 cut(s) 263, 604, 1046, 1320, 1662, 2018
BsmAI GTCTC 5 cut(s) 215, 668, 1486, 2075, 2212
BsmFI GGGAC 6 cut(s) 263, 604, 1046, 1320, 1662, 2018
BsmI GAATGC 2 cut(s) 325, 2123
BsnI GGCC 8 cut(s) 291, 642, 1194, 1744, 1761, 2145, 2302, 2319
Bsp1286I GDGCHC 5 cut(s) 88, 432, 486, 634, 737
Bsp143I GATC 5 cut(s) 90, 1269, 1450, 1660, 1976
Bsp19I CCATGG 4 cut(s) 245, 506, 1362, 1601
BspACI CCGC 6 cut(s) 184, 417, 907, 1469, 1793, 2267
BspANI GGCC 8 cut(s) 291, 642, 1194, 1744, 1761, 2145, 2302, 2319
BspCNI CTCAG 5 cut(s) 205, 350, 405, 664, 2157
BspHI TCATGA 1 cut(s) 658
BspPI GGATC 2 cut(s) 1264, 1445
BspQI GCTCTTC 1 cut(s) 2097
BspT107I GGYRCC 3 cut(s) 83, 103, 429
BsrBI CCGCTC 1 cut(s) 2267
BsrFI RCCGGY 2 cut(s) 456, 1740
BssAI RCCGGY 2 cut(s) 456, 1740
BssMI GATC 5 cut(s) 90, 1269, 1450, 1660, 1976
BssNI GRCGYC 2 cut(s) 384, 441
BssT1I CCWWGG 5 cut(s) 245, 506, 837, 1362, 1601
Bst2UI CCWGG 8 cut(s) 145, 547, 689, 1158, 1197, 1945, 2298, 2316
Bst4CI ACNGT 6 cut(s) 557, 1264, 1321, 1832, 2277, 2330
Bst6I CTCTTC 8 cut(s) 509, 587, 1026, 1162, 1288, 1950, 2097, 2158
BstACI GRCGYC 2 cut(s) 384, 441
BstBAI YACGTR 2 cut(s) 137, 1109
BstC8I GCNNGC 5 cut(s) 118, 482, 640, 667, 876
BstDEI CTNAG 9 cut(s) 213, 337, 392, 404, 672, 891, 1865, 2165, 2203
BstDSI CCRYGG 4 cut(s) 245, 506, 1362, 1601
BstEII GGTNACC 1 cut(s) 841
BstENI CCTNNNNNAGG 2 cut(s) 53, 1161
BstF5I GGATG 4 cut(s) 516, 1510, 1801, 2311
BstKTI GATC 5 cut(s) 93, 1272, 1453, 1663, 1979
BstMAI GTCTC 5 cut(s) 215, 668, 1486, 2075, 2212
BstMBI GATC 5 cut(s) 90, 1269, 1450, 1660, 1976
BstMCI CGRYCG 1 cut(s) 1741
BstMWI GCNNNNNNNGC 5 cut(s) 126, 547, 775, 1741, 2316
BstNI CCWGG 8 cut(s) 145, 547, 689, 1158, 1197, 1945, 2298, 2316
BstNSI RCATGY 1 cut(s) 254
BstPI GGTNACC 1 cut(s) 841
BstSFI CTRYAG 2 cut(s) 1831, 2326
BstSLI GKGCMC 2 cut(s) 88, 432
BstSNI TACGTA 1 cut(s) 137
BstV1I GCAGC 3 cut(s) 386, 550, 814
BstV2I GAAGAC 2 cut(s) 372, 2053
BstX2I RGATCY 2 cut(s) 1269, 1976
BstXI CCANNNNNNTGG 1 cut(s) 1608
BstYI RGATCY 2 cut(s) 1269, 1976
Bsu36I CCTNAGG 2 cut(s) 213, 404
BsuI GTATCC 1 cut(s) 1883
BsuRI GGCC 8 cut(s) 291, 642, 1194, 1744, 1761, 2145, 2302, 2319
BtgI CCRYGG 4 cut(s) 245, 506, 1362, 1601
BtsCI GGATG 4 cut(s) 516, 1510, 1801, 2311
BtsI GCAGTG 1 cut(s) 1893
