Rorug05G0337900

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000073
Physical Location & Seq
Reverse (-)
41023523 .. 41027508
3986 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0337900.1

Sequence Viewer

Length: 1776 bp
ATGGTGAAGAAGAAGCATTACAGGCCTGCCGGCAAGAAGAAGGAAGGAAACGCCGCCAGGTTCGTCACCAGGTCCCAAGCCGTAAAGCAACTCCAAGTCAATCTTCCCCTCTTCAGGAAACTATGTATTCTGAAAGGTATATTCCCTCGGGAGCCGAAGAAAAAGGTGAAGGGGAATCACCATACGTATTATCACTTGAAGGATGTTTCATTCATTCAACACGAACCGCTGCTCGACAAGATGAGGAATATCAGGGCATATGAAAAGAAAGTAAAGAAAGCCGAGGCGAAGAAGAACAGAGACCGTGCTAATATTCTCAGGCAGAGAAGACCCACTTACAAATTAGATAACGTTATATTGCAGAGGTATCCGAAGTTCATTGATGCATTGAGAGATTTGGATGATTGTCTCACAATGGTTCACCTCTTTGCGGCCTTACCTGCTATAGAGGATAGAATTGACGTGAAACGCATCCATAACTGTAGGAGGATGAGCCATGAATGGCAGGCTTTTATATCTCGGACTCATAAATTGCGCAAAGTCTTTGTATCTGTTAAAGGCATATATTATCAGGCCGAGGTAAAGGGGCAATTGATCACATGGTTGACTCCTCACCCTTTGCAGCAAGTTTTGACTGATGATGTTGACTTCAATATCATGCTAAACTTTTTGGAGTTTTATGAGGCTCTTCTTGCTTTTGTGAATTGTCATTTATATCGTTCCATAAATGTGAAGTATCCACCAATTCTTGATCCTCGATTGGAAGCTTTTGCAGCCGAACTGTATGCACTATCAAGATACTTCGATGCTAGTTCTCGGTCCTCTGTGTTGGATCCTCAGGTTTCAAGTTTGCCTGGATCCGGTAAAGTTGATGAGTCTGAATTAAGACTTGCCCAACTTCAGCATCAGCTTCCTTCCAATGAACCTGGTGCATTGATGGGTCTCGTTGAAAATGTTCCTGGTGAGGATGAAGAGGATAATGATACAATGATGTGTAAGGAACTCTTCAAGGATATGAAATTTTTCTTGAATCGTGAGGTTAATAGAGAATCATTATTGTTTGTGATTCCTGCTTTTGGTGGGATTGTGTCGTGGAAAGGAGATGGGGCCCCGTTTGAAGAAGATGATAACAGCATCACCCATCAGATTGTTGACAGGCCATTGCAGCATGAGCTCTATGAAGGAAGAAAATATGTTCAACCACAGTGGGTTTATGATTGTGTAAATGCCAAGAAAATTCTGCCTACTCGGGATTATTTGGCGGGACGAGAACTTCCCCCACATTTGTCACCTTTTGTTGACCCAAAGGAAGAAGGTTATGTTCCGGACTATGCCTTGAAAATTGAACAATGGAAGGCTGCTGAAATCCTCCCACTTCCAGATGTTGGAAAGGAAGATTTGGAAGATCCTCAGAATTTTGCTGACCTAGAAAAAGCAAAAGAAGCTGCAAAGAATGACAAGAAGCTGAAGGCTCTTCAGAAGGAGTATTTTGATGGATTGAAAGTGGAACTTAAGGGTGTACCGCCTTCATCCTCCATCTCAAAAACAGATAATCAGATTTCTGCTAAGGCGACCGAGGACAGGGAAGAATCTGATTTTGATTATGAACAAATTGCCAAGGATAAAGAAGAACTGGAACTACTTACTATTTCCAAAAAAAAGAGGGGTCTTTATGAAGCCATGAAGAAAGGCAAGAAACGAAAGCACGACAATGTTGAGGTTATCAAGGAACGGAAGAGAAAACTAAAAGAGTCTCAAAAATCAAGGGATGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_3 zf-CCHC_4

