Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 119 |
| AccB1I | GGYRCC | 1 cut(s) | 119 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 372 |
| AccI | GTMKAC | 1 cut(s) | 81 |
| AclWI | GGATC | 5 cut(s) | 253, 370, 383, 461, 474 |
| AcoI | YGGCCR | 2 cut(s) | 193, 323 |
| AcsI | RAATTY | 1 cut(s) | 436 |
| AfaI | GTAC | 3 cut(s) | 121, 230, 393 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 31, 149, 372 |
| AflIII | ACRYGT | 1 cut(s) | 225 |
| AgsI | TTSAA | 2 cut(s) | 50, 458 |
| AjnI | CCWGG | 3 cut(s) | 111, 142, 441 |
| AluBI | AGCT | 4 cut(s) | 164, 260, 430, 479 |
| AluI | AGCT | 4 cut(s) | 164, 260, 430, 479 |
| AlwI | GGATC | 5 cut(s) | 253, 370, 383, 461, 474 |
| AoxI | GGCC | 2 cut(s) | 193, 323 |
| ApoI | RAATTY | 1 cut(s) | 436 |
| Asp718I | GGTACC | 1 cut(s) | 119 |
| AspS9I | GGNCC | 1 cut(s) | 22 |
| AvaII | GGWCC | 1 cut(s) | 22 |
| AxyI | CCTNAGG | 1 cut(s) | 236 |
| BalI | TGGCCA | 2 cut(s) | 195, 325 |
| BamHI | GGATCC | 2 cut(s) | 375, 466 |
| BanI | GGYRCC | 1 cut(s) | 119 |
| BanII | GRGCYC | 1 cut(s) | 284 |
| BbsI | GAAGAC | 1 cut(s) | 191 |
| BccI | CCATC | 1 cut(s) | 374 |
| BciT130I | CCWGG | 3 cut(s) | 113, 144, 443 |
| BfaI | CTAG | 1 cut(s) | 257 |
| Bme1390I | CCNGG | 3 cut(s) | 113, 144, 443 |
| Bme18I | GGWCC | 1 cut(s) | 22 |
| BmgT120I | GGNCC | 1 cut(s) | 22 |
| BmiI | GGNNCC | 5 cut(s) | 24, 121, 141, 377, 468 |
| BmrFI | CCNGG | 3 cut(s) | 113, 144, 443 |
| BpiI | GAAGAC | 1 cut(s) | 191 |
| BpmI | CTGGAG | 1 cut(s) | 293 |
| BsaJI | CCNNGG | 3 cut(s) | 284, 385, 442 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 31, 149, 372 |
| Bse1I | ACTGG | 2 cut(s) | 276, 326 |
| Bse21I | CCTNAGG | 1 cut(s) | 236 |
| BseBI | CCWGG | 3 cut(s) | 113, 144, 443 |
| BseDI | CCNNGG | 3 cut(s) | 284, 385, 442 |
| BseGI | GGATG | 1 cut(s) | 40 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 31, 149, 372 |
| BseMII | CTCAG | 3 cut(s) | 240, 375, 488 |
| BseNI | ACTGG | 2 cut(s) | 276, 326 |
| BseRI | GAGGAG | 2 cut(s) | 152, 290 |
| BseYI | CCCAGC | 2 cut(s) | 430, 479 |
| BshFI | GGCC | 2 cut(s) | 195, 325 |
| BshNI | GGYRCC | 1 cut(s) | 119 |
| BslFI | GGGAC | 1 cut(s) | 8 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 31, 149, 372 |
| BsmFI | GGGAC | 1 cut(s) | 8 |
| BsnI | GGCC | 2 cut(s) | 195, 325 |
| Bsp1286I | GDGCHC | 1 cut(s) | 284 |
| Bsp1407I | TGTACA | 1 cut(s) | 228 |
| Bsp143I | GATC | 4 cut(s) | 245, 375, 405, 466 |
| Bsp19I | CCATGG | 2 cut(s) | 284, 385 |
| BspANI | GGCC | 2 cut(s) | 195, 325 |
| BspCNI | CTCAG | 3 cut(s) | 241, 374, 489 |
| BspLI | GGNNCC | 5 cut(s) | 24, 121, 141, 377, 468 |
| BspPI | GGATC | 5 cut(s) | 253, 370, 383, 461, 474 |
| BspT107I | GGYRCC | 1 cut(s) | 119 |
| BsrGI | TGTACA | 1 cut(s) | 228 |
| BsrI | ACTGG | 2 cut(s) | 276, 326 |
| BssECI | CCNNGG | 3 cut(s) | 284, 385, 442 |
| BssMI | GATC | 4 cut(s) | 245, 375, 405, 466 |
| BssT1I | CCWWGG | 2 cut(s) | 284, 385 |
