Rh5CG315000

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000073
Physical Location & Seq
Reverse (-)
34840371 .. 34842290
1920 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG315000.1

Sequence Viewer

Length: 1920 bp
ATGATTTCCTCCATTCCCGATCTCTTTTTATCTGCCATGAATTTCTATTCCTTAACCATCATCGATCTAGCCTCCCTGCACAGCCAATTCAATTCCTCATCACATTTCTTCCATCTATCACCCTTAAAGTTTTTTCTTCTTTCCTCCCTGACCATGCAGCCACAAGATCAGCAAAACCCAAATCCTGATGACAATATCATCGACCTCAACCTCTCTGATTCTGATCTCGAACCAGCCCAACCTACCGTACTTCTGGGCTTCATTGTCGCTGATAAGTTCTTGAATGTCTCTGCAGTCATCAGGATCTTGACTCGTGCTTGGGCTGACTTTGGCGAAGTCCATATTGAATCAATCAGAGACCACAGAACCTTCACCTTCACCCCAATGGAACCTGAGGGTGCCCAATGTATCCTTGATCGGGGACCTTGGTCCGTCATGGGTCACAATGTCACCGTCCATCTTTGGCCTCTAGATGCTCGTCTAGAGGATGTCCCTCTGCATCTGCTTTCCACCTGGATTCAAGCTCATGGCCTCCCCCTTGGACAATTGACACTCGCAAACGCTAAGCTTATCGGAGCGGTTGCTGGAACGGTACTTGAGGTAGAAAATCCTAAAGCTTTTAATTGTTGGAGGGGTTTTTTACGTATCCGTATCAATCTCAATACTCAACTTCCTCTAGCCCCTGGAGTTTGGATCCGATGTGGTAACCGACCACCAATCTGGGTCGAATTTAGGTTTGAACGCATCACTCTCTTCTGCTACAATTGTGGGAGGCTGGGTCATAGTGAAAGATTTTGTAATCATGCCCGCCATCCCAGGGCAGAGAGACTTGGTAATTGGATGTTATCCCCAGCTGCCCGTCGTCAAACTTCTTCTCGTTCGGAAGGTGATCACGGCTGGGACCGTTTCCAACGCCAAAGCTTTCACAACCGCCAGAACCAGTGGTCGTATCCAGGTCCGGTACCGGTTTCATCACCACTTTTGCAAGCAGCTGACCCATCGTTGCAAGCTAATCATCGGCACAGAGGAACTTTGGTCATCACTGAACCTTCAGAGGACCCCCACCCTCGTCCTCCACACTTACTCTCTCCTGCTCGATGCTCGTGTGGATCTATTATTGCCTCCCCCCAAGACAAAGGTAAAGGAAAGGCTGTTTTTGCTGATGACCCGATCATTGAAACGGTCTCTGATGATGAGGAAGTCATGCTTGTTTCTCCACCGTCCTCCTCTGCTCCTGCACTTGGATCATCAGGTCAACTTCCCTTGGGCCTGAATGAGTGCAGTCCTGAACCAGGACAACCTCCCTTGGGCCTGAGTGAGTGCAGTCCGGACCCCAATATCATTGAACCTCCTCCTTTGGGCCAGATTGAGCTTTCTGCTAATCCACACCAATCCCCTCTTCTGTCCTTGGAAAGTCAAATCCCCTTGACCATTACGGATCCCACCTCTTCTCCTATTTCCCTGACCAAGCCACACGTGGCTTTACCAGCCACACCACCTTCATCACCCACCATTGATATTACTGTTTCTGGTATTGCTACATTCCTGGACCGCCTCCGATTAAAGCGCCTCGCTGATGAGGCTTCCCATTTATCACATTCTCAGGCAAAGAAACTGAAAGCAAGATCTGCAACAGATTCCACTGTAATGCCCTCCCCTCTGCCTCCGGATCTTCCACTCCCAGGACCCACTTTTTCCTCAGGTACGACTGGTCGACTCCGGTCTTCTTCTTCCACAACCTCTACTCGTAGTCGAGGCCGGGGCCGTGGTCATGGTACTCGGGGAAGGAGTCGTCGCCTACCTTCTGAGGTGGAATTCATTCCCACTCTTCAGAGAGATTCTTTTTTGCGGGATACTCTGTCAACACATGAGGGACTTTTGGCTGTTCAGACAATCCTTGCTGTGACTTATTCAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4 zf-RING_2

