Zinc knuckle
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 460 |
| AccB1I | GGYRCC | 1 cut(s) | 556 |
| AclI | AACGTT | 1 cut(s) | 511 |
| AclWI | GGATC | 2 cut(s) | 577, 590 |
| AcoI | YGGCCR | 1 cut(s) | 515 |
| AcsI | RAATTY | 4 cut(s) | 179, 294, 496, 657 |
| AcuI | CTGAAG | 2 cut(s) | 377, 624 |
| AfaI | GTAC | 2 cut(s) | 543, 601 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 827 |
| AgsI | TTSAA | 3 cut(s) | 161, 300, 656 |
| AjiI | CACGTC | 1 cut(s) | 701 |
| AjnI | CCWGG | 1 cut(s) | 788 |
| AluBI | AGCT | 7 cut(s) | 75, 335, 369, 643, 753, 772, 847 |
| AluI | AGCT | 7 cut(s) | 75, 335, 369, 643, 753, 772, 847 |
| AlwI | GGATC | 2 cut(s) | 577, 590 |
| AoxI | GGCC | 1 cut(s) | 515 |
| ApeKI | GCWGC | 4 cut(s) | 332, 346, 745, 772 |
| ApoI | RAATTY | 4 cut(s) | 179, 294, 496, 657 |
| AseI | ATTAAT | 2 cut(s) | 20, 399 |
| AspLEI | GCGC | 1 cut(s) | 156 |
| AspS9I | GGNCC | 4 cut(s) | 203, 472, 782, 817 |
| AsuHPI | GGTGA | 2 cut(s) | 145, 686 |
| AvaII | GGWCC | 4 cut(s) | 203, 472, 782, 817 |
| BalI | TGGCCA | 1 cut(s) | 517 |
| BamHI | GGATCC | 1 cut(s) | 582 |
| BanI | GGYRCC | 1 cut(s) | 556 |
| BbvI | GCAGC | 4 cut(s) | 344, 358, 757, 759 |
| BccI | CCATC | 2 cut(s) | 547, 829 |
| BciT130I | CCWGG | 1 cut(s) | 790 |
| BclI | TGATCA | 1 cut(s) | 486 |
| BfaI | CTAG | 2 cut(s) | 615, 627 |
| BfuAI | ACCTGC | 1 cut(s) | 460 |
| BglII | AGATCT | 1 cut(s) | 87 |
| BisI | GCNGC | 4 cut(s) | 333, 347, 746, 773 |
| BlsI | GCNGC | 4 cut(s) | 334, 348, 747, 774 |
| Bme1390I | CCNGG | 1 cut(s) | 790 |
| Bme18I | GGWCC | 4 cut(s) | 203, 472, 782, 817 |
| BmgBI | CACGTC | 1 cut(s) | 701 |
| BmgT120I | GGNCC | 4 cut(s) | 203, 472, 782, 817 |
| BmiI | GGNNCC | 4 cut(s) | 204, 558, 584, 819 |
| BmrFI | CCNGG | 1 cut(s) | 790 |
| BpuEI | CTTGAG | 1 cut(s) | 299 |
| BsaJI | CCNNGG | 1 cut(s) | 39 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 827 |
| Bse1I | ACTGG | 2 cut(s) | 327, 729 |
| Bse3DI | GCAATG | 1 cut(s) | 862 |
| BseBI | CCWGG | 1 cut(s) | 790 |
| BseDI | CCNNGG | 1 cut(s) | 39 |
| BseGI | GGATG | 1 cut(s) | 445 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 827 |
| BseMI | GCAATG | 1 cut(s) | 862 |
| BseMII | CTCAG | 3 cut(s) | 684, 797, 839 |
| BseNI | ACTGG | 2 cut(s) | 327, 729 |
| BseRI | GAGGAG | 2 cut(s) | 275, 857 |
| BseXI | GCAGC | 4 cut(s) | 344, 358, 757, 759 |
| BsgI | GTGCAG | 1 cut(s) | 351 |
| BshFI | GGCC | 1 cut(s) | 517 |
| BshNI | GGYRCC | 1 cut(s) | 556 |
| BslFI | GGGAC | 1 cut(s) | 803 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 827 |
| BsmFI | GGGAC | 1 cut(s) | 803 |
| BsnI | GGCC | 1 cut(s) | 517 |
| Bsp143I | GATC | 3 cut(s) | 87, 486, 582 |
| BspANI | GGCC | 1 cut(s) | 517 |
| BspCNI | CTCAG | 3 cut(s) | 683, 798, 840 |
| BspLI | GGNNCC | 4 cut(s) | 204, 558, 584, 819 |