Protein Analysis

591

Amino Acids

68.56

Weight (kDa)

9.09

Isoelectric Point (pI)

44.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pescadillo_N PF06732 12 - 270 4.3e-109 Pescadillo N-terminus
BRCT_2 PF16589 335 - 419 1.3e-08 BRCT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 536
Acc36I ACCTGC 1 cut(s) 448
AccB7I CCANNNNNTGG 1 cut(s) 1385
AccIII TCCGGA 1 cut(s) 1324
AciI CCGC 5 cut(s) 54, 227, 431, 1262, 1523
AclI AACGTT 1 cut(s) 351
AclWI GGATC 6 cut(s) 746, 827, 840, 852, 865, 1400
AcsI RAATTY 3 cut(s) 1019, 1236, 1414
AcuI CTGAAG 4 cut(s) 97, 884, 1460, 1487
AfaI GTAC 1 cut(s) 1521
AfiI CCNNNNNNNGG 6 cut(s) 114, 430, 860, 1076, 1385, 1581
AflII CTTAAG 1 cut(s) 1511
AjiI CACGTC 1 cut(s) 463
AjnI CCWGG 5 cut(s) 56, 68, 853, 925, 958
AjuI GAANNNNNNNTTGG 2 cut(s) 87, 119
AluBI AGCT 5 cut(s) 767, 910, 1174, 1445, 1465
AluI AGCT 5 cut(s) 767, 910, 1174, 1445, 1465
Alw21I GWGCWC 1 cut(s) 1176
Alw26I GTCTC 4 cut(s) 294, 413, 947, 1758
AlwI GGATC 6 cut(s) 746, 827, 840, 852, 865, 1400
Ama87I CYCGRG 2 cut(s) 147, 1248
Aor13HI TCCGGA 1 cut(s) 1324
AoxI GGCC 5 cut(s) 23, 432, 573, 1107, 1157
ApaI GGGCCC 1 cut(s) 1111
ApeKI GCWGC 6 cut(s) 229, 622, 773, 1165, 1358, 1445
ApoI RAATTY 3 cut(s) 1019, 1236, 1414
Asp700I GAANNNNTTC 2 cut(s) 954, 1022
AspLEI GCGC 1 cut(s) 537
AspS9I GGNCC 4 cut(s) 72, 819, 1107, 1108
AsuHPI GGTGA 9 cut(s) 16, 58, 170, 178, 413, 605, 974, 1129, 1281
AvaI CYCGRG 2 cut(s) 147, 1248
AvaII GGWCC 2 cut(s) 72, 819
AxyI CCTNAGG 1 cut(s) 837
BaeGI GKGCMC 1 cut(s) 1111
BamHI GGATCC 2 cut(s) 832, 857
BanII GRGCYC 2 cut(s) 1111, 1176
BarI GAAGNNNNNNTAC 1 cut(s) 34
BbsI GAAGAC 1 cut(s) 334
Bbv12I GWGCWC 1 cut(s) 1176
BbvI GCAGC 6 cut(s) 216, 634, 785, 1177, 1345, 1432
BccI CCATC 6 cut(s) 931, 1097, 1149, 1487, 1544, 1763
BceAI ACGGC 1 cut(s) 65
BcgI CGANNNNNNTGC 2 cut(s) 767, 801
BciT130I CCWGG 5 cut(s) 58, 70, 855, 927, 960
BciVI GTATCC 2 cut(s) 378, 747
BclI TGATCA 1 cut(s) 594
BcoDI GTCTC 4 cut(s) 294, 413, 947, 1758
BfaI CTAG 2 cut(s) 810, 1427
BfmI CTRYAG 2 cut(s) 444, 481
BfrI CTTAAG 1 cut(s) 1511
BfuAI ACCTGC 1 cut(s) 448
