Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 32 - 73 | 8.4e-11 | Zinc knuckle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 41 |
| AcoI | YGGCCR | 1 cut(s) | 202 |
| AcsI | RAATTY | 1 cut(s) | 161 |
| AfaI | GTAC | 1 cut(s) | 61 |
| AgsI | TTSAA | 4 cut(s) | 47, 166, 173, 221 |
| AhlI | ACTAGT | 1 cut(s) | 296 |
| AjnI | CCWGG | 1 cut(s) | 152 |
| AoxI | GGCC | 3 cut(s) | 104, 202, 260 |
| ApoI | RAATTY | 1 cut(s) | 161 |
| AspS9I | GGNCC | 1 cut(s) | 79 |
| AsuHPI | GGTGA | 1 cut(s) | 29 |
| AvaII | GGWCC | 1 cut(s) | 79 |
| BccI | CCATC | 2 cut(s) | 134, 233 |
| BceAI | ACGGC | 1 cut(s) | 189 |
| BciT130I | CCWGG | 1 cut(s) | 154 |
| BclI | TGATCA | 1 cut(s) | 291 |
| BcuI | ACTAGT | 1 cut(s) | 296 |
| BfaI | CTAG | 2 cut(s) | 99, 297 |
| Bme1390I | CCNGG | 1 cut(s) | 154 |
| Bme18I | GGWCC | 1 cut(s) | 79 |
| BmgT120I | GGNCC | 1 cut(s) | 79 |
| BmiI | GGNNCC | 1 cut(s) | 80 |
| BmrFI | CCNGG | 1 cut(s) | 154 |
| BmsI | GCATC | 1 cut(s) | 85 |
| BsaJI | CCNNGG | 2 cut(s) | 153, 257 |
| BseBI | CCWGG | 1 cut(s) | 154 |
| BseDI | CCNNGG | 2 cut(s) | 153, 257 |
| BseGI | GGATG | 2 cut(s) | 225, 294 |
| BshFI | GGCC | 3 cut(s) | 106, 204, 262 |
| BslFI | GGGAC | 1 cut(s) | 132 |
| BsmFI | GGGAC | 1 cut(s) | 132 |
| BsnI | GGCC | 3 cut(s) | 106, 204, 262 |
| Bsp143I | GATC | 1 cut(s) | 291 |
| BspACI | CCGC | 1 cut(s) | 41 |
| BspANI | GGCC | 3 cut(s) | 106, 204, 262 |
| BspLI | GGNNCC | 1 cut(s) | 80 |
| BssECI | CCNNGG | 2 cut(s) | 153, 257 |
| BssMI | GATC | 1 cut(s) | 291 |
| BssT1I | CCWWGG | 1 cut(s) | 257 |
| Bst2UI | CCWGG | 1 cut(s) | 154 |
| Bst4CI | ACNGT | 1 cut(s) | 200 |
| Bst6I | CTCTTC | 1 cut(s) | 132 |
| BstF5I | GGATG | 2 cut(s) | 225, 294 |
| BstKTI | GATC | 1 cut(s) | 294 |
| BstMBI | GATC | 1 cut(s) | 291 |
| BstNI | CCWGG | 1 cut(s) | 154 |
| BstSCI | CCNGG | 1 cut(s) | 152 |
| BsuRI | GGCC | 3 cut(s) | 106, 204, 262 |
| BtsCI | GGATG | 2 cut(s) | 225, 294 |
| Cfr13I | GGNCC | 1 cut(s) | 79 |
| Csp6I | GTAC | 1 cut(s) | 60 |
| CviAII | CATG | 1 cut(s) | 88 |
| CviJI | RGCY | 3 cut(s) | 106, 204, 262 |
| CviKI_1 | RGCY | 3 cut(s) | 106, 204, 262 |
| CviQI | GTAC | 1 cut(s) | 60 |
| DpnI | GATC | 1 cut(s) | 293 |
| DpnII | GATC | 1 cut(s) | 291 |
| EaeI | YGGCCR | 1 cut(s) | 202 |
| Eam1104I | CTCTTC | 1 cut(s) | 132 |
| EarI | CTCTTC | 1 cut(s) | 132 |