| BspMI | ACCTGC | 1 cut(s) | 460 |
| BspPI | GGATC | 2 cut(s) | 577, 590 |
| BspQI | GCTCTTC | 1 cut(s) | 712 |
| BspT107I | GGYRCC | 1 cut(s) | 556 |
| BsrDI | GCAATG | 1 cut(s) | 862 |
| BsrI | ACTGG | 2 cut(s) | 327, 729 |
| BssECI | CCNNGG | 1 cut(s) | 39 |
| BssMI | GATC | 3 cut(s) | 87, 486, 582 |
| BssT1I | CCWWGG | 1 cut(s) | 39 |
| Bst2UI | CCWGG | 1 cut(s) | 790 |
| Bst6I | CTCTTC | 2 cut(s) | 156, 712 |
| BstC8I | GCNNGC | 1 cut(s) | 624 |
| BstDEI | CTNAG | 3 cut(s) | 670, 806, 848 |
| BstF5I | GGATG | 1 cut(s) | 445 |
| BstHHI | GCGC | 1 cut(s) | 156 |
| BstKTI | GATC | 3 cut(s) | 90, 489, 585 |
| BstMBI | GATC | 3 cut(s) | 87, 486, 582 |
| BstNI | CCWGG | 1 cut(s) | 790 |
| BstSCI | CCNGG | 1 cut(s) | 788 |
| BstV1I | GCAGC | 4 cut(s) | 344, 358, 757, 759 |
| BstX2I | RGATCY | 2 cut(s) | 87, 582 |
| BstYI | RGATCY | 2 cut(s) | 87, 582 |
| BsuRI | GGCC | 1 cut(s) | 517 |
| BtrI | CACGTC | 1 cut(s) | 701 |
| BtsCI | GGATG | 1 cut(s) | 445 |
| BveI | ACCTGC | 1 cut(s) | 460 |
| Cac8I | GCNNGC | 1 cut(s) | 624 |
| CfoI | GCGC | 1 cut(s) | 156 |
| Cfr13I | GGNCC | 4 cut(s) | 203, 472, 782, 817 |
| Csp6I | GTAC | 2 cut(s) | 542, 600 |
| CviAII | CATG | 2 cut(s) | 304, 776 |
| CviQI | GTAC | 2 cut(s) | 542, 600 |
| DdeI | CTNAG | 3 cut(s) | 670, 806, 848 |
| DpnI | GATC | 3 cut(s) | 89, 488, 584 |
| DpnII | GATC | 3 cut(s) | 87, 486, 582 |
| EaeI | YGGCCR | 1 cut(s) | 515 |
| Eam1104I | CTCTTC | 2 cut(s) | 156, 712 |
| EarI | CTCTTC | 2 cut(s) | 156, 712 |
| Eco130I | CCWWGG | 1 cut(s) | 39 |
| Eco47I | GGWCC | 4 cut(s) | 203, 472, 782, 817 |
| Eco57I | CTGAAG | 2 cut(s) | 377, 624 |
| EcoO109I | RGGNCCY | 2 cut(s) | 203, 817 |
| EcoRII | CCWGG | 1 cut(s) | 788 |
| EcoT14I | CCWWGG | 1 cut(s) | 39 |
| ErhI | CCWWGG | 1 cut(s) | 39 |
| FaeI | CATG | 2 cut(s) | 307, 779 |
| FaqI | GGGAC | 1 cut(s) | 803 |
| FatI | CATG | 2 cut(s) | 303, 775 |
| FbaI | TGATCA | 1 cut(s) | 486 |
| Fnu4HI | GCNGC | 4 cut(s) | 333, 347, 746, 773 |
| FokI | GGATG | 1 cut(s) | 452 |
| Fsp4HI | GCNGC | 4 cut(s) | 333, 347, 746, 773 |
| FspBI | CTAG | 2 cut(s) | 615, 627 |
| GlaI | GCGC | 1 cut(s) | 155 |
| GluI | GCNGC | 4 cut(s) | 333, 347, 746, 773 |
| HaeIII | GGCC | 1 cut(s) | 517 |
| HhaI | GCGC | 1 cut(s) | 156 |
| Hin1II | CATG | 2 cut(s) | 307, 779 |
| Hin6I | GCGC | 1 cut(s) | 154 |
| HinP1I | GCGC | 1 cut(s) | 154 |
| HincII | GTYRAC | 1 cut(s) | 683 |
| HindII | GTYRAC | 1 cut(s) | 683 |
| HindIII | AAGCTT | 1 cut(s) | 73 |
| HphI | GGTGA | 2 cut(s) | 145, 686 |
| Hpy166II | GTNNAC | 2 cut(s) | 683, 782 |
| Hpy188I | TCNGA | 4 cut(s) | 87, 126, 396, 573 |
| Hpy188III | TCNNGA | 3 cut(s) | 278, 456, 825 |
| Hpy8I | GTNNAC | 2 cut(s) | 683, 782 |
| HpyAV | CCTTC | 3 cut(s) | 532, 571, 612 |
| HpyCH4IV | ACGT | 2 cut(s) | 511, 700 |
| HpyCH4V | TGCA | 2 cut(s) | 332, 775 |
