Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 161, 468 |
| AccI | GTMKAC | 1 cut(s) | 571 |
| AccIII | TCCGGA | 1 cut(s) | 562 |
| AciI | CCGC | 1 cut(s) | 456 |
| AclWI | GGATC | 4 cut(s) | 322, 467, 480, 554 |
| AcoI | YGGCCR | 1 cut(s) | 205 |
| AcuI | CTGAAG | 1 cut(s) | 637 |
| AfaI | GTAC | 2 cut(s) | 446, 605 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 43, 161, 248, 268, 456, 468 |
| AflIII | ACRYGT | 2 cut(s) | 408, 465 |
| AgsI | TTSAA | 2 cut(s) | 83, 298 |
| AjnI | CCWGG | 2 cut(s) | 154, 207 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 144, 176 |
| AluBI | AGCT | 4 cut(s) | 339, 392, 632, 651 |
| AluI | AGCT | 4 cut(s) | 339, 392, 632, 651 |
| Alw26I | GTCTC | 1 cut(s) | 417 |
| AlwI | GGATC | 4 cut(s) | 322, 467, 480, 554 |
| Aor13HI | TCCGGA | 1 cut(s) | 562 |
| AoxI | GGCC | 4 cut(s) | 205, 210, 458, 489 |
| ApaI | GGGCCC | 1 cut(s) | 462 |
| ApeKI | GCWGC | 1 cut(s) | 507 |
| AspS9I | GGNCC | 3 cut(s) | 458, 459, 489 |
| AsuHPI | GGTGA | 2 cut(s) | 251, 439 |
| AsuII | TTCGAA | 1 cut(s) | 499 |
| BaeGI | GKGCMC | 1 cut(s) | 462 |
| BalI | TGGCCA | 1 cut(s) | 207 |
| BamHI | GGATCC | 1 cut(s) | 472 |
| BanII | GRGCYC | 1 cut(s) | 462 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 364, 396 |
| BbvI | GCAGC | 1 cut(s) | 519 |
| BccI | CCATC | 4 cut(s) | 362, 397, 521, 549 |
| BciT130I | CCWGG | 2 cut(s) | 156, 209 |
| BcoDI | GTCTC | 1 cut(s) | 417 |
| BfaI | CTAG | 2 cut(s) | 360, 516 |
| BisI | GCNGC | 1 cut(s) | 508 |
| BlsI | GCNGC | 1 cut(s) | 509 |
| BmcAI | AGTACT | 1 cut(s) | 605 |
| Bme1390I | CCNGG | 2 cut(s) | 156, 209 |
| BmgT120I | GGNCC | 3 cut(s) | 458, 459, 489 |
| BmiI | GGNNCC | 3 cut(s) | 460, 474, 490 |
| BmrFI | CCNGG | 2 cut(s) | 156, 209 |
| BmsI | GCATC | 3 cut(s) | 198, 469, 546 |
| BpmI | CTGGAG | 1 cut(s) | 214 |
| Bpu14I | TTCGAA | 1 cut(s) | 499 |
| BsaJI | CCNNGG | 3 cut(s) | 155, 440, 578 |
| BsaWI | WCCGGW | 3 cut(s) | 248, 261, 562 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 323, 353 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 43, 161, 248, 268, 456, 468 |
| Bse3DI | GCAATG | 1 cut(s) | 72 |
| BseAI | TCCGGA | 1 cut(s) | 562 |
| BseBI | CCWGG | 2 cut(s) | 156, 209 |
| BseDI | CCNNGG | 3 cut(s) | 155, 440, 578 |
| BseGI | GGATG | 3 cut(s) | 52, 334, 537 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 43, 161, 248, 268, 456, 468 |
| BseMI | GCAATG | 1 cut(s) | 72 |
| BseMII | CTCAG | 1 cut(s) | 407 |
| BseRI | GAGGAG | 1 cut(s) | 624 |
| BseSI | GKGCMC | 1 cut(s) | 462 |
| BseXI | GCAGC | 1 cut(s) | 519 |
| BseYI | CCCAGC | 1 cut(s) | 628 |
| BsgI | GTGCAG | 1 cut(s) | 340 |
