Rh3CG293000

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000073
Physical Location & Seq
Forward (+)
29841655 .. 29848417
6763 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG293000.1

Sequence Viewer

Length: 1722 bp
ATGGGCTGCAGTGTTTCCATCCATCCGTGGCCACCTTTTAGCCGTCTTGAAGATATTCCAGTCCATCTGATCACCTTTTGGGTGCAAGTCCATGGCCTCCCTCCTGCGTTTATGACTGAAGAAAATGCTCGTTTGATTGGTGCTCAAATTGGACGAGTTGTTGCAGTGGATGATCCTCATTTGTTGGAGGTCTGGCGAGGGTTTATGCGTTTGTGGGTTGAACTTGACTCCAGGGCCCCTTTCTTACCTGGGTTCTGGTTCAATCGGTCTACCGAAGTAGCAGCCTGGGCCGAGATTCAGTATGAACGTCTCTCTGATTGGTGTTTCATATGTGGTCGCCTTGGTCACACCATATCTCACTGTCATATGTTGCGCCATCCCTCGGCGGATCGAATGGGCACGTGGAATGGTATTTCTTCCCCCCGTCGTTTTCCTCCGGACATCCAGCGACCGGTGGAGCATTTTCCAGCTCATGATACCCGGCGGAACCGGTGGGCGGATCGTCGTGCTCCGTCGACAACTACGGCCATGCAGTTCCCCAATCTCTCTCAGCCGTGGATTCCATTGCCGGTGCCCGGTGACCTAGTCCTCGCTCACCCTATGCAAGGCCGCTGGCAGCCAACCACTACAGATCCTCCACTTGTTGAGTTCCTGCCTGACACGTCAAAATCTCTAGAACCAGCTCCCACAGTTCCTTCGTCGAGGGGTAAGGGGAAGGTTGACGAGTGGTCAACTACTCTCAACTCTATCTCTTCAGATATTCCAATCCCCTATGACGTGTTGGACATGCAGCTTGCCATATCACTTTCCCAGGTTGAGCTGGCTGATGCTGAGATGGCAGATCCCCAGGCCCCTTTGGGTCACATAATGGAAGATGCACAAGCTCAACAGGCCGCACTGTCTTCTCTTTTACAATTAAGCCCAATTTCGGATCCGGTTTTACTTCAACAAATATTGGCCCATCATGAAGCGGTTCTTGACCCAACTTTGTTGACTGATGACCCCGATATGTCCCTCTTCTCTGCCAGTAACAATCCTCCACCACACAGCTCTTATCCATCTCTTTATCCTCCATCTCCTACTCTACCTCCGTTCCCACTTTTCACCAACCCACAAATCAATCCACTCCTCCATCCTACTCATGATGTGCCCCCTCTGCTCCCAGTTGGCTCTCTGACTATCTTGGCTCATCACTTCCGTCAACTCCACCTCAAAAGGAGATTACAAGAGATAGTCGATGAATCCTTCCACCAGGAAAAGTGCCACAGCTCAGAGTATGTCGTTGACGAGCCAATTTCACCTTCCTCTACTCTTGCTTCTCGACCCATTCCTGCCCCAAAGCAACCCCTTTCTCCGGTGGGCTCTTCCTCTACTGCCGCTGGCCGTGGTCGTGGTCGTCGCGGTAGGCCTCGCAAGTCGGCTATTTCAGTACCACCCCTAGTGCTTTTGGAGGATGCAATACTAAACCAAATTCTCGGAAGTACGACTTCAGCCGTTCTGAGTCCTAAGCATCCAGAAAATGACTTGTCTCTGTCATCCCAAGAAGCAATGCTGACCTCTTCTCAAGAGGCATCTGTTGGGGATATATTGAGGGACCTTGGGCTTTTCGGCGACAGCAAAGTTGAGATCGGAGAGGAGATTGAAGCAGAGGAGCGGCTCTGGTGGCTTCTGGGCGTGAAAGGGTCCGACGGGTGTTGGTACGAAGGTTTTGATTGGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4 zf-RING_2

Protein Analysis

573

Amino Acids

63.67

Weight (kDa)

5.39

Isoelectric Point (pI)

57.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 93 - 122 2.5e-08 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 571