Protein Analysis

639

Amino Acids

70.14

Weight (kDa)

6.56

Isoelectric Point (pI)

57.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 232 - 267 2e-10 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 961
AccB1I GGYRCC 2 cut(s) 398, 961
AccBSI CCGCTC 1 cut(s) 578
AccI GTMKAC 1 cut(s) 1714
AccIII TCCGGA 2 cut(s) 1327, 1666
AciI CCGC 5 cut(s) 578, 808, 931, 1552, 1849
AclWI GGATC 8 cut(s) 311, 688, 701, 1117, 1252, 1433, 1446, 1677
AcsI RAATTY 3 cut(s) 40, 728, 1814
AcuI CTGAAG 2 cut(s) 1035, 1814
AcvI CACGTG 1 cut(s) 1477
AfaI GTAC 5 cut(s) 249, 594, 963, 1705, 1777
AfiI CCNNNNNNNGG 7 cut(s) 418, 817, 1241, 1292, 1307, 1358, 1682
AflIII ACRYGT 1 cut(s) 1474
AgeI ACCGGT 1 cut(s) 964
AgsI TTSAA 7 cut(s) 91, 283, 347, 521, 740, 1178, 1346
AjnI CCWGG 7 cut(s) 512, 682, 815, 952, 1291, 1545, 1681
AjuI GAANNNNNNNTTGG 2 cut(s) 1383, 1415
AluBI AGCT 8 cut(s) 524, 568, 617, 854, 921, 992, 1010, 1372
AluI AGCT 8 cut(s) 524, 568, 617, 854, 921, 992, 1010, 1372
Alw26I GTCTC 4 cut(s) 292, 351, 820, 1189
AlwI GGATC 8 cut(s) 311, 688, 701, 1117, 1252, 1433, 1446, 1677
Ama87I CYCGRG 1 cut(s) 1779
Aor13HI TCCGGA 2 cut(s) 1327, 1666
AoxI GGCC 7 cut(s) 464, 529, 1267, 1309, 1360, 1756, 1762
ApeKI GCWGC 3 cut(s) 157, 854, 989
ApoI RAATTY 3 cut(s) 40, 728, 1814
AsiGI ACCGGT 1 cut(s) 964
Asp700I GAANNNNTTC 1 cut(s) 1818
Asp718I GGTACC 1 cut(s) 961
AspLEI GCGC 1 cut(s) 1569
AsuC2I CCSGG 1 cut(s) 1760
AsuHPI GGTGA 7 cut(s) 111, 364, 370, 442, 899, 966, 1497
AvaI CYCGRG 1 cut(s) 1779
AvaII GGWCC 8 cut(s) 422, 429, 901, 956, 1057, 1330, 1549, 1685
AxyI CCTNAGG 2 cut(s) 393, 1699
BaeGI GKGCMC 1 cut(s) 403
BamHI GGATCC 2 cut(s) 693, 1438
BanI GGYRCC 2 cut(s) 398, 961
BauI CACGAG 2 cut(s) 312, 1102
BbrPI CACGTG 1 cut(s) 1477
BbsI GAAGAC 1 cut(s) 1716
BbvI GCAGC 3 cut(s) 169, 841, 1001
BccI CCATC 5 cut(s) 65, 120, 465, 819, 1006
BceAI ACGGC 2 cut(s) 910, 1749
BciT130I CCWGG 7 cut(s) 514, 684, 817, 954, 1293, 1547, 1683
BciVI GTATCC 4 cut(s) 419, 656, 960, 1846
BclI TGATCA 1 cut(s) 889
BcnI CCSGG 1 cut(s) 1760