| Bsh1285I | CGRYCG | 1 cut(s) | 249 |
| BshFI | GGCC | 4 cut(s) | 207, 212, 460, 491 |
| BsiEI | CGRYCG | 1 cut(s) | 249 |
| BsiSI | CCGG | 3 cut(s) | 249, 262, 563 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 43, 161, 248, 268, 456, 468 |
| BsmAI | GTCTC | 1 cut(s) | 417 |
| BsnI | GGCC | 4 cut(s) | 207, 212, 460, 491 |
| Bsp119I | TTCGAA | 1 cut(s) | 499 |
| Bsp120I | GGGCCC | 1 cut(s) | 458 |
| Bsp1286I | GDGCHC | 1 cut(s) | 462 |
| Bsp13I | TCCGGA | 1 cut(s) | 562 |
| Bsp143I | GATC | 4 cut(s) | 94, 314, 472, 559 |
| Bsp19I | CCATGG | 1 cut(s) | 578 |
| BspACI | CCGC | 1 cut(s) | 456 |
| BspANI | GGCC | 4 cut(s) | 207, 212, 460, 491 |
| BspCNI | CTCAG | 1 cut(s) | 406 |
| BspEI | TCCGGA | 1 cut(s) | 562 |
| BspLI | GGNNCC | 3 cut(s) | 460, 474, 490 |
| BspPI | GGATC | 4 cut(s) | 322, 467, 480, 554 |
| BspT104I | TTCGAA | 1 cut(s) | 499 |
| BsrDI | GCAATG | 1 cut(s) | 72 |
| BssECI | CCNNGG | 3 cut(s) | 155, 440, 578 |
| BssMI | GATC | 4 cut(s) | 94, 314, 472, 559 |
| BssNAI | GTATAC | 1 cut(s) | 572 |
| BssT1I | CCWWGG | 2 cut(s) | 440, 578 |
| Bst1107I | GTATAC | 1 cut(s) | 572 |
| Bst2UI | CCWGG | 2 cut(s) | 156, 209 |
| Bst4CI | ACNGT | 1 cut(s) | 424 |
| Bst6I | CTCTTC | 3 cut(s) | 19, 105, 594 |
| BstBI | TTCGAA | 1 cut(s) | 499 |
| BstC8I | GCNNGC | 2 cut(s) | 390, 458 |
| BstDEI | CTNAG | 2 cut(s) | 124, 393 |
| BstDSI | CCRYGG | 1 cut(s) | 578 |
| BstEII | GGTNACC | 1 cut(s) | 371 |
| BstF5I | GGATG | 3 cut(s) | 52, 334, 537 |
| BstKTI | GATC | 4 cut(s) | 97, 317, 475, 562 |
| BstMAI | GTCTC | 1 cut(s) | 417 |
| BstMBI | GATC | 4 cut(s) | 94, 314, 472, 559 |
| BstMCI | CGRYCG | 1 cut(s) | 249 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 488 |
| BstNI | CCWGG | 2 cut(s) | 156, 209 |
| BstNSI | RCATGY | 2 cut(s) | 412, 469 |
| BstPI | GGTNACC | 1 cut(s) | 371 |
| BstSCI | CCNGG | 2 cut(s) | 154, 207 |
| BstSLI | GKGCMC | 1 cut(s) | 462 |
| BstV1I | GCAGC | 1 cut(s) | 519 |
| BstX2I | RGATCY | 1 cut(s) | 472 |
| BstYI | RGATCY | 1 cut(s) | 472 |
| BstZ17I | GTATAC | 1 cut(s) | 572 |
| BsuRI | GGCC | 4 cut(s) | 207, 212, 460, 491 |
| BtgI | CCRYGG | 1 cut(s) | 578 |
| BtsCI | GGATG | 3 cut(s) | 52, 334, 537 |
| BtsI | GCAGTG | 1 cut(s) | 352 |
| BtsIMutI | CAGTG | 2 cut(s) | 352, 661 |
| Cac8I | GCNNGC | 2 cut(s) | 390, 458 |
| Cfr13I | GGNCC | 3 cut(s) | 458, 459, 489 |
| Csp6I | GTAC | 2 cut(s) | 445, 604 |
| CviAII | CATG | 6 cut(s) | 409, 466, 485, 493, 545, 579 |
| CviQI | GTAC | 2 cut(s) | 445, 604 |
| DdeI | CTNAG | 2 cut(s) | 124, 393 |
| DpnI | GATC | 4 cut(s) | 96, 316, 474, 561 |
| DpnII | GATC | 4 cut(s) | 94, 314, 472, 559 |