AccBSI CCGCTC 1 cut(s) 1654
AccI GTMKAC 2 cut(s) 269, 515
AccII CGCG 1 cut(s) 1401
AccIII TCCGGA 1 cut(s) 436
AciI CCGC 9 cut(s) 386, 484, 497, 610, 894, 971, 1377, 1401, 1654
AclWI GGATC 7 cut(s) 167, 396, 507, 626, 836, 926, 939
AcoI YGGCCR 3 cut(s) 29, 525, 1381
AcsI RAATTY 1 cut(s) 1470
AcuI CTGAAG 3 cut(s) 138, 738, 1473
AcvI CACGTG 1 cut(s) 402
AfaI GTAC 3 cut(s) 1431, 1483, 1700
AfiI CCNNNNNNNGG 7 cut(s) 382, 451, 496, 575, 605, 928, 1354
AflIII ACRYGT 2 cut(s) 660, 777
AgeI ACCGGT 2 cut(s) 451, 489
AgsI TTSAA 5 cut(s) 50, 221, 262, 947, 1643
AhdI GACNNNNNGTC 1 cut(s) 727
AjiI CACGTC 2 cut(s) 663, 778
AjnI CCWGG 6 cut(s) 230, 247, 284, 810, 846, 1251
AjuI GAANNNNNNNTTGG 2 cut(s) 1285, 1317
AluBI AGCT 7 cut(s) 470, 683, 793, 820, 884, 1050, 1269
AluI AGCT 7 cut(s) 470, 683, 793, 820, 884, 1050, 1269
Alw21I GWGCWC 2 cut(s) 145, 511
Alw26I GTCTC 2 cut(s) 314, 1533
AlwI GGATC 7 cut(s) 167, 396, 507, 626, 836, 926, 939
Aor13HI TCCGGA 1 cut(s) 436
ApaI GGGCCC 1 cut(s) 238
ApeKI GCWGC 4 cut(s) 6, 281, 616, 790
ApoI RAATTY 1 cut(s) 1470
AsiGI ACCGGT 2 cut(s) 451, 489
Asp700I GAANNNNTTC 2 cut(s) 54, 972
AspLEI GCGC 1 cut(s) 375
AspS9I GGNCC 7 cut(s) 234, 235, 288, 850, 958, 1594, 1683
AsuC2I CCSGG 2 cut(s) 481, 576
AsuHPI GGTGA 5 cut(s) 64, 587, 590, 1096, 1290
AvaII GGWCC 2 cut(s) 1594, 1683
BaeGI GKGCMC 4 cut(s) 238, 401, 576, 1152
BaeI ACNNNNGTAYC 1 cut(s) 1690
BalI TGGCCA 1 cut(s) 31
BamHI GGATCC 1 cut(s) 931
BanI GGYRCC 1 cut(s) 571
BanII GRGCYC 2 cut(s) 238, 1364
BbrPI CACGTG 1 cut(s) 402
BbsI GAAGAC 1 cut(s) 894
Bbv12I GWGCWC 2 cut(s) 145, 511
BbvI GCAGC 3 cut(s) 293, 628, 802
BccI CCATC 9 cut(s) 26, 30, 72, 384, 829, 969, 1066, 1081, 1140
BceAI ACGGC 5 cut(s) 27, 538, 540, 1368, 1478
BciT130I CCWGG 6 cut(s) 232, 249, 286, 812, 848, 1253
BclI TGATCA 1 cut(s) 69
BcnI CCSGG 2 cut(s) 481, 576
BcoDI GTCTC 2 cut(s) 314, 1533
BfaI CTAG 3 cut(s) 584, 674, 1439
BfmI CTRYAG 2 cut(s) 7, 627
BisI GCNGC 8 cut(s) 7, 282, 610, 617, 791, 894, 1377, 1655
BlsI GCNGC 8 cut(s) 8, 283, 611, 618, 792, 895, 1378, 1656
Bme1390I CCNGG 8 cut(s) 232, 249, 286, 481, 576, 812, 848, 1253
Bme18I GGWCC 2 cut(s) 1594, 1683
BmeRI GACNNNNNGTC 1 cut(s) 727