| HpyF3I | CTNAG | 3 cut(s) | 670, 806, 848 |
| HpySE526I | ACGT | 2 cut(s) | 511, 700 |
| Hsp92II | CATG | 2 cut(s) | 307, 779 |
| HspAI | GCGC | 1 cut(s) | 154 |
| Ksp22I | TGATCA | 1 cut(s) | 486 |
| Kzo9I | GATC | 3 cut(s) | 87, 486, 582 |
| LguI | GCTCTTC | 1 cut(s) | 712 |
| LmnI | GCTCC | 2 cut(s) | 343, 844 |
| Lsp1109I | GCAGC | 4 cut(s) | 344, 358, 757, 759 |
| MaeI | CTAG | 2 cut(s) | 615, 627 |
| MaeII | ACGT | 2 cut(s) | 511, 700 |
| MaeIII | GTNAC | 1 cut(s) | 715 |
| MalI | GATC | 3 cut(s) | 89, 488, 584 |
| MboI | GATC | 3 cut(s) | 87, 486, 582 |
| MboII | GAAGA | 6 cut(s) | 173, 237, 455, 617, 658, 699 |
| MflI | RGATCY | 2 cut(s) | 87, 582 |
| MlsI | TGGCCA | 1 cut(s) | 517 |
| MluNI | TGGCCA | 1 cut(s) | 517 |
| MmeI | TCCRAC | 1 cut(s) | 627 |
| Mox20I | TGGCCA | 1 cut(s) | 517 |
| MscI | TGGCCA | 1 cut(s) | 517 |
| MseI | TTAA | 5 cut(s) | 20, 77, 173, 318, 399 |
| Msp20I | TGGCCA | 1 cut(s) | 517 |
| MspR9I | CCNGG | 1 cut(s) | 790 |
| MvaI | CCWGG | 1 cut(s) | 790 |
| NdeII | GATC | 3 cut(s) | 87, 486, 582 |
| NlaIII | CATG | 2 cut(s) | 307, 779 |
| NlaIV | GGNNCC | 4 cut(s) | 204, 558, 584, 819 |
| PciSI | GCTCTTC | 1 cut(s) | 712 |
| PkrI | GCNGC | 4 cut(s) | 334, 348, 747, 774 |
| PpuMI | RGGWCCY | 2 cut(s) | 203, 817 |
| PshBI | ATTAAT | 2 cut(s) | 20, 399 |
| Psp1406I | AACGTT | 1 cut(s) | 511 |
| Psp5II | RGGWCCY | 2 cut(s) | 203, 817 |
| Psp6I | CCWGG | 1 cut(s) | 788 |
| PspGI | CCWGG | 1 cut(s) | 788 |
| PspN4I | GGNNCC | 4 cut(s) | 204, 558, 584, 819 |
| PspPI | GGNCC | 4 cut(s) | 203, 472, 782, 817 |
| PspPPI | RGGWCCY | 2 cut(s) | 203, 817 |
| PsuI | RGATCY | 2 cut(s) | 87, 582 |
| RsaI | GTAC | 2 cut(s) | 543, 601 |
| RsaNI | GTAC | 2 cut(s) | 542, 600 |
| SapI | GCTCTTC | 1 cut(s) | 712 |
| SaqAI | TTAA | 5 cut(s) | 20, 77, 173, 318, 399 |
| SatI | GCNGC | 4 cut(s) | 333, 347, 746, 773 |
| Sau3AI | GATC | 3 cut(s) | 87, 486, 582 |
| Sau96I | GGNCC | 4 cut(s) | 203, 472, 782, 817 |
| ScrFI | CCNGG | 1 cut(s) | 790 |
| SinI | GGWCC | 4 cut(s) | 203, 472, 782, 817 |
| SmlI | CTYRAG | 1 cut(s) | 278 |
| SmoI | CTYRAG | 1 cut(s) | 278 |
| SspI | AATATT | 1 cut(s) | 462 |
| SspMI | CTAG | 2 cut(s) | 615, 627 |
| StyD4I | CCNGG | 1 cut(s) | 788 |
| StyI | CCWWGG | 1 cut(s) | 39 |
| TaiI | ACGT | 2 cut(s) | 514, 703 |
| TaqI | TCGA | 1 cut(s) | 258 |
| TaqII | GACCGA | 1 cut(s) | 799 |
| TatI | WGTACW | 1 cut(s) | 599 |
| Tru1I | TTAA | 5 cut(s) | 20, 77, 173, 318, 399 |
| Tru9I | TTAA | 5 cut(s) | 20, 77, 173, 318, 399 |
| TseI | GCWGC | 4 cut(s) | 332, 346, 745, 772 |
| TspDTI | ATGAA | 4 cut(s) | 263, 456, 590, 723 |
| VpaK11BI | GGWCC | 4 cut(s) | 203, 472, 782, 817 |
| VspI | ATTAAT | 2 cut(s) | 20, 399 |
| XapI | RAATTY | 4 cut(s) | 179, 294, 496, 657 |
| XspI | CTAG | 2 cut(s) | 615, 627 |