| EaeI | YGGCCR | 1 cut(s) | 205 |
| Eam1104I | CTCTTC | 3 cut(s) | 19, 105, 594 |
| EarI | CTCTTC | 3 cut(s) | 19, 105, 594 |
| Eco130I | CCWWGG | 2 cut(s) | 440, 578 |
| Eco147I | AGGCCT | 1 cut(s) | 212 |
| Eco24I | GRGCYC | 1 cut(s) | 462 |
| Eco57I | CTGAAG | 1 cut(s) | 637 |
| Eco91I | GGTNACC | 1 cut(s) | 371 |
| EcoO65I | GGTNACC | 1 cut(s) | 371 |
| EcoRII | CCWGG | 2 cut(s) | 154, 207 |
| EcoT14I | CCWWGG | 2 cut(s) | 440, 578 |
| EcoT38I | GRGCYC | 1 cut(s) | 462 |
| ErhI | CCWWGG | 2 cut(s) | 440, 578 |
| FaeI | CATG | 6 cut(s) | 412, 469, 488, 496, 548, 582 |
| FatI | CATG | 6 cut(s) | 408, 465, 484, 492, 544, 578 |
| FauI | CCCGC | 1 cut(s) | 449 |
| FblI | GTMKAC | 1 cut(s) | 571 |
| Fnu4HI | GCNGC | 1 cut(s) | 508 |
| FokI | GGATG | 3 cut(s) | 59, 341, 524 |
| FriOI | GRGCYC | 1 cut(s) | 462 |
| Fsp4HI | GCNGC | 1 cut(s) | 508 |
| FspBI | CTAG | 2 cut(s) | 360, 516 |
| GluI | GCNGC | 1 cut(s) | 508 |
| GsaI | CCCAGC | 1 cut(s) | 632 |
| GsuI | CTGGAG | 1 cut(s) | 214 |
| HaeIII | GGCC | 4 cut(s) | 207, 212, 460, 491 |
| HapII | CCGG | 3 cut(s) | 249, 262, 563 |
| Hin1II | CATG | 6 cut(s) | 412, 469, 488, 496, 548, 582 |
| HincII | GTYRAC | 1 cut(s) | 76 |
| HindII | GTYRAC | 1 cut(s) | 76 |
| HinfI | GANTC | 1 cut(s) | 168 |
| HpaI | GTTAAC | 1 cut(s) | 76 |
| HpaII | CCGG | 3 cut(s) | 249, 262, 563 |
| HphI | GGTGA | 2 cut(s) | 251, 439 |
| Hpy166II | GTNNAC | 4 cut(s) | 76, 308, 447, 572 |
| Hpy188I | TCNGA | 1 cut(s) | 243 |
| Hpy188III | TCNNGA | 5 cut(s) | 101, 193, 318, 476, 563 |
| Hpy8I | GTNNAC | 4 cut(s) | 76, 308, 447, 572 |
| Hpy99I | CGWCG | 1 cut(s) | 247 |
| HpyAV | CCTTC | 1 cut(s) | 226 |
| HpyCH4III | ACNGT | 1 cut(s) | 424 |
| HpyCH4V | TGCA | 2 cut(s) | 357, 482 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 488 |
| HpyF3I | CTNAG | 2 cut(s) | 124, 393 |
| Hsp92II | CATG | 6 cut(s) | 412, 469, 488, 496, 548, 582 |
| Kpn2I | TCCGGA | 1 cut(s) | 562 |
| KspAI | GTTAAC | 1 cut(s) | 76 |
| Kzo9I | GATC | 4 cut(s) | 94, 314, 472, 559 |
| LmnI | GCTCC | 3 cut(s) | 244, 344, 637 |
| Lsp1109I | GCAGC | 1 cut(s) | 519 |
| LweI | GCATC | 3 cut(s) | 198, 469, 546 |
| MaeI | CTAG | 2 cut(s) | 360, 516 |
| MaeIII | GTNAC | 1 cut(s) | 371 |
| MalI | GATC | 4 cut(s) | 96, 316, 474, 561 |
| MboI | GATC | 4 cut(s) | 94, 314, 472, 559 |
| MboII | GAAGA | 7 cut(s) | 6, 89, 122, 161, 372, 611, 616 |
| MflI | RGATCY | 1 cut(s) | 472 |
| MhlI | GDGCHC | 1 cut(s) | 462 |
| MlsI | TGGCCA | 1 cut(s) | 207 |
| MluCI | AATT | 1 cut(s) | 550 |
| MluNI | TGGCCA | 1 cut(s) | 207 |
| MmeI | TCCRAC | 2 cut(s) | 204, 266 |