BmgBI CACGTC 2 cut(s) 663, 778
BmgT120I GGNCC 7 cut(s) 234, 235, 288, 850, 958, 1594, 1683
BmiI GGNNCC 8 cut(s) 236, 237, 488, 573, 852, 933, 1595, 1684
BmrFI CCNGG 8 cut(s) 232, 249, 286, 481, 576, 812, 848, 1253
BmrI ACTGGG 1 cut(s) 1157
BmsI GCATC 5 cut(s) 817, 865, 1444, 1519, 1580
BmuI ACTGGG 1 cut(s) 1157
BpiI GAAGAC 1 cut(s) 894
BpmI CTGGAG 1 cut(s) 214
Bpu10I CCTNAGC 1 cut(s) 1506
BpuEI CTTGAG 1 cut(s) 1548
BpuMI CCSGG 2 cut(s) 481, 576
BsaAI YACGTR 1 cut(s) 402
BsaWI WCCGGW 5 cut(s) 436, 451, 489, 934, 1354
BsaXI ACNNNNNCTCC 4 cut(s) 619, 649, 1072, 1102
Bsc4I CCNNNNNNNGG 7 cut(s) 382, 451, 496, 575, 605, 928, 1354
Bse118I RCCGGY 3 cut(s) 451, 489, 568
Bse1I ACTGG 3 cut(s) 59, 1026, 1163
Bse3DI GCAATG 2 cut(s) 563, 1554
BseAI TCCGGA 1 cut(s) 436
BseBI CCWGG 6 cut(s) 232, 249, 286, 812, 848, 1253
BseGI GGATG 9 cut(s) 18, 22, 175, 376, 441, 1132, 1459, 1510, 1535
BseLI CCNNNNNNNGG 7 cut(s) 382, 451, 496, 575, 605, 928, 1354
BseMI GCAATG 2 cut(s) 563, 1554
BseMII CTCAG 4 cut(s) 563, 822, 1284, 1490
BseNI ACTGG 3 cut(s) 59, 1026, 1163
BseRI GAGGAG 3 cut(s) 1118, 1649, 1664
BseSI GKGCMC 4 cut(s) 238, 401, 576, 1152
BseXI GCAGC 3 cut(s) 293, 628, 802
Bsh1236I CGCG 1 cut(s) 1401
Bsh1285I CGRYCG 1 cut(s) 452
BshNI GGYRCC 1 cut(s) 571
BshTI ACCGGT 2 cut(s) 451, 489
BsiEI CGRYCG 1 cut(s) 452
BsiHKAI GWGCWC 2 cut(s) 145, 511
BsiSI CCGG 8 cut(s) 437, 452, 481, 490, 569, 576, 935, 1355
BslFI GGGAC 2 cut(s) 997, 1607
BslI CCNNNNNNNGG 7 cut(s) 382, 451, 496, 575, 605, 928, 1354
BsmAI GTCTC 2 cut(s) 314, 1533
BsmBI CGTCTC 1 cut(s) 314
BsmFI GGGAC 2 cut(s) 997, 1607
Bsp120I GGGCCC 1 cut(s) 234
Bsp1286I GDGCHC 7 cut(s) 145, 238, 401, 511, 576, 1152, 1364
Bsp13I TCCGGA 1 cut(s) 436
Bsp143I GATC 8 cut(s) 69, 172, 388, 499, 631, 841, 931, 1626
Bsp19I CCATGG 1 cut(s) 91
BspACI CCGC 9 cut(s) 386, 484, 497, 610, 894, 971, 1377, 1401, 1654
BspCNI CTCAG 4 cut(s) 562, 823, 1283, 1491
BspEI TCCGGA 1 cut(s) 436
BspFNI CGCG 1 cut(s) 1401
BspHI TCATGA 3 cut(s) 472, 964, 1141
BspLI GGNNCC 8 cut(s) 236, 237, 488, 573, 852, 933, 1595, 1684
BspMAI CTGCAG 1 cut(s) 11
BspPI GGATC 7 cut(s) 167, 396, 507, 626, 836, 926, 939
BspQI GCTCTTC 1 cut(s) 1369
BspT107I GGYRCC 1 cut(s) 571
BsrBI CCGCTC 1 cut(s) 1654