BtsIMutI CAGTG 5 cut(s) 1087, 1606, 1828, 1893, 2246
Cac8I GCNNGC 5 cut(s) 118, 482, 640, 667, 876
CaiI CAGNNNCTG 2 cut(s) 399, 1330
CciI TCATGA 1 cut(s) 658
Cfr10I RCCGGY 2 cut(s) 456, 1740
CseI GACGC 1 cut(s) 392
CsiI ACCWGGT 1 cut(s) 687
Csp6I GTAC 4 cut(s) 104, 138, 499, 1210
CspCI CAANNNNNGTGG 2 cut(s) 1654, 1689
CviQI GTAC 4 cut(s) 104, 138, 499, 1210
DdeI CTNAG 9 cut(s) 213, 337, 392, 404, 672, 891, 1865, 2165, 2203
DpnI GATC 5 cut(s) 92, 1271, 1452, 1662, 1978
DpnII GATC 5 cut(s) 90, 1269, 1450, 1660, 1976
DraIII CACNNNGTG 1 cut(s) 1109
Eam1104I CTCTTC 8 cut(s) 509, 587, 1026, 1162, 1288, 1950, 2097, 2158
EarI CTCTTC 8 cut(s) 509, 587, 1026, 1162, 1288, 1950, 2097, 2158
EciI GGCGGA 1 cut(s) 1808
Eco105I TACGTA 1 cut(s) 137
Eco130I CCWWGG 5 cut(s) 245, 506, 837, 1362, 1601
Eco147I AGGCCT 2 cut(s) 2145, 2319
Eco24I GRGCYC 2 cut(s) 486, 737
Eco47I GGWCC 7 cut(s) 242, 277, 834, 957, 1100, 1359, 1676
Eco57I CTGAAG 4 cut(s) 890, 1269, 1381, 1734
Eco72I CACGTG 1 cut(s) 1109
Eco81I CCTNAGG 2 cut(s) 213, 404
Eco91I GGTNACC 1 cut(s) 841
EcoNI CCTNNNNNAGG 2 cut(s) 53, 1161
EcoO109I RGGNCCY 1 cut(s) 1760
EcoO65I GGTNACC 1 cut(s) 841
EcoRI GAATTC 1 cut(s) 997
EcoRII CCWGG 8 cut(s) 143, 545, 687, 1156, 1195, 1943, 2296, 2314
EcoT14I CCWWGG 5 cut(s) 245, 506, 837, 1362, 1601
EcoT38I GRGCYC 2 cut(s) 486, 737
ErhI CCWWGG 5 cut(s) 245, 506, 837, 1362, 1601
FaqI GGGAC 6 cut(s) 263, 604, 1046, 1320, 1662, 2018
FauI CCCGC 1 cut(s) 1462
FauNDI CATATG 1 cut(s) 625
FbaI TGATCA 1 cut(s) 90
FblI GTMKAC 1 cut(s) 2325
Fnu4HI GCNGC 3 cut(s) 400, 539, 828
FokI GGATG 4 cut(s) 523, 1517, 1808, 2318
FriOI GRGCYC 2 cut(s) 486, 737
Fsp4HI GCNGC 3 cut(s) 400, 539, 828
FspBI CTAG 5 cut(s) 233, 425, 645, 855, 1980
GluI GCNGC 3 cut(s) 400, 539, 828
GsaI CCCAGC 3 cut(s) 834, 1067, 2176
GsuI CTGGAG 3 cut(s) 1179, 2018, 2270
HaeIII GGCC 8 cut(s) 291, 642, 1194, 1744, 1761, 2145, 2302, 2319
HgaI GACGC 1 cut(s) 392
Hin1I GRCGYC 2 cut(s) 384, 441
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HindIII AAGCTT 1 cut(s) 872
HinfI GANTC 7 cut(s) 617, 764, 1081, 1175, 1280, 1921, 2180
Hpy166II GTNNAC 7 cut(s) 256, 382, 600, 1103, 1379, 1893, 2326
Hpy8I GTNNAC 7 cut(s) 256, 382, 600, 1103, 1379, 1893, 2326
HpyAV CCTTC 9 cut(s) 690, 821, 931, 1021, 1194, 1504, 1583, 1624, 2135