BfuI GTATCC 2 cut(s) 378, 747
BisI GCNGC 8 cut(s) 54, 230, 432, 623, 774, 1166, 1359, 1446
BlsI GCNGC 8 cut(s) 55, 231, 433, 624, 775, 1167, 1360, 1447
Bme1390I CCNGG 5 cut(s) 58, 70, 855, 927, 960
Bme18I GGWCC 2 cut(s) 72, 819
BmeT110I CYCGRG 2 cut(s) 147, 1248
BmgBI CACGTC 1 cut(s) 463
BmgT120I GGNCC 4 cut(s) 72, 819, 1107, 1108
BmiI GGNNCC 7 cut(s) 74, 153, 834, 859, 1108, 1109, 1110
BmrFI CCNGG 5 cut(s) 58, 70, 855, 927, 960
BmsI GCATC 5 cut(s) 373, 480, 796, 913, 1143
BpiI GAAGAC 1 cut(s) 334
Bpu10I CCTNAGC 1 cut(s) 1566
BsaAI YACGTR 1 cut(s) 186
BsaI GGTCTC 2 cut(s) 294, 947
BsaJI CCNNGG 5 cut(s) 146, 282, 576, 1575, 1617
BsaWI WCCGGW 2 cut(s) 860, 1324
Bsc4I CCNNNNNNNGG 6 cut(s) 114, 430, 860, 1076, 1385, 1581
Bse118I RCCGGY 1 cut(s) 29
Bse1I ACTGG 1 cut(s) 1638
Bse21I CCTNAGG 1 cut(s) 837
Bse3DI GCAATG 1 cut(s) 1160
BseAI TCCGGA 1 cut(s) 1324
BseBI CCWGG 5 cut(s) 58, 70, 855, 927, 960
BseDI CCNNGG 5 cut(s) 146, 282, 576, 1575, 1617
BseGI GGATG 7 cut(s) 208, 406, 471, 495, 973, 1529, 1774
BseLI CCNNNNNNNGG 6 cut(s) 114, 430, 860, 1076, 1385, 1581
BseMI GCAATG 1 cut(s) 1160
BseMII CTCAG 3 cut(s) 331, 851, 1424
BseNI ACTGG 1 cut(s) 1638
BseRI GAGGAG 1 cut(s) 600
BseSI GKGCMC 1 cut(s) 1111
BseXI GCAGC 6 cut(s) 216, 634, 785, 1177, 1345, 1432
Bsh1285I CGRYCG 1 cut(s) 1575
BshFI GGCC 5 cut(s) 25, 434, 575, 1109, 1159
BsiEI CGRYCG 1 cut(s) 1575
BsiHKAI GWGCWC 1 cut(s) 1176
BsiHKCI CYCGRG 2 cut(s) 147, 1248
BsiSI CCGG 3 cut(s) 30, 861, 1325
BslFI GGGAC 2 cut(s) 58, 1278
BslI CCNNNNNNNGG 6 cut(s) 114, 430, 860, 1076, 1385, 1581
BsmAI GTCTC 4 cut(s) 294, 413, 947, 1758
BsmFI GGGAC 2 cut(s) 58, 1278
BsnI GGCC 5 cut(s) 25, 434, 575, 1109, 1159
Bso31I GGTCTC 2 cut(s) 294, 947
BsoBI CYCGRG 2 cut(s) 147, 1248
Bsp120I GGGCCC 1 cut(s) 1107
Bsp1286I GDGCHC 2 cut(s) 1111, 1176
Bsp13I TCCGGA 1 cut(s) 1324
Bsp143I GATC 5 cut(s) 594, 751, 832, 857, 1405
BspACI CCGC 5 cut(s) 54, 227, 431, 1262, 1523
BspANI GGCC 5 cut(s) 25, 434, 575, 1109, 1159
BspCNI CTCAG 3 cut(s) 330, 850, 1423
BspEI TCCGGA 1 cut(s) 1324
BspLI GGNNCC 7 cut(s) 74, 153, 834, 859, 1108, 1109, 1110