BsrDI GCAATG 2 cut(s) 563, 1554
BsrFI RCCGGY 3 cut(s) 451, 489, 568
BsrI ACTGG 3 cut(s) 59, 1026, 1163
BssAI RCCGGY 3 cut(s) 451, 489, 568
BssMI GATC 8 cut(s) 69, 172, 388, 499, 631, 841, 931, 1626
BssT1I CCWWGG 3 cut(s) 91, 340, 1597
Bst2UI CCWGG 6 cut(s) 232, 249, 286, 812, 848, 1253
Bst4CI ACNGT 3 cut(s) 362, 691, 900
Bst6I CTCTTC 4 cut(s) 757, 1022, 1369, 1564
BstBAI YACGTR 1 cut(s) 402
BstC8I GCNNGC 4 cut(s) 614, 795, 822, 1381
BstDEI CTNAG 5 cut(s) 549, 831, 1270, 1499, 1506
BstDSI CCRYGG 4 cut(s) 26, 91, 554, 1384
BstEII GGTNACC 1 cut(s) 578
BstENI CCTNNNNNAGG 1 cut(s) 603
BstF5I GGATG 9 cut(s) 18, 22, 175, 376, 441, 1132, 1459, 1510, 1535
BstFNI CGCG 1 cut(s) 1401
BstHHI GCGC 1 cut(s) 375
BstKTI GATC 8 cut(s) 72, 175, 391, 502, 634, 844, 934, 1629
BstMAI GTCTC 2 cut(s) 314, 1533
BstMBI GATC 8 cut(s) 69, 172, 388, 499, 631, 841, 931, 1626
BstMCI CGRYCG 1 cut(s) 452
BstMWI GCNNNNNNNGC 5 cut(s) 287, 836, 890, 1156, 1663
BstNI CCWGG 6 cut(s) 232, 249, 286, 812, 848, 1253
BstNSI RCATGY 1 cut(s) 790
BstPI GGTNACC 1 cut(s) 578
BstSCI CCNGG 8 cut(s) 230, 247, 284, 479, 574, 810, 846, 1251
BstSFI CTRYAG 2 cut(s) 7, 627
BstSLI GKGCMC 4 cut(s) 238, 401, 576, 1152
BstUI CGCG 1 cut(s) 1401
BstV1I GCAGC 3 cut(s) 293, 628, 802
BstV2I GAAGAC 1 cut(s) 894
BstX2I RGATCY 3 cut(s) 631, 841, 931
BstYI RGATCY 3 cut(s) 631, 841, 931
BtgI CCRYGG 4 cut(s) 26, 91, 554, 1384
BtrI CACGTC 2 cut(s) 663, 778
BtsCI GGATG 9 cut(s) 18, 22, 175, 376, 441, 1132, 1459, 1510, 1535
BtsI GCAGTG 2 cut(s) 16, 171
BtsIMutI CAGTG 4 cut(s) 16, 171, 358, 896
Cac8I GCNNGC 4 cut(s) 614, 795, 822, 1381
CciI TCATGA 3 cut(s) 472, 964, 1141
CfoI GCGC 1 cut(s) 375
Cfr10I RCCGGY 3 cut(s) 451, 489, 568
Cfr13I GGNCC 7 cut(s) 234, 235, 288, 850, 958, 1594, 1683
Csp6I GTAC 3 cut(s) 1430, 1482, 1699
CspAI ACCGGT 2 cut(s) 451, 489
CviAII CATG 6 cut(s) 92, 473, 529, 787, 965, 1142
CviQI GTAC 3 cut(s) 1430, 1482, 1699
DdeI CTNAG 5 cut(s) 549, 831, 1270, 1499, 1506
DpnI GATC 8 cut(s) 71, 174, 390, 501, 633, 843, 933, 1628
DpnII GATC 8 cut(s) 69, 172, 388, 499, 631, 841, 931, 1626
DriI GACNNNNNGTC 1 cut(s) 727
EaeI YGGCCR 3 cut(s) 29, 525, 1381
Eam1104I CTCTTC 4 cut(s) 757, 1022, 1369, 1564
Eam1105I GACNNNNNGTC 1 cut(s) 727