BcoDI GTCTC 4 cut(s) 292, 351, 820, 1189
BfaI CTAG 4 cut(s) 68, 470, 482, 677
BfmI CTRYAG 1 cut(s) 291
BfoI RGCGCY 1 cut(s) 1570
BfuI GTATCC 4 cut(s) 419, 656, 960, 1846
BglII AGATCT 1 cut(s) 1625
BisI GCNGC 3 cut(s) 158, 855, 990
BlpI GCTNAGC 1 cut(s) 564
BlsI GCNGC 3 cut(s) 159, 856, 991
Bme1390I CCNGG 8 cut(s) 514, 684, 817, 954, 1293, 1547, 1683, 1760
Bme18I GGWCC 8 cut(s) 422, 429, 901, 956, 1057, 1330, 1549, 1685
BmeT110I CYCGRG 1 cut(s) 1779
BmrFI CCNGG 8 cut(s) 514, 684, 817, 954, 1293, 1547, 1683, 1760
BmsI GCATC 4 cut(s) 463, 508, 753, 1088
BoxI GACNNNNGTC 2 cut(s) 427, 1720
BpiI GAAGAC 1 cut(s) 1716
BpmI CTGGAG 1 cut(s) 705
Bpu1102I GCTNAGC 1 cut(s) 564
BpuEI CTTGAG 1 cut(s) 617
BpuMI CCSGG 1 cut(s) 1760
Bsa29I ATCGAT 1 cut(s) 63
BsaAI YACGTR 2 cut(s) 644, 1477
BsaBI GATNNNNATC 1 cut(s) 222
BsaI GGTCTC 2 cut(s) 351, 1189
BsaWI WCCGGW 5 cut(s) 958, 964, 1327, 1666, 1719
BsaXI ACNNNNNCTCC 4 cut(s) 763, 793, 1435, 1465
Bsc4I CCNNNNNNNGG 7 cut(s) 418, 817, 1241, 1292, 1307, 1358, 1682
Bse118I RCCGGY 1 cut(s) 964
Bse1I ACTGG 2 cut(s) 940, 1714
Bse21I CCTNAGG 2 cut(s) 393, 1699
Bse8I GATNNNNATC 1 cut(s) 222
BseAI TCCGGA 2 cut(s) 1327, 1666
BseBI CCWGG 7 cut(s) 514, 684, 817, 954, 1293, 1547, 1683
BseCI ATCGAT 1 cut(s) 63
BseGI GGATG 3 cut(s) 493, 811, 846
BseJI GATNNNNATC 1 cut(s) 222
BseLI CCNNNNNNNGG 7 cut(s) 418, 817, 1241, 1292, 1307, 1358, 1682
BseMII CTCAG 5 cut(s) 384, 1304, 1616, 1713, 1797
BseNI ACTGG 2 cut(s) 940, 1714
BseRI GAGGAG 2 cut(s) 1216, 1341
BseSI GKGCMC 1 cut(s) 403
BseXI GCAGC 3 cut(s) 169, 841, 1001
BseYI CCCAGC 3 cut(s) 775, 850, 897
BsgI GTGCAG 4 cut(s) 62, 1221, 1300, 1342
BshFI GGCC 7 cut(s) 466, 531, 1269, 1311, 1362, 1758, 1764
BshNI GGYRCC 2 cut(s) 398, 961
BshTI ACCGGT 1 cut(s) 964
BshVI ATCGAT 1 cut(s) 63
BsiHKCI CYCGRG 1 cut(s) 1779
BsiSI CCGG 6 cut(s) 959, 965, 1328, 1667, 1720, 1759
BslFI GGGAC 4 cut(s) 435, 476, 914, 1887
BslI CCNNNNNNNGG 7 cut(s) 418, 817, 1241, 1292, 1307, 1358, 1682
BsmAI GTCTC 4 cut(s) 292, 351, 820, 1189
BsmFI GGGAC 4 cut(s) 435, 476, 914, 1887
BsnI GGCC 7 cut(s) 466, 531, 1269, 1311, 1362, 1758, 1764