| Bst2UI | CCWGG | 3 cut(s) | 113, 144, 443 |
| Bst4CI | ACNGT | 1 cut(s) | 77 |
| BstAUI | TGTACA | 1 cut(s) | 228 |
| BstDEI | CTNAG | 4 cut(s) | 236, 249, 361, 497 |
| BstDSI | CCRYGG | 2 cut(s) | 284, 385 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 147 |
| BstF5I | GGATG | 1 cut(s) | 40 |
| BstKTI | GATC | 4 cut(s) | 248, 378, 408, 469 |
| BstMBI | GATC | 4 cut(s) | 245, 375, 405, 466 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 419 |
| BstNI | CCWGG | 3 cut(s) | 113, 144, 443 |
| BstNSI | RCATGY | 2 cut(s) | 88, 229 |
| BstSCI | CCNGG | 3 cut(s) | 111, 142, 441 |
| BstV2I | GAAGAC | 1 cut(s) | 191 |
| BstX2I | RGATCY | 3 cut(s) | 245, 375, 466 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 386, 430 |
| BstYI | RGATCY | 3 cut(s) | 245, 375, 466 |
| Bsu36I | CCTNAGG | 1 cut(s) | 236 |
| BsuRI | GGCC | 2 cut(s) | 195, 325 |
| BtgI | CCRYGG | 2 cut(s) | 284, 385 |
| BtsCI | GGATG | 1 cut(s) | 40 |
| BtsIMutI | CAGTG | 2 cut(s) | 82, 319 |
| Cfr13I | GGNCC | 1 cut(s) | 22 |
| CsiI | ACCWGGT | 1 cut(s) | 111 |
| Csp6I | GTAC | 3 cut(s) | 120, 229, 392 |
| CviAII | CATG | 6 cut(s) | 85, 101, 172, 226, 285, 386 |
| CviQI | GTAC | 3 cut(s) | 120, 229, 392 |
| DdeI | CTNAG | 4 cut(s) | 236, 249, 361, 497 |
| DpnI | GATC | 4 cut(s) | 247, 377, 407, 468 |
| DpnII | GATC | 4 cut(s) | 245, 375, 405, 466 |
| EaeI | YGGCCR | 2 cut(s) | 193, 323 |
| Eco130I | CCWWGG | 2 cut(s) | 284, 385 |
| Eco24I | GRGCYC | 1 cut(s) | 284 |
| Eco47I | GGWCC | 1 cut(s) | 22 |
| Eco81I | CCTNAGG | 1 cut(s) | 236 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 147 |
| EcoO109I | RGGNCCY | 1 cut(s) | 22 |
| EcoRII | CCWGG | 3 cut(s) | 111, 142, 441 |
| EcoT14I | CCWWGG | 2 cut(s) | 284, 385 |
| EcoT38I | GRGCYC | 1 cut(s) | 284 |
| ErhI | CCWWGG | 2 cut(s) | 284, 385 |
| FaeI | CATG | 6 cut(s) | 88, 104, 175, 229, 288, 389 |
| FaqI | GGGAC | 1 cut(s) | 8 |
| FatI | CATG | 6 cut(s) | 84, 100, 171, 225, 284, 385 |
| FauNDI | CATATG | 1 cut(s) | 179 |
| FblI | GTMKAC | 1 cut(s) | 81 |
| FokI | GGATG | 1 cut(s) | 47 |
| FriOI | GRGCYC | 1 cut(s) | 284 |
| FspBI | CTAG | 1 cut(s) | 257 |
| GsaI | CCCAGC | 2 cut(s) | 434, 483 |
| GsuI | CTGGAG | 1 cut(s) | 293 |
| HaeIII | GGCC | 2 cut(s) | 195, 325 |
| Hin1II | CATG | 6 cut(s) | 88, 104, 175, 229, 288, 389 |
| HincII | GTYRAC | 1 cut(s) | 82 |
| HindII | GTYRAC | 1 cut(s) | 82 |
| HinfI | GANTC | 2 cut(s) | 187, 199 |
| Hpy166II | GTNNAC | 1 cut(s) | 82 |
| Hpy188I | TCNGA | 2 cut(s) | 250, 498 |
| Hpy188III | TCNNGA | 2 cut(s) | 217, 373 |
| Hpy8I | GTNNAC | 1 cut(s) | 82 |
| HpyAV | CCTTC | 2 cut(s) | 32, 37 |
| HpyCH4III | ACNGT | 1 cut(s) | 77 |
| HpyCH4V | TGCA | 1 cut(s) | 536 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 419 |
| HpyF3I | CTNAG | 4 cut(s) | 236, 249, 361, 497 |
| Hsp92II | CATG | 6 cut(s) | 88, 104, 175, 229, 288, 389 |
| KpnI | GGTACC | 1 cut(s) | 123 |
| Kzo9I | GATC | 4 cut(s) | 245, 375, 405, 466 |