HpyCH4III ACNGT 6 cut(s) 557, 1264, 1321, 1832, 2277, 2330
HpyCH4IV ACGT 4 cut(s) 28, 136, 441, 1108
HpyCH4V TGCA 7 cut(s) 23, 116, 173, 447, 665, 778, 1898
HpyF10VI GCNNNNNNNGC 5 cut(s) 126, 547, 775, 1741, 2316
HpyF3I CTNAG 9 cut(s) 213, 337, 392, 404, 672, 891, 1865, 2165, 2203
HpySE526I ACGT 4 cut(s) 28, 136, 441, 1108
Hsp92I GRCGYC 2 cut(s) 384, 441
KpnI GGTACC 1 cut(s) 107
Ksp22I TGATCA 1 cut(s) 90
Kzo9I GATC 5 cut(s) 90, 1269, 1450, 1660, 1976
LguI GCTCTTC 1 cut(s) 2097
LmnI GCTCC 8 cut(s) 134, 629, 740, 988, 1336, 1352, 1861, 2169
Lsp1109I GCAGC 3 cut(s) 386, 550, 814
LweI GCATC 5 cut(s) 32, 652, 664, 765, 1907
MabI ACCWGGT 1 cut(s) 687
MaeI CTAG 5 cut(s) 233, 425, 645, 855, 1980
MaeII ACGT 4 cut(s) 28, 136, 441, 1108
MaeIII GTNAC 5 cut(s) 791, 841, 880, 1016, 1992
MalI GATC 5 cut(s) 92, 1271, 1452, 1662, 1978
MbiI CCGCTC 1 cut(s) 2267
MboI GATC 5 cut(s) 90, 1269, 1450, 1660, 1976
MfeI CAATTG 2 cut(s) 1421, 1446
MflI RGATCY 2 cut(s) 1269, 1976
MhlI GDGCHC 5 cut(s) 88, 432, 486, 634, 737
MlyI GAGTC 3 cut(s) 626, 758, 1274
MmeI TCCRAC 2 cut(s) 673, 966
MroXI GAANNNNTTC 4 cut(s) 596, 1430, 1634, 1722
MseI TTAA 9 cut(s) 375, 411, 465, 1236, 1461, 1560, 1752, 1820, 2196
MslI CAYNNNNRTG 2 cut(s) 98, 660
MspA1I CMGCKG 2 cut(s) 907, 1469
MunI CAATTG 2 cut(s) 1421, 1446
Mva1269I GAATGC 2 cut(s) 325, 2123
MvaI CCWGG 8 cut(s) 145, 547, 689, 1158, 1197, 1945, 2298, 2316
MwoI GCNNNNNNNGC 5 cut(s) 126, 547, 775, 1741, 2316
NciI CCSGG 5 cut(s) 470, 1022, 1357, 1802, 2119
NcoI CCATGG 4 cut(s) 245, 506, 1362, 1601
NdeI CATATG 1 cut(s) 625
NdeII GATC 5 cut(s) 90, 1269, 1450, 1660, 1976
NmeAIII GCCGAG 2 cut(s) 514, 2204
NmuCI GTSAC 2 cut(s) 880, 1016
NspI RCATGY 1 cut(s) 254
OliI CACNNNNGTG 1 cut(s) 98
PagI TCATGA 1 cut(s) 658
PasI CCCWGGG 1 cut(s) 2297
PceI AGGCCT 2 cut(s) 2145, 2319
PciSI GCTCTTC 1 cut(s) 2097
PctI GAATGC 2 cut(s) 325, 2123
PdmI GAANNNNTTC 4 cut(s) 596, 1430, 1634, 1722
PfeI GAWTC 4 cut(s) 1081, 1175, 1921, 2180
PflMI CCANNNNNTGG 2 cut(s) 1109, 1330
PfoI TCCNGGA 2 cut(s) 143, 1156
PkrI GCNGC 3 cut(s) 401, 540, 829
PleI GAGTC 3 cut(s) 625, 758, 1274
PmaCI CACGTG 1 cut(s) 1109
PmlI CACGTG 1 cut(s) 1109
PpsI GAGTC 3 cut(s) 625, 758, 1274
Ppu21I YACGTR 2 cut(s) 137, 1109