Bso31I GGTCTC 2 cut(s) 351, 1189
BsoBI CYCGRG 1 cut(s) 1779
Bsp1286I GDGCHC 1 cut(s) 403
Bsp13I TCCGGA 2 cut(s) 1327, 1666
Bsp1720I GCTNAGC 1 cut(s) 564
BspACI CCGC 5 cut(s) 578, 808, 931, 1552, 1849
BspANI GGCC 7 cut(s) 466, 531, 1269, 1311, 1362, 1758, 1764
BspCNI CTCAG 5 cut(s) 385, 1305, 1615, 1712, 1798
BspDI ATCGAT 1 cut(s) 63
BspEI TCCGGA 2 cut(s) 1327, 1666
BspMAI CTGCAG 1 cut(s) 295
BspPI GGATC 8 cut(s) 311, 688, 701, 1117, 1252, 1433, 1446, 1677
BspT107I GGYRCC 2 cut(s) 398, 961
BspTNI GGTCTC 2 cut(s) 351, 1189
BsrBI CCGCTC 1 cut(s) 578
BsrFI RCCGGY 1 cut(s) 964
BsrI ACTGG 2 cut(s) 940, 1714
BssAI RCCGGY 1 cut(s) 964
BssSI CACGAG 2 cut(s) 312, 1102
BssT1I CCWWGG 5 cut(s) 425, 538, 1263, 1305, 1407
Bst2BI CACGAG 2 cut(s) 312, 1102
Bst2UI CCWGG 7 cut(s) 514, 684, 817, 954, 1293, 1547, 1683
Bst4CI ACNGT 8 cut(s) 247, 454, 592, 905, 1183, 1221, 1525, 1645
Bst6I CTCTTC 4 cut(s) 758, 1404, 1453, 1833
BstAPI GCANNNNNTGC 1 cut(s) 1628
BstBAI YACGTR 2 cut(s) 644, 1477
BstC8I GCNNGC 3 cut(s) 808, 987, 1008
BstDEI CTNAG 6 cut(s) 393, 564, 1313, 1602, 1699, 1806
BstDSI CCRYGG 1 cut(s) 1765
BstEII GGTNACC 1 cut(s) 704
BstENI CCTNNNNNAGG 1 cut(s) 1290
BstF5I GGATG 3 cut(s) 493, 811, 846
BstH2I RGCGCY 1 cut(s) 1570
BstHHI GCGC 1 cut(s) 1569
BstMAI GTCTC 4 cut(s) 292, 351, 820, 1189
BstMWI GCNNNNNNNGC 4 cut(s) 1157, 1487, 1580, 1628
BstNI CCWGG 7 cut(s) 514, 684, 817, 954, 1293, 1547, 1683
BstPAI GACNNNNGTC 2 cut(s) 427, 1720
BstPI GGTNACC 1 cut(s) 704
BstSCI CCNGG 8 cut(s) 512, 682, 815, 952, 1291, 1545, 1681, 1758
BstSFI CTRYAG 1 cut(s) 291
BstSLI GKGCMC 1 cut(s) 403
BstSNI TACGTA 1 cut(s) 644
BstV1I GCAGC 3 cut(s) 169, 841, 1001
BstV2I GAAGAC 1 cut(s) 1716
BstX2I RGATCY 6 cut(s) 303, 693, 1109, 1438, 1625, 1669
BstXI CCANNNNNNTGG 1 cut(s) 720
BstYI RGATCY 6 cut(s) 303, 693, 1109, 1438, 1625, 1669
Bsu15I ATCGAT 1 cut(s) 63
Bsu36I CCTNAGG 2 cut(s) 393, 1699
BsuI GTATCC 4 cut(s) 419, 656, 960, 1846
BsuRI GGCC 7 cut(s) 466, 531, 1269, 1311, 1362, 1758, 1764
BsuTUI ATCGAT 1 cut(s) 63
BtgI CCRYGG 1 cut(s) 1765
BtsCI GGATG 3 cut(s) 493, 811, 846
BtsIMutI CAGTG 3 cut(s) 947, 1041, 1641
Cac8I GCNNGC 3 cut(s) 808, 987, 1008