EarI CTCTTC 4 cut(s) 757, 1022, 1369, 1564
EciI GGCGGA 3 cut(s) 401, 499, 512
Eco130I CCWWGG 3 cut(s) 91, 340, 1597
Eco147I AGGCCT 1 cut(s) 1408
Eco24I GRGCYC 2 cut(s) 238, 1364
Eco47I GGWCC 2 cut(s) 1594, 1683
Eco57I CTGAAG 3 cut(s) 138, 738, 1473
Eco72I CACGTG 1 cut(s) 402
Eco91I GGTNACC 1 cut(s) 578
EcoNI CCTNNNNNAGG 1 cut(s) 603
EcoO109I RGGNCCY 4 cut(s) 234, 235, 850, 1594
EcoO65I GGTNACC 1 cut(s) 578
EcoRII CCWGG 6 cut(s) 230, 247, 284, 810, 846, 1251
EcoT14I CCWWGG 3 cut(s) 91, 340, 1597
EcoT38I GRGCYC 2 cut(s) 238, 1364
ErhI CCWWGG 3 cut(s) 91, 340, 1597
Esp3I CGTCTC 1 cut(s) 314
FaeI CATG 6 cut(s) 95, 476, 532, 790, 968, 1145
FalI AAGNNNNNCTT 4 cut(s) 960, 992, 1471, 1503
FaqI GGGAC 2 cut(s) 997, 1607
FatI CATG 6 cut(s) 91, 472, 528, 786, 964, 1141
FauNDI CATATG 2 cut(s) 329, 366
FbaI TGATCA 1 cut(s) 69
FblI GTMKAC 2 cut(s) 269, 515
Fnu4HI GCNGC 8 cut(s) 7, 282, 610, 617, 791, 894, 1377, 1655
FokI GGATG 9 cut(s) 5, 9, 182, 363, 428, 1119, 1466, 1497, 1522
FriOI GRGCYC 2 cut(s) 238, 1364
Fsp4HI GCNGC 8 cut(s) 7, 282, 610, 617, 791, 894, 1377, 1655
FspBI CTAG 3 cut(s) 584, 674, 1439
GlaI GCGC 1 cut(s) 374
GluI GCNGC 8 cut(s) 7, 282, 610, 617, 791, 894, 1377, 1655
GsuI CTGGAG 1 cut(s) 214
HapII CCGG 8 cut(s) 437, 452, 481, 490, 569, 576, 935, 1355
HhaI GCGC 1 cut(s) 375
Hin1II CATG 6 cut(s) 95, 476, 532, 790, 968, 1145
Hin6I GCGC 1 cut(s) 373
HinP1I GCGC 1 cut(s) 373
HincII GTYRAC 6 cut(s) 516, 721, 732, 993, 1202, 1285
HindII GTYRAC 6 cut(s) 516, 721, 732, 993, 1202, 1285
HinfI GANTC 5 cut(s) 227, 295, 559, 1241, 1501
HpaII CCGG 8 cut(s) 437, 452, 481, 490, 569, 576, 935, 1355
HphI GGTGA 5 cut(s) 64, 587, 590, 1096, 1290
Hpy166II GTNNAC 7 cut(s) 270, 516, 721, 732, 993, 1202, 1285
Hpy8I GTNNAC 7 cut(s) 270, 516, 721, 732, 993, 1202, 1285
Hpy99I CGWCG 6 cut(s) 429, 507, 517, 703, 1401, 1691
HpyAV CCTTC 5 cut(s) 705, 709, 1255, 1311, 1697
HpyCH4III ACNGT 3 cut(s) 362, 691, 900
HpyCH4IV ACGT 4 cut(s) 307, 401, 662, 777
HpyCH4V TGCA 8 cut(s) 9, 85, 164, 532, 604, 790, 878, 1457
HpyF10VI GCNNNNNNNGC 5 cut(s) 287, 836, 890, 1156, 1663
HpyF3I CTNAG 5 cut(s) 549, 831, 1270, 1499, 1506
HpySE526I ACGT 4 cut(s) 307, 401, 662, 777
Hsp92II CATG 6 cut(s) 95, 476, 532, 790, 968, 1145