| LmnI | GCTCC | 1 cut(s) | 139 |
| MabI | ACCWGGT | 1 cut(s) | 111 |
| MaeI | CTAG | 1 cut(s) | 257 |
| MaeIII | GTNAC | 1 cut(s) | 352 |
| MalI | GATC | 4 cut(s) | 247, 377, 407, 468 |
| MboI | GATC | 4 cut(s) | 245, 375, 405, 466 |
| MboII | GAAGA | 2 cut(s) | 196, 361 |
| MflI | RGATCY | 3 cut(s) | 245, 375, 466 |
| MhlI | GDGCHC | 1 cut(s) | 284 |
| MlsI | TGGCCA | 2 cut(s) | 195, 325 |
| MluCI | AATT | 4 cut(s) | 42, 64, 436, 453 |
| MluNI | TGGCCA | 2 cut(s) | 195, 325 |
| MlyI | GAGTC | 1 cut(s) | 181 |
| MnlI | CCTC | 9 cut(s) | 13, 25, 130, 146, 268, 309, 457, 498, 540 |
| Mox20I | TGGCCA | 2 cut(s) | 195, 325 |
| MscI | TGGCCA | 2 cut(s) | 195, 325 |
| Msp20I | TGGCCA | 2 cut(s) | 195, 325 |
| MspR9I | CCNGG | 3 cut(s) | 113, 144, 443 |
| MvaI | CCWGG | 3 cut(s) | 113, 144, 443 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 419 |
| NcoI | CCATGG | 2 cut(s) | 284, 385 |
| NdeI | CATATG | 1 cut(s) | 179 |
| NdeII | GATC | 4 cut(s) | 245, 375, 405, 466 |
| NlaIII | CATG | 6 cut(s) | 88, 104, 175, 229, 288, 389 |
| NlaIV | GGNNCC | 5 cut(s) | 24, 121, 141, 377, 468 |
| NspI | RCATGY | 2 cut(s) | 88, 229 |
| PciI | ACATGT | 1 cut(s) | 225 |
| PfeI | GAWTC | 1 cut(s) | 199 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 372 |
| PleI | GAGTC | 1 cut(s) | 181 |
| PpsI | GAGTC | 1 cut(s) | 181 |
| PpuMI | RGGWCCY | 1 cut(s) | 22 |
| PscI | ACATGT | 1 cut(s) | 225 |
| Psp5II | RGGWCCY | 1 cut(s) | 22 |
| Psp6I | CCWGG | 3 cut(s) | 111, 142, 441 |
| PspFI | CCCAGC | 2 cut(s) | 430, 479 |
| PspGI | CCWGG | 3 cut(s) | 111, 142, 441 |
| PspN4I | GGNNCC | 5 cut(s) | 24, 121, 141, 377, 468 |
| PspPI | GGNCC | 1 cut(s) | 22 |
| PspPPI | RGGWCCY | 1 cut(s) | 22 |
| PsuI | RGATCY | 3 cut(s) | 245, 375, 466 |
| RsaI | GTAC | 3 cut(s) | 121, 230, 393 |
| RsaNI | GTAC | 3 cut(s) | 120, 229, 392 |
| SalI | GTCGAC | 1 cut(s) | 80 |
| Sau3AI | GATC | 4 cut(s) | 245, 375, 405, 466 |
| Sau96I | GGNCC | 1 cut(s) | 22 |
| SchI | GAGTC | 1 cut(s) | 181 |
| ScrFI | CCNGG | 3 cut(s) | 113, 144, 443 |
| SduI | GDGCHC | 1 cut(s) | 284 |
| SexAI | ACCWGGT | 1 cut(s) | 111 |
| SinI | GGWCC | 1 cut(s) | 22 |
| Sse9I | AATT | 4 cut(s) | 42, 64, 436, 453 |
| SspMI | CTAG | 1 cut(s) | 257 |
| StyD4I | CCNGG | 3 cut(s) | 111, 142, 441 |
| StyI | CCWWGG | 2 cut(s) | 284, 385 |
| TaaI | ACNGT | 1 cut(s) | 77 |
| TaqI | TCGA | 3 cut(s) | 30, 81, 516 |
| TaqII | GACCGA | 1 cut(s) | 49 |
| TasI | AATT | 4 cut(s) | 42, 64, 436, 453 |
| TatI | WGTACW | 1 cut(s) | 228 |
| TfiI | GAWTC | 1 cut(s) | 199 |
| TscAI | CASTG | 2 cut(s) | 82, 326 |
| TspDTI | ATGAA | 2 cut(s) | 51, 532 |
| TspRI | CASTG | 2 cut(s) | 82, 326 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 372 |
| VpaK11BI | GGWCC | 1 cut(s) | 22 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 147 |
| XapI | RAATTY | 1 cut(s) | 436 |
| XceI | RCATGY | 2 cut(s) | 88, 229 |
| XmiI | GTMKAC | 1 cut(s) | 81 |
| XspI | CTAG | 1 cut(s) | 257 |