CfoI GCGC 1 cut(s) 1569
Cfr10I RCCGGY 1 cut(s) 964
ClaI ATCGAT 1 cut(s) 63
Csp6I GTAC 5 cut(s) 248, 593, 962, 1704, 1776
CspAI ACCGGT 1 cut(s) 964
CviAII CATG 8 cut(s) 37, 154, 436, 527, 803, 1204, 1772, 1868
CviQI GTAC 5 cut(s) 248, 593, 962, 1704, 1776
DdeI CTNAG 6 cut(s) 393, 564, 1313, 1602, 1699, 1806
Eam1104I CTCTTC 4 cut(s) 758, 1404, 1453, 1833
EarI CTCTTC 4 cut(s) 758, 1404, 1453, 1833
Eco105I TACGTA 1 cut(s) 644
Eco130I CCWWGG 5 cut(s) 425, 538, 1263, 1305, 1407
Eco31I GGTCTC 2 cut(s) 351, 1189
Eco47I GGWCC 8 cut(s) 422, 429, 901, 956, 1057, 1330, 1549, 1685
Eco57I CTGAAG 2 cut(s) 1035, 1814
Eco72I CACGTG 1 cut(s) 1477
Eco81I CCTNAGG 2 cut(s) 393, 1699
Eco88I CYCGRG 1 cut(s) 1779
Eco91I GGTNACC 1 cut(s) 704
EcoNI CCTNNNNNAGG 1 cut(s) 1290
EcoO109I RGGNCCY 3 cut(s) 422, 1057, 1685
EcoO65I GGTNACC 1 cut(s) 704
EcoRI GAATTC 1 cut(s) 1814
EcoRII CCWGG 7 cut(s) 512, 682, 815, 952, 1291, 1545, 1681
EcoT14I CCWWGG 5 cut(s) 425, 538, 1263, 1305, 1407
ErhI CCWWGG 5 cut(s) 425, 538, 1263, 1305, 1407
FaeI CATG 8 cut(s) 40, 157, 439, 530, 806, 1207, 1775, 1871
FalI AAGNNNNNCTT 2 cut(s) 1191, 1223
FaqI GGGAC 4 cut(s) 435, 476, 914, 1887
FatI CATG 8 cut(s) 36, 153, 435, 526, 802, 1203, 1771, 1867
FauI CCCGC 2 cut(s) 815, 1842
FbaI TGATCA 1 cut(s) 889
FblI GTMKAC 1 cut(s) 1714
Fnu4HI GCNGC 3 cut(s) 158, 855, 990
FokI GGATG 3 cut(s) 500, 798, 853
Fsp4HI GCNGC 3 cut(s) 158, 855, 990
FspBI CTAG 4 cut(s) 68, 470, 482, 677
GlaI GCGC 1 cut(s) 1568
GluI GCNGC 3 cut(s) 158, 855, 990
GsaI CCCAGC 3 cut(s) 779, 854, 901
GsuI CTGGAG 1 cut(s) 705
HaeII RGCGCY 1 cut(s) 1570
HaeIII GGCC 7 cut(s) 466, 531, 1269, 1311, 1362, 1758, 1764
HapII CCGG 6 cut(s) 959, 965, 1328, 1667, 1720, 1759
HhaI GCGC 1 cut(s) 1569
Hin1II CATG 8 cut(s) 40, 157, 439, 530, 806, 1207, 1775, 1871
Hin6I GCGC 1 cut(s) 1567
HinP1I GCGC 1 cut(s) 1567
HincII GTYRAC 3 cut(s) 1256, 1715, 1863
HindII GTYRAC 3 cut(s) 1256, 1715, 1863
HindIII AAGCTT 3 cut(s) 566, 615, 919
HinfI GANTC 8 cut(s) 218, 310, 347, 517, 1637, 1716, 1789, 1838
HpaII CCGG 6 cut(s) 959, 965, 1328, 1667, 1720, 1759
HphI GGTGA 7 cut(s) 111, 364, 370, 442, 899, 966, 1497