PshBI ATTAAT 1 cut(s) 1461
Psp6I CCWGG 8 cut(s) 143, 545, 687, 1156, 1195, 1943, 2296, 2314
PspCI CACGTG 1 cut(s) 1109
PspEI GGTNACC 1 cut(s) 841
PspFI CCCAGC 3 cut(s) 830, 1063, 2172
PspGI CCWGG 8 cut(s) 143, 545, 687, 1156, 1195, 1943, 2296, 2314
PstNI CAGNNNCTG 2 cut(s) 399, 1330
PsuI RGATCY 2 cut(s) 1269, 1976
RsaI GTAC 4 cut(s) 105, 139, 500, 1211
RsaNI GTAC 4 cut(s) 104, 138, 499, 1210
RseI CAYNNNNRTG 2 cut(s) 98, 660
SapI GCTCTTC 1 cut(s) 2097
SaqAI TTAA 9 cut(s) 375, 411, 465, 1236, 1461, 1560, 1752, 1820, 2196
SatI GCNGC 3 cut(s) 400, 539, 828
Sau3AI GATC 5 cut(s) 90, 1269, 1450, 1660, 1976
SchI GAGTC 3 cut(s) 626, 758, 1274
SduI GDGCHC 5 cut(s) 88, 432, 486, 634, 737
SexAI ACCWGGT 1 cut(s) 687
SfaNI GCATC 5 cut(s) 32, 652, 664, 765, 1907
SfcI CTRYAG 2 cut(s) 1831, 2326
SinI GGWCC 7 cut(s) 242, 277, 834, 957, 1100, 1359, 1676
SmiMI CAYNNNNRTG 2 cut(s) 98, 660
SmlI CTYRAG 4 cut(s) 787, 815, 1274, 2213
SmoI CTYRAG 4 cut(s) 787, 815, 1274, 2213
SnaBI TACGTA 1 cut(s) 137
SseBI AGGCCT 2 cut(s) 2145, 2319
SsiI CCGC 6 cut(s) 184, 417, 907, 1469, 1793, 2267
SspI AATATT 1 cut(s) 112
SspMI CTAG 5 cut(s) 233, 425, 645, 855, 1980
StuI AGGCCT 2 cut(s) 2145, 2319
StyI CCWWGG 5 cut(s) 245, 506, 837, 1362, 1601
TaaI ACNGT 6 cut(s) 557, 1264, 1321, 1832, 2277, 2330
TaiI ACGT 4 cut(s) 31, 139, 444, 1111
TaqI TCGA 5 cut(s) 51, 953, 995, 1737, 2263
TfiI GAWTC 4 cut(s) 1081, 1175, 1921, 2180
Tru1I TTAA 9 cut(s) 375, 411, 465, 1236, 1461, 1560, 1752, 1820, 2196
Tru9I TTAA 9 cut(s) 375, 411, 465, 1236, 1461, 1560, 1752, 1820, 2196
TscAI CASTG 5 cut(s) 1094, 1613, 1835, 1900, 2253
TseFI GTSAC 2 cut(s) 880, 1016
TseI GCWGC 3 cut(s) 399, 538, 827
Tsp45I GTSAC 2 cut(s) 880, 1016
TspDTI ATGAA 8 cut(s) 17, 323, 527, 560, 1578, 1596, 1627, 2249
TspGWI ACGGA 1 cut(s) 617
TspRI CASTG 5 cut(s) 1094, 1613, 1835, 1900, 2253
Van91I CCANNNNNTGG 2 cut(s) 1109, 1330
VpaK11BI GGWCC 7 cut(s) 242, 277, 834, 957, 1100, 1359, 1676
VspI ATTAAT 1 cut(s) 1461
XagI CCTNNNNNAGG 2 cut(s) 53, 1161
XapI RAATTY 2 cut(s) 997, 2256
XbaI TCTAGA 1 cut(s) 1979
XceI RCATGY 1 cut(s) 254
XmiI GTMKAC 1 cut(s) 2325
XmnI GAANNNNTTC 4 cut(s) 596, 1430, 1634, 1722
XspI CTAG 5 cut(s) 233, 425, 645, 855, 1980
ZraI GACGTC 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.