| Eco130I | CCWWGG | 1 cut(s) | 257 |
| Eco47I | GGWCC | 1 cut(s) | 79 |
| EcoRI | GAATTC | 1 cut(s) | 161 |
| EcoRII | CCWGG | 1 cut(s) | 152 |
| EcoT14I | CCWWGG | 1 cut(s) | 257 |
| ErhI | CCWWGG | 1 cut(s) | 257 |
| FaeI | CATG | 1 cut(s) | 91 |
| FaiI | YATR | 2 cut(s) | 89, 279 |
| FaqI | GGGAC | 1 cut(s) | 132 |
| FatI | CATG | 1 cut(s) | 87 |
| FauI | CCCGC | 1 cut(s) | 48 |
| FbaI | TGATCA | 1 cut(s) | 291 |
| FokI | GGATG | 2 cut(s) | 212, 301 |
| FspBI | CTAG | 2 cut(s) | 99, 297 |
| HaeIII | GGCC | 3 cut(s) | 106, 204, 262 |
| Hin1II | CATG | 1 cut(s) | 91 |
| HphI | GGTGA | 1 cut(s) | 29 |
| Hpy188III | TCNNGA | 2 cut(s) | 183, 229 |
| HpyAV | CCTTC | 2 cut(s) | 50, 83 |
| HpyCH4III | ACNGT | 1 cut(s) | 200 |
| Hsp92II | CATG | 1 cut(s) | 91 |
| Ksp22I | TGATCA | 1 cut(s) | 291 |
| Kzo9I | GATC | 1 cut(s) | 291 |
| LpnPI | CCDG | 5 cut(s) | 139, 166, 242, 254, 276 |
| LweI | GCATC | 1 cut(s) | 85 |
| MaeI | CTAG | 2 cut(s) | 99, 297 |
| MalI | GATC | 1 cut(s) | 293 |
| MboI | GATC | 1 cut(s) | 291 |
| MboII | GAAGA | 2 cut(s) | 119, 263 |
| MluCI | AATT | 1 cut(s) | 161 |
| MnlI | CCTC | 3 cut(s) | 96, 160, 259 |
| MslI | CAYNNNNRTG | 1 cut(s) | 29 |
| MspR9I | CCNGG | 1 cut(s) | 154 |
| MvaI | CCWGG | 1 cut(s) | 154 |
| NdeII | GATC | 1 cut(s) | 291 |
| NlaIII | CATG | 1 cut(s) | 91 |
| NlaIV | GGNNCC | 1 cut(s) | 80 |
| Psp6I | CCWGG | 1 cut(s) | 152 |
| PspGI | CCWGG | 1 cut(s) | 152 |
| PspN4I | GGNNCC | 1 cut(s) | 80 |
| PspPI | GGNCC | 1 cut(s) | 79 |
| RsaI | GTAC | 1 cut(s) | 61 |
| RsaNI | GTAC | 1 cut(s) | 60 |
| RseI | CAYNNNNRTG | 1 cut(s) | 29 |
| Sau3AI | GATC | 1 cut(s) | 291 |
| Sau96I | GGNCC | 1 cut(s) | 79 |
| ScrFI | CCNGG | 1 cut(s) | 154 |
| SetI | ASST | 2 cut(s) | 61, 179 |
| SfaNI | GCATC | 1 cut(s) | 85 |
| SinI | GGWCC | 1 cut(s) | 79 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 29 |
| SpeI | ACTAGT | 1 cut(s) | 296 |
| Sse9I | AATT | 1 cut(s) | 161 |
| SsiI | CCGC | 1 cut(s) | 41 |
| SspMI | CTAG | 2 cut(s) | 99, 297 |
| StyD4I | CCNGG | 1 cut(s) | 152 |
| StyI | CCWWGG | 1 cut(s) | 257 |
| TaaI | ACNGT | 1 cut(s) | 200 |
| TaqI | TCGA | 2 cut(s) | 159, 184 |
| TasI | AATT | 1 cut(s) | 161 |
| TspDTI | ATGAA | 1 cut(s) | 13 |
| TspGWI | ACGGA | 1 cut(s) | 71 |
| VpaK11BI | GGWCC | 1 cut(s) | 79 |
| XapI | RAATTY | 1 cut(s) | 161 |
| XspI | CTAG | 2 cut(s) | 99, 297 |