BspMI ACCTGC 1 cut(s) 448
BspPI GGATC 6 cut(s) 746, 827, 840, 852, 865, 1400
BspQI GCTCTTC 2 cut(s) 693, 1479
BspTI CTTAAG 1 cut(s) 1511
BspTNI GGTCTC 2 cut(s) 294, 947
BsrDI GCAATG 1 cut(s) 1160
BsrFI RCCGGY 1 cut(s) 29
BsrI ACTGG 1 cut(s) 1638
BssAI RCCGGY 1 cut(s) 29
BssECI CCNNGG 5 cut(s) 146, 282, 576, 1575, 1617
BssMI GATC 5 cut(s) 594, 751, 832, 857, 1405
BssT1I CCWWGG 1 cut(s) 1617
Bst2UI CCWGG 5 cut(s) 58, 70, 855, 927, 960
Bst4CI ACNGT 4 cut(s) 305, 482, 783, 1206
Bst6I CTCTTC 6 cut(s) 116, 693, 966, 1010, 1479, 1730
BstAFI CTTAAG 1 cut(s) 1511
BstBAI YACGTR 1 cut(s) 186
BstC8I GCNNGC 3 cut(s) 27, 31, 507
BstDEI CTNAG 4 cut(s) 317, 837, 1410, 1566
BstF5I GGATG 7 cut(s) 208, 406, 471, 495, 973, 1529, 1774
BstHHI GCGC 1 cut(s) 537
BstKTI GATC 5 cut(s) 597, 754, 835, 860, 1408
BstMAI GTCTC 4 cut(s) 294, 413, 947, 1758
BstMBI GATC 5 cut(s) 594, 751, 832, 857, 1405
BstMCI CGRYCG 1 cut(s) 1575
BstMWI GCNNNNNNNGC 7 cut(s) 22, 440, 692, 773, 1165, 1171, 1442
BstNI CCWGG 5 cut(s) 58, 70, 855, 927, 960
BstSCI CCNGG 5 cut(s) 56, 68, 853, 925, 958
BstSFI CTRYAG 2 cut(s) 444, 481
BstSLI GKGCMC 1 cut(s) 1111
BstSNI TACGTA 1 cut(s) 186
BstV1I GCAGC 6 cut(s) 216, 634, 785, 1177, 1345, 1432
BstV2I GAAGAC 1 cut(s) 334
BstX2I RGATCY 3 cut(s) 832, 857, 1405
BstYI RGATCY 3 cut(s) 832, 857, 1405
Bsu36I CCTNAGG 1 cut(s) 837
BsuI GTATCC 2 cut(s) 378, 747
BsuRI GGCC 5 cut(s) 25, 434, 575, 1109, 1159
BtrI CACGTC 1 cut(s) 463
BtsCI GGATG 7 cut(s) 208, 406, 471, 495, 973, 1529, 1774
BtsIMutI CAGTG 1 cut(s) 1211
BveI ACCTGC 1 cut(s) 448
Cac8I GCNNGC 3 cut(s) 27, 31, 507
CfoI GCGC 1 cut(s) 537
Cfr10I RCCGGY 1 cut(s) 29
Cfr13I GGNCC 4 cut(s) 72, 819, 1107, 1108
CsiI ACCWGGT 2 cut(s) 68, 925
Csp6I GTAC 1 cut(s) 1520
CspCI CAANNNNNGTGG 2 cut(s) 1187, 1222
CviAII CATG 5 cut(s) 497, 600, 658, 1169, 1681
CviQI GTAC 1 cut(s) 1520
DdeI CTNAG 4 cut(s) 317, 837, 1410, 1566
DpnI GATC 5 cut(s) 596, 753, 834, 859, 1407
DpnII GATC 5 cut(s) 594, 751, 832, 857, 1405
Eam1104I CTCTTC 6 cut(s) 116, 693, 966, 1010, 1479, 1730
EarI CTCTTC 6 cut(s) 116, 693, 966, 1010, 1479, 1730