| Mox20I | TGGCCA | 1 cut(s) | 207 |
| MroI | TCCGGA | 1 cut(s) | 562 |
| MscI | TGGCCA | 1 cut(s) | 207 |
| MseI | TTAA | 3 cut(s) | 75, 120, 588 |
| Msp20I | TGGCCA | 1 cut(s) | 207 |
| MspI | CCGG | 3 cut(s) | 249, 262, 563 |
| MspR9I | CCNGG | 2 cut(s) | 156, 209 |
| MvaI | CCWGG | 2 cut(s) | 156, 209 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 488 |
| NcoI | CCATGG | 1 cut(s) | 578 |
| NdeII | GATC | 4 cut(s) | 94, 314, 472, 559 |
| NlaIII | CATG | 6 cut(s) | 412, 469, 488, 496, 548, 582 |
| NlaIV | GGNNCC | 3 cut(s) | 460, 474, 490 |
| NspI | RCATGY | 2 cut(s) | 412, 469 |
| NspV | TTCGAA | 1 cut(s) | 499 |
| PceI | AGGCCT | 1 cut(s) | 212 |
| PciI | ACATGT | 2 cut(s) | 408, 465 |
| PfeI | GAWTC | 1 cut(s) | 168 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 161, 468 |
| PkrI | GCNGC | 1 cut(s) | 509 |
| PscI | ACATGT | 2 cut(s) | 408, 465 |
| Psp6I | CCWGG | 2 cut(s) | 154, 207 |
| PspEI | GGTNACC | 1 cut(s) | 371 |
| PspFI | CCCAGC | 1 cut(s) | 628 |
| PspGI | CCWGG | 2 cut(s) | 154, 207 |
| PspN4I | GGNNCC | 3 cut(s) | 460, 474, 490 |
| PspOMI | GGGCCC | 1 cut(s) | 458 |
| PspPI | GGNCC | 3 cut(s) | 458, 459, 489 |
| PsuI | RGATCY | 1 cut(s) | 472 |
| RsaI | GTAC | 2 cut(s) | 446, 605 |
| RsaNI | GTAC | 2 cut(s) | 445, 604 |
| SaqAI | TTAA | 3 cut(s) | 75, 120, 588 |
| SatI | GCNGC | 1 cut(s) | 508 |
| Sau3AI | GATC | 4 cut(s) | 94, 314, 472, 559 |
| Sau96I | GGNCC | 3 cut(s) | 458, 459, 489 |
| ScaI | AGTACT | 1 cut(s) | 605 |
| ScrFI | CCNGG | 2 cut(s) | 156, 209 |
| SduI | GDGCHC | 1 cut(s) | 462 |
| SetI | ASST | 9 cut(s) | 341, 367, 378, 394, 436, 446, 577, 634, 653 |
| SfaNI | GCATC | 3 cut(s) | 198, 469, 546 |
| SfuI | TTCGAA | 1 cut(s) | 499 |
| Sse9I | AATT | 1 cut(s) | 550 |
| SseBI | AGGCCT | 1 cut(s) | 212 |
| SsiI | CCGC | 1 cut(s) | 456 |
| SspI | AATATT | 1 cut(s) | 255 |
| SspMI | CTAG | 2 cut(s) | 360, 516 |
| StuI | AGGCCT | 1 cut(s) | 212 |
| StyD4I | CCNGG | 2 cut(s) | 154, 207 |
| StyI | CCWWGG | 2 cut(s) | 440, 578 |
| TaaI | ACNGT | 1 cut(s) | 424 |
| TaqI | TCGA | 3 cut(s) | 60, 317, 499 |
| TasI | AATT | 1 cut(s) | 550 |
| TatI | WGTACW | 1 cut(s) | 603 |
| TfiI | GAWTC | 1 cut(s) | 168 |
| Tru1I | TTAA | 3 cut(s) | 75, 120, 588 |
| Tru9I | TTAA | 3 cut(s) | 75, 120, 588 |
| TscAI | CASTG | 2 cut(s) | 359, 661 |
| TseI | GCWGC | 1 cut(s) | 507 |
| TspDTI | ATGAA | 2 cut(s) | 45, 162 |
| TspRI | CASTG | 2 cut(s) | 359, 661 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 161, 468 |
| XceI | RCATGY | 2 cut(s) | 412, 469 |
| XmiI | GTMKAC | 1 cut(s) | 571 |
| XspI | CTAG | 2 cut(s) | 360, 516 |
| ZrmI | AGTACT | 1 cut(s) | 605 |