HspAI GCGC 1 cut(s) 373
Kpn2I TCCGGA 1 cut(s) 436
Ksp22I TGATCA 1 cut(s) 69
Kzo9I GATC 8 cut(s) 69, 172, 388, 499, 631, 841, 931, 1626
LguI GCTCTTC 1 cut(s) 1369
LmnI GCTCC 5 cut(s) 457, 514, 688, 1164, 1651
Lsp1109I GCAGC 3 cut(s) 293, 628, 802
LweI GCATC 5 cut(s) 817, 865, 1444, 1519, 1580
MaeI CTAG 3 cut(s) 584, 674, 1439
MaeII ACGT 4 cut(s) 307, 401, 662, 777
MaeIII GTNAC 4 cut(s) 344, 578, 860, 1028
MalI GATC 8 cut(s) 71, 174, 390, 501, 633, 843, 933, 1628
MbiI CCGCTC 1 cut(s) 1654
MboI GATC 8 cut(s) 69, 172, 388, 499, 631, 841, 931, 1626
MboII GAAGA 9 cut(s) 62, 131, 408, 744, 884, 894, 1009, 1356, 1551
MflI RGATCY 3 cut(s) 631, 841, 931
MhlI GDGCHC 7 cut(s) 145, 238, 401, 511, 576, 1152, 1364
MlsI TGGCCA 1 cut(s) 31
MluCI AATT 5 cut(s) 147, 914, 924, 1293, 1470
MluNI TGGCCA 1 cut(s) 31
MlyI GAGTC 2 cut(s) 221, 1510
MmeI TCCRAC 3 cut(s) 165, 762, 1710
Mox20I TGGCCA 1 cut(s) 31
MroI TCCGGA 1 cut(s) 436
MroXI GAANNNNTTC 2 cut(s) 54, 972
MscI TGGCCA 1 cut(s) 31
MseI TTAA 1 cut(s) 917
Msp20I TGGCCA 1 cut(s) 31
MspA1I CMGCKG 2 cut(s) 612, 1379
MspI CCGG 8 cut(s) 437, 452, 481, 490, 569, 576, 935, 1355
MspR9I CCNGG 8 cut(s) 232, 249, 286, 481, 576, 812, 848, 1253
MvaI CCWGG 6 cut(s) 232, 249, 286, 812, 848, 1253
MvnI CGCG 1 cut(s) 1401
MwoI GCNNNNNNNGC 5 cut(s) 287, 836, 890, 1156, 1663
NciI CCSGG 2 cut(s) 481, 576
NcoI CCATGG 1 cut(s) 91
NdeI CATATG 2 cut(s) 329, 366
NdeII GATC 8 cut(s) 69, 172, 388, 499, 631, 841, 931, 1626
NlaIII CATG 6 cut(s) 95, 476, 532, 790, 968, 1145
NlaIV GGNNCC 8 cut(s) 236, 237, 488, 573, 852, 933, 1595, 1684
NmeAIII GCCGAG 2 cut(s) 316, 362
NmuCI GTSAC 3 cut(s) 344, 578, 860
NspI RCATGY 1 cut(s) 790
PagI TCATGA 3 cut(s) 472, 964, 1141
PceI AGGCCT 1 cut(s) 1408
PciSI GCTCTTC 1 cut(s) 1369
PdmI GAANNNNTTC 2 cut(s) 54, 972
PfeI GAWTC 3 cut(s) 295, 559, 1241
PflFI GACNNNGTC 1 cut(s) 584
PinAI ACCGGT 2 cut(s) 451, 489
PkrI GCNGC 8 cut(s) 8, 283, 611, 618, 792, 895, 1378, 1656
PleI GAGTC 2 cut(s) 221, 1509
PmaCI CACGTG 1 cut(s) 402
PmlI CACGTG 1 cut(s) 402
PpsI GAGTC 2 cut(s) 221, 1509
Ppu21I YACGTR 1 cut(s) 402
PpuMI RGGWCCY 1 cut(s) 1594
Psp5II RGGWCCY 1 cut(s) 1594
Psp6I CCWGG 6 cut(s) 230, 247, 284, 810, 846, 1251
PspCI CACGTG 1 cut(s) 402