Ecl136II GAGCTC 1 cut(s) 1174
Eco105I TACGTA 1 cut(s) 186
Eco130I CCWWGG 1 cut(s) 1617
Eco147I AGGCCT 1 cut(s) 25
Eco24I GRGCYC 2 cut(s) 1111, 1176
Eco31I GGTCTC 2 cut(s) 294, 947
Eco47I GGWCC 2 cut(s) 72, 819
Eco53kI GAGCTC 1 cut(s) 1174
Eco57I CTGAAG 4 cut(s) 97, 884, 1460, 1487
Eco81I CCTNAGG 1 cut(s) 837
Eco88I CYCGRG 2 cut(s) 147, 1248
EcoICRI GAGCTC 1 cut(s) 1174
EcoO109I RGGNCCY 3 cut(s) 72, 1107, 1108
EcoRII CCWGG 5 cut(s) 56, 68, 853, 925, 958
EcoT14I CCWWGG 1 cut(s) 1617
EcoT22I ATGCAT 1 cut(s) 388
EcoT38I GRGCYC 2 cut(s) 1111, 1176
ErhI CCWWGG 1 cut(s) 1617
FaeI CATG 5 cut(s) 500, 603, 661, 1172, 1684
FalI AAGNNNNNCTT 8 cut(s) 87, 119, 319, 351, 989, 1021, 1494, 1526
FaqI GGGAC 2 cut(s) 58, 1278
FatI CATG 5 cut(s) 496, 599, 657, 1168, 1680
FauI CCCGC 1 cut(s) 1255
FauNDI CATATG 1 cut(s) 259
FbaI TGATCA 1 cut(s) 594
Fnu4HI GCNGC 8 cut(s) 54, 230, 432, 623, 774, 1166, 1359, 1446
FokI GGATG 6 cut(s) 215, 413, 458, 502, 980, 1516
FriOI GRGCYC 2 cut(s) 1111, 1176
Fsp4HI GCNGC 8 cut(s) 54, 230, 432, 623, 774, 1166, 1359, 1446
FspBI CTAG 2 cut(s) 810, 1427
FspI TGCGCA 1 cut(s) 536
GlaI GCGC 1 cut(s) 536
GluI GCNGC 8 cut(s) 54, 230, 432, 623, 774, 1166, 1359, 1446
HaeIII GGCC 5 cut(s) 25, 434, 575, 1109, 1159
HapII CCGG 3 cut(s) 30, 861, 1325
HhaI GCGC 1 cut(s) 537
Hin1II CATG 5 cut(s) 500, 603, 661, 1172, 1684
Hin6I GCGC 1 cut(s) 535
HinP1I GCGC 1 cut(s) 535
HincII GTYRAC 4 cut(s) 606, 646, 1153, 1300
HindII GTYRAC 4 cut(s) 606, 646, 1153, 1300
HindIII AAGCTT 1 cut(s) 765
HinfI GANTC 9 cut(s) 175, 523, 607, 875, 1030, 1049, 1066, 1589, 1751
HpaII CCGG 3 cut(s) 30, 861, 1325
HphI GGTGA 9 cut(s) 16, 58, 170, 178, 413, 605, 974, 1129, 1281
Hpy166II GTNNAC 6 cut(s) 421, 606, 646, 1153, 1300, 1520
Hpy188I TCNGA 9 cut(s) 132, 372, 522, 880, 1146, 1413, 1479, 1557, 1594
Hpy188III TCNNGA 9 cut(s) 115, 149, 749, 795, 1027, 1034, 1250, 1325, 1379
Hpy8I GTNNAC 6 cut(s) 421, 606, 646, 1153, 1300, 1520
HpyCH4III ACNGT 4 cut(s) 305, 482, 783, 1206
HpyCH4IV ACGT 3 cut(s) 185, 351, 462
HpyCH4V TGCA 8 cut(s) 361, 386, 622, 773, 788, 932, 1165, 1448