Hpy166II GTNNAC 3 cut(s) 1256, 1715, 1863
Hpy8I GTNNAC 3 cut(s) 1256, 1715, 1863
Hpy99I CGWCG 2 cut(s) 864, 1797
HpyAV CCTTC 7 cut(s) 379, 385, 878, 1059, 1509, 1779, 1812
HpyCH4III ACNGT 8 cut(s) 247, 454, 592, 905, 1183, 1221, 1525, 1645
HpyCH4IV ACGT 2 cut(s) 643, 1476
HpyF10VI GCNNNNNNNGC 4 cut(s) 1157, 1487, 1580, 1628
HpyF3I CTNAG 6 cut(s) 393, 564, 1313, 1602, 1699, 1806
HpySE526I ACGT 2 cut(s) 643, 1476
Hsp92II CATG 8 cut(s) 40, 157, 439, 530, 806, 1207, 1775, 1871
HspAI GCGC 1 cut(s) 1567
Kpn2I TCCGGA 2 cut(s) 1327, 1666
KpnI GGTACC 1 cut(s) 965
Ksp22I TGATCA 1 cut(s) 889
LmnI GCTCC 2 cut(s) 575, 1237
Lsp1109I GCAGC 3 cut(s) 169, 841, 1001
LweI GCATC 4 cut(s) 463, 508, 753, 1088
MaeI CTAG 4 cut(s) 68, 470, 482, 677
MaeII ACGT 2 cut(s) 643, 1476
MaeIII GTNAC 4 cut(s) 440, 448, 704, 1903
MbiI CCGCTC 1 cut(s) 578
MfeI CAATTG 2 cut(s) 545, 763
MflI RGATCY 6 cut(s) 303, 693, 1109, 1438, 1625, 1669
MhlI GDGCHC 1 cut(s) 403
MluCI AATT 9 cut(s) 40, 86, 91, 545, 622, 728, 763, 835, 1814
MlyI GAGTC 3 cut(s) 304, 1710, 1798
MmeI TCCRAC 2 cut(s) 608, 934
MroI TCCGGA 2 cut(s) 1327, 1666
MroXI GAANNNNTTC 1 cut(s) 1818
MseI TTAA 4 cut(s) 53, 125, 621, 1562
MslI CAYNNNNRTG 2 cut(s) 383, 1646
MspA1I CMGCKG 2 cut(s) 854, 992
MspI CCGG 6 cut(s) 959, 965, 1328, 1667, 1720, 1759
MspR9I CCNGG 8 cut(s) 514, 684, 817, 954, 1293, 1547, 1683, 1760
MunI CAATTG 2 cut(s) 545, 763
MvaI CCWGG 7 cut(s) 514, 684, 817, 954, 1293, 1547, 1683
MwoI GCNNNNNNNGC 4 cut(s) 1157, 1487, 1580, 1628
NciI CCSGG 1 cut(s) 1760
NlaIII CATG 8 cut(s) 40, 157, 439, 530, 806, 1207, 1775, 1871
NmuCI GTSAC 3 cut(s) 440, 448, 1903
PasI CCCWGGG 1 cut(s) 816
PdmI GAANNNNTTC 1 cut(s) 1818
PfeI GAWTC 5 cut(s) 218, 347, 517, 1637, 1838
PfoI TCCNGGA 1 cut(s) 1545
PinAI ACCGGT 1 cut(s) 964
PkrI GCNGC 3 cut(s) 159, 856, 991
PleI GAGTC 3 cut(s) 304, 1710, 1797
PmaCI CACGTG 1 cut(s) 1477
PmlI CACGTG 1 cut(s) 1477
PpsI GAGTC 3 cut(s) 304, 1710, 1797
Ppu21I YACGTR 2 cut(s) 644, 1477
PpuMI RGGWCCY 3 cut(s) 422, 1057, 1685
PshAI GACNNNNGTC 2 cut(s) 427, 1720
Psp5II RGGWCCY 3 cut(s) 422, 1057, 1685