PspEI GGTNACC 1 cut(s) 578
PspGI CCWGG 6 cut(s) 230, 247, 284, 810, 846, 1251
PspN4I GGNNCC 8 cut(s) 236, 237, 488, 573, 852, 933, 1595, 1684
PspOMI GGGCCC 1 cut(s) 234
PspPI GGNCC 7 cut(s) 234, 235, 288, 850, 958, 1594, 1683
PspPPI RGGWCCY 1 cut(s) 1594
PstI CTGCAG 1 cut(s) 11
PsuI RGATCY 3 cut(s) 631, 841, 931
PsyI GACNNNGTC 1 cut(s) 584
RsaI GTAC 3 cut(s) 1431, 1483, 1700
RsaNI GTAC 3 cut(s) 1430, 1482, 1699
SalI GTCGAC 1 cut(s) 514
SapI GCTCTTC 1 cut(s) 1369
SaqAI TTAA 1 cut(s) 917
SatI GCNGC 8 cut(s) 7, 282, 610, 617, 791, 894, 1377, 1655
Sau3AI GATC 8 cut(s) 69, 172, 388, 499, 631, 841, 931, 1626
Sau96I GGNCC 7 cut(s) 234, 235, 288, 850, 958, 1594, 1683
SchI GAGTC 2 cut(s) 221, 1510
ScrFI CCNGG 8 cut(s) 232, 249, 286, 481, 576, 812, 848, 1253
SduI GDGCHC 7 cut(s) 145, 238, 401, 511, 576, 1152, 1364
SfaNI GCATC 5 cut(s) 817, 865, 1444, 1519, 1580
SfcI CTRYAG 2 cut(s) 7, 627
SinI GGWCC 2 cut(s) 1594, 1683
SmlI CTYRAG 1 cut(s) 1563
SmoI CTYRAG 1 cut(s) 1563
Sse9I AATT 5 cut(s) 147, 914, 924, 1293, 1470
SseBI AGGCCT 1 cut(s) 1408
SsiI CCGC 9 cut(s) 386, 484, 497, 610, 894, 971, 1377, 1401, 1654
SspI AATATT 1 cut(s) 954
SspMI CTAG 3 cut(s) 584, 674, 1439
StuI AGGCCT 1 cut(s) 1408
StyD4I CCNGG 8 cut(s) 230, 247, 284, 479, 574, 810, 846, 1251
StyI CCWWGG 3 cut(s) 91, 340, 1597
TaaI ACNGT 3 cut(s) 362, 691, 900
TaiI ACGT 4 cut(s) 310, 404, 665, 780
TaqI TCGA 5 cut(s) 391, 515, 701, 1236, 1321
TaqII GACCGA 1 cut(s) 255
TasI AATT 5 cut(s) 147, 914, 924, 1293, 1470
TauI GCSGC 4 cut(s) 612, 896, 1379, 1657
TfiI GAWTC 3 cut(s) 295, 559, 1241
Tru1I TTAA 1 cut(s) 917
Tru9I TTAA 1 cut(s) 917
TscAI CASTG 4 cut(s) 16, 171, 365, 903
TseFI GTSAC 3 cut(s) 344, 578, 860
TseI GCWGC 4 cut(s) 6, 281, 616, 790
Tsp45I GTSAC 3 cut(s) 344, 578, 860
TspDTI ATGAA 4 cut(s) 316, 318, 981, 1254
TspGWI ACGGA 4 cut(s) 15, 501, 1080, 1187
TspRI CASTG 4 cut(s) 16, 171, 365, 903
Tth111I GACNNNGTC 1 cut(s) 584
VpaK11BI GGWCC 2 cut(s) 1594, 1683
XagI CCTNNNNNAGG 1 cut(s) 603
XapI RAATTY 1 cut(s) 1470
XbaI TCTAGA 1 cut(s) 673
XceI RCATGY 1 cut(s) 790
XmiI GTMKAC 2 cut(s) 269, 515
XmnI GAANNNNTTC 2 cut(s) 54, 972
XspI CTAG 3 cut(s) 584, 674, 1439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.