HpyF10VI GCNNNNNNNGC 7 cut(s) 22, 440, 692, 773, 1165, 1171, 1442
HpyF3I CTNAG 4 cut(s) 317, 837, 1410, 1566
HpySE526I ACGT 3 cut(s) 185, 351, 462
Hsp92II CATG 5 cut(s) 500, 603, 661, 1172, 1684
HspAI GCGC 1 cut(s) 535
Kpn2I TCCGGA 1 cut(s) 1324
KroI GCCGGC 1 cut(s) 29
KroNI GCCGGC 1 cut(s) 31
Ksp22I TGATCA 1 cut(s) 594
Kzo9I GATC 5 cut(s) 594, 751, 832, 857, 1405
LguI GCTCTTC 2 cut(s) 693, 1479
LmnI GCTCC 1 cut(s) 151
Lsp1109I GCAGC 6 cut(s) 216, 634, 785, 1177, 1345, 1432
LweI GCATC 5 cut(s) 373, 480, 796, 913, 1143
MabI ACCWGGT 2 cut(s) 68, 925
MaeI CTAG 2 cut(s) 810, 1427
MaeII ACGT 3 cut(s) 185, 351, 462
MaeIII GTNAC 2 cut(s) 64, 1287
MalI GATC 5 cut(s) 596, 753, 834, 859, 1407
MboI GATC 5 cut(s) 594, 751, 832, 857, 1405
MfeI CAATTG 1 cut(s) 590
MflI RGATCY 3 cut(s) 832, 857, 1405
MhlI GDGCHC 2 cut(s) 1111, 1176
MlyI GAGTC 4 cut(s) 517, 601, 884, 1760
MmeI TCCRAC 2 cut(s) 810, 1366
Mph1103I ATGCAT 1 cut(s) 388
MroI TCCGGA 1 cut(s) 1324
MroNI GCCGGC 1 cut(s) 29
MroXI GAANNNNTTC 2 cut(s) 954, 1022
MseI TTAA 4 cut(s) 555, 884, 1041, 1512
MslI CAYNNNNRTG 2 cut(s) 728, 1710
MspA1I CMGCKG 1 cut(s) 229
MspCI CTTAAG 1 cut(s) 1511
MspI CCGG 3 cut(s) 30, 861, 1325
MspR9I CCNGG 5 cut(s) 58, 70, 855, 927, 960
MunI CAATTG 1 cut(s) 590
MvaI CCWGG 5 cut(s) 58, 70, 855, 927, 960
MwoI GCNNNNNNNGC 7 cut(s) 22, 440, 692, 773, 1165, 1171, 1442
NaeI GCCGGC 1 cut(s) 31
NdeI CATATG 1 cut(s) 259
NdeII GATC 5 cut(s) 594, 751, 832, 857, 1405
NgoMIV GCCGGC 1 cut(s) 29
NlaIII CATG 5 cut(s) 500, 603, 661, 1172, 1684
NlaIV GGNNCC 7 cut(s) 74, 153, 834, 859, 1108, 1109, 1110
NmeAIII GCCGAG 2 cut(s) 307, 601
NmuCI GTSAC 2 cut(s) 64, 1287
NsbI TGCGCA 1 cut(s) 536
NsiI ATGCAT 1 cut(s) 388
PceI AGGCCT 1 cut(s) 25
PciSI GCTCTTC 2 cut(s) 693, 1479
PdiI GCCGGC 1 cut(s) 31
PdmI GAANNNNTTC 2 cut(s) 954, 1022
PfeI GAWTC 5 cut(s) 175, 1030, 1049, 1066, 1589
PflMI CCANNNNNTGG 1 cut(s) 1385
PkrI GCNGC 8 cut(s) 55, 231, 433, 624, 775, 1167, 1360, 1447
PleI GAGTC 4 cut(s) 517, 601, 883, 1759
PpsI GAGTC 4 cut(s) 517, 601, 883, 1759
Ppu21I YACGTR 1 cut(s) 186
PpuMI RGGWCCY 1 cut(s) 72
Psp124BI GAGCTC 1 cut(s) 1176