Psp6I CCWGG 7 cut(s) 512, 682, 815, 952, 1291, 1545, 1681
PspCI CACGTG 1 cut(s) 1477
PspEI GGTNACC 1 cut(s) 704
PspFI CCCAGC 3 cut(s) 775, 850, 897
PspGI CCWGG 7 cut(s) 512, 682, 815, 952, 1291, 1545, 1681
PspPPI RGGWCCY 3 cut(s) 422, 1057, 1685
PstI CTGCAG 1 cut(s) 295
PsuI RGATCY 6 cut(s) 303, 693, 1109, 1438, 1625, 1669
PvuII CAGCTG 2 cut(s) 854, 992
RsaI GTAC 5 cut(s) 249, 594, 963, 1705, 1777
RsaNI GTAC 5 cut(s) 248, 593, 962, 1704, 1776
RseI CAYNNNNRTG 2 cut(s) 383, 1646
SalI GTCGAC 1 cut(s) 1713
SaqAI TTAA 4 cut(s) 53, 125, 621, 1562
SatI GCNGC 3 cut(s) 158, 855, 990
SchI GAGTC 3 cut(s) 304, 1710, 1798
ScrFI CCNGG 8 cut(s) 514, 684, 817, 954, 1293, 1547, 1683, 1760
SduI GDGCHC 1 cut(s) 403
SfaNI GCATC 4 cut(s) 463, 508, 753, 1088
SfcI CTRYAG 1 cut(s) 291
SinI GGWCC 8 cut(s) 422, 429, 901, 956, 1057, 1330, 1549, 1685
SmiMI CAYNNNNRTG 2 cut(s) 383, 1646
SmlI CTYRAG 1 cut(s) 596
SmoI CTYRAG 1 cut(s) 596
SnaBI TACGTA 1 cut(s) 644
Sse9I AATT 9 cut(s) 40, 86, 91, 545, 622, 728, 763, 835, 1814
SsiI CCGC 5 cut(s) 578, 808, 931, 1552, 1849
SspMI CTAG 4 cut(s) 68, 470, 482, 677
StyD4I CCNGG 8 cut(s) 512, 682, 815, 952, 1291, 1545, 1681, 1758
StyI CCWWGG 5 cut(s) 425, 538, 1263, 1305, 1407
TaaI ACNGT 8 cut(s) 247, 454, 592, 905, 1183, 1221, 1525, 1645
TaiI ACGT 2 cut(s) 646, 1479
TaqI TCGA 7 cut(s) 63, 201, 228, 726, 1096, 1714, 1753
TasI AATT 9 cut(s) 40, 86, 91, 545, 622, 728, 763, 835, 1814
TfiI GAWTC 5 cut(s) 218, 347, 517, 1637, 1838
Tru1I TTAA 4 cut(s) 53, 125, 621, 1562
Tru9I TTAA 4 cut(s) 53, 125, 621, 1562
TscAI CASTG 3 cut(s) 947, 1048, 1648
TseFI GTSAC 3 cut(s) 440, 448, 1903
TseI GCWGC 3 cut(s) 157, 854, 989
Tsp45I GTSAC 3 cut(s) 440, 448, 1903
TspDTI ATGAA 5 cut(s) 53, 250, 960, 1491, 1807
TspGWI ACGGA 3 cut(s) 421, 638, 1451
TspRI CASTG 3 cut(s) 947, 1048, 1648
VpaK11BI GGWCC 8 cut(s) 422, 429, 901, 956, 1057, 1330, 1549, 1685
XagI CCTNNNNNAGG 1 cut(s) 1290
XapI RAATTY 3 cut(s) 40, 728, 1814
XbaI TCTAGA 2 cut(s) 469, 481
XcmI CCANNNNNNNNNTGG 1 cut(s) 1474
XmiI GTMKAC 1 cut(s) 1714
XmnI GAANNNNTTC 1 cut(s) 1818
XspI CTAG 4 cut(s) 68, 470, 482, 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.