Psp1406I AACGTT 1 cut(s) 351
Psp5II RGGWCCY 1 cut(s) 72
Psp6I CCWGG 5 cut(s) 56, 68, 853, 925, 958
PspGI CCWGG 5 cut(s) 56, 68, 853, 925, 958
PspN4I GGNNCC 7 cut(s) 74, 153, 834, 859, 1108, 1109, 1110
PspOMI GGGCCC 1 cut(s) 1107
PspPI GGNCC 4 cut(s) 72, 819, 1107, 1108
PspPPI RGGWCCY 1 cut(s) 72
PsrI GAACNNNNNNTAC 4 cut(s) 359, 391, 1623, 1655
PsuI RGATCY 3 cut(s) 832, 857, 1405
RsaI GTAC 1 cut(s) 1521
RsaNI GTAC 1 cut(s) 1520
RseI CAYNNNNRTG 2 cut(s) 728, 1710
SacI GAGCTC 1 cut(s) 1176
SapI GCTCTTC 2 cut(s) 693, 1479
SaqAI TTAA 4 cut(s) 555, 884, 1041, 1512
SatI GCNGC 8 cut(s) 54, 230, 432, 623, 774, 1166, 1359, 1446
Sau3AI GATC 5 cut(s) 594, 751, 832, 857, 1405
Sau96I GGNCC 4 cut(s) 72, 819, 1107, 1108
SchI GAGTC 4 cut(s) 517, 601, 884, 1760
ScrFI CCNGG 5 cut(s) 58, 70, 855, 927, 960
SduI GDGCHC 2 cut(s) 1111, 1176
SexAI ACCWGGT 2 cut(s) 68, 925
SfaNI GCATC 5 cut(s) 373, 480, 796, 913, 1143
SfcI CTRYAG 2 cut(s) 444, 481
SinI GGWCC 2 cut(s) 72, 819
SmiMI CAYNNNNRTG 2 cut(s) 728, 1710
SmlI CTYRAG 1 cut(s) 1511
SmoI CTYRAG 1 cut(s) 1511
SnaBI TACGTA 1 cut(s) 186
SseBI AGGCCT 1 cut(s) 25
SsiI CCGC 5 cut(s) 54, 227, 431, 1262, 1523
SspI AATATT 1 cut(s) 313
SspMI CTAG 2 cut(s) 810, 1427
SstI GAGCTC 1 cut(s) 1176
StuI AGGCCT 1 cut(s) 25
StyD4I CCNGG 5 cut(s) 56, 68, 853, 925, 958
StyI CCWWGG 1 cut(s) 1617
TaaI ACNGT 4 cut(s) 305, 482, 783, 1206
TaiI ACGT 3 cut(s) 188, 354, 465
TaqI TCGA 3 cut(s) 234, 757, 804
TaqII GACCGA 2 cut(s) 807, 1589
TauI GCSGC 2 cut(s) 56, 434
TfiI GAWTC 5 cut(s) 175, 1030, 1049, 1066, 1589
Tru1I TTAA 4 cut(s) 555, 884, 1041, 1512
Tru9I TTAA 4 cut(s) 555, 884, 1041, 1512
TscAI CASTG 1 cut(s) 1211
TseFI GTSAC 2 cut(s) 64, 1287
TseI GCWGC 6 cut(s) 229, 622, 773, 1165, 1358, 1445
Tsp45I GTSAC 2 cut(s) 64, 1287
TspGWI ACGGA 1 cut(s) 1747
TspRI CASTG 1 cut(s) 1211
Van91I CCANNNNNTGG 1 cut(s) 1385
Vha464I CTTAAG 1 cut(s) 1511
VpaK11BI GGWCC 2 cut(s) 72, 819
XapI RAATTY 3 cut(s) 1019, 1236, 1414
XmnI GAANNNNTTC 2 cut(s) 954, 1022
XspI CTAG 2 cut(s) 810, 1427
Zsp2I ATGCAT 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.