Rorug05G0542600

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000073
Physical Location & Seq
Reverse (-)
73071353 .. 73084595
13243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0542600.1

Sequence Viewer

Length: 2541 bp
ATGTCAGAGAGAAAAGGGAGGGCAAGTCAGAACGAGTATATAAGGTATGTAACCTGGTACATTTTGTTCATTGAAGGCCTAGAAGGGTGGGGAGCGCAAGATGAAATTAGAGATAGAAGATCAGATTTTGAGAATTCTGAAGAAGAGAGAAGACGTTCAAGAATTTGCAACCTCAGGAAGAAGGCGATAAATGCTTCAAGTAAGTTCACCCATTCTCTTAAGAAAAGAGGAAAAAGAAAAATCGACTACAGGGTTCCATCGGTTTCTATAGAAGATGTACGGGATGCAGCAGAGGAGATTGCTGTCCAAGAATTGCGTCAAAGACTGCTTGACAGGGACTTGTTGCCTGCTAGGCATGATGACTACCATACTTTGTTGAGATTTTTGAAAGCTAGAGACCTTAATATTGACAAAACAATTCAATTATGGGAAGAAATGCTTAAATGGAGAAATGAATTCGGGACAGACACCATTTTGGAGGATTTTGAATTTGGAGAGCTCGATGAAGTATTGCAATATTACCCTCAAGGGTACCATGGTGTTGATAAAGAAGGGAGGCCTGTTTACATAGAGAGACTGGGAAAAGCCCATCCAAGTAGGCTTATGCAAATAACCAGCATAGAGCGATACCTAAAGTACCATGTCCAAGAATTTGAGAGGGCTCTACAGGAAAAATTCCCTGCTTGTTCAATTGCTGCAAAGAGACAGATATGTTCTACAACAACTATACTGGATGTGCAAGGCTTGGGCATGAAAAATTTCACGCGCACTGCTGCAAATCTCCTGGCTTCCATGACAAAGATAGACACCAATTACTATCCTGAGACATTACACCGGATGTACATTGTCAATGCTGGTCCTGGCTTTAAGAAGATGCTTTGGCCGGCCACACAGAAATTTCTTGATGTAAAGACGATTGCTAAAATACAGGTGCTGGAACCCAAATCCTTATGTAAATTACTGGAGGTGATTGATTCAAGTCAGTTGCCAGACTTCCTTGGTGGATCATGTACATGCTCTGCCGAAGGAGGCTGTCTCAAGTCTAGTAAAGGTCCATGGAATGATATCGAGATAATGAAGCTTCTGCATAATGCTGAAGCAACATTTGTGAGGGAAGTAACCAGAGTGTCTAACAACCAGCAGATATTTGACTCGTATGTTCAGATACGGCCACTGAAGGCATCTATCGCCAAATCAGGGTCAGATATTGATGATCCTTGTTCATCACTAGGACGAAGGAGTTCTACACCTCCTGCTTTGGCTGCAGTAGATGAAGAAGCATCAGACCAAGGTGCTTACTACACTTGTGACGATCATTTTCCTCTGGTTGATAAATCCATCACAACTAATCTGGGACATGATCAGGACCAATCACTTGATTGTCGTATGAACAATGGTTCTCGTGAGGCAACATTAAATTCAGAAGATAGTTCGGTCAGCCATCAACTTGACACTGTTAAGGATAAAATTGAGAAGAGAAATTTCCCTCGTGTGGCGAGATTGATGATATCTTTCCTGGTCAGGCTAATACCATTTTCTCATATTTTAAGATTGGAATTTTGGAAAAGGCAGAACAACAATGTTTACCCATCTAATTTGGGGGAAAGCATCTCGGATACTAATTCACCGGCACCTGAAGCTGTGGAAGAAGACCGTGTCCTTCCATGTTTACAGCGTCTTCAACAACTAGAAAAAATATACGAGGAACTCAGCAACAAGCCTGCTACCATTCCTTTAGAAAAGGATCGAATGCTTATGGAATCTTTGGACAGGATTAAGTCCGTTGAATATGATCTTGAGCAAACAAAAAGAGTGTTGCATTCTGCAGTGGTAAAGCAAGTTGAGATTGCTAATTTGCTGGAGAATCTAGACGAGTCCAGATTTCATAGTTTTAGCATTGTTAAGCCGAAATCTGAGATGTATATGGATATATTCTATGCAGCGAAAGAGACTGTTCTGTTGAATAGTCTAAGCCGTGCTTACTTCCTTCAGAACCCAGAAAGCATGGTGTTGAATCAGAGCTCCAGCTTCTGTTTTGCTGCTCTCTTCTTCTTCTTCTTCTTCTTCATTTTGTTGGGTCTCCCTGCTTCTTCTTCATCTTCTCCCACTTTCATTTCAGATGGTATCTTTGAATCTCAGGTTTCTATTGGCCGGAACCTACTGCAGGCCAAGAAAGGTTGTCCAGTAAACTTTGAGTTTTTGAACTACACCATCATCACAAGCCAATGCAAAGGACCACGATACCCTGCTGACAAGTGTTGTGCTTCATTCAAGGAATTGGCTTGCCCTTATACAGATGTATTGAACGACTTGACAAATGAATGTGCTTCTATTATGTTCAGCTACATCAACCTCTATGGAAACTACCCTCCTGGCCTTTTTGCCAATGAGTGCCACGAGGGGAAATTGGGTCTTGCATGCCCTGCATTACCGCCTTCAACTTTGGCTGATGATGTAAACGGGGTTCATACCACCTCCTCTCCATCTCCATTGCCAATGCTCACAGCTGGTTTCCTATTGTTGCTGTTCCGGTTACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4 zf-RING_2

Protein Analysis

846

Amino Acids

96.33

Weight (kDa)

6.07

Isoelectric Point (pI)

52.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO PF00650 172 - 335 8.5e-28 CRAL/TRIO domain
LLG1 PF26578 729 - 805 7.2e-38 LLG1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 531
AccB1I GGYRCC 2 cut(s) 531, 1630
AccII CGCG 1 cut(s) 766
AciI CCGC 1 cut(s) 2432
AclWI GGATC 3 cut(s) 1012, 1208, 1752
AcoI YGGCCR 4 cut(s) 881, 885, 1169, 2149
AcuI CTGAAG 5 cut(s) 159, 1116, 1196, 1656, 1973
AfaI GTAC 6 cut(s) 59, 279, 533, 638, 842, 1012
AfiI CCNNNNNNNGG 3 cut(s) 1197, 1492, 2164
AflII CTTAAG 1 cut(s) 218
AjnI CCWGG 5 cut(s) 53, 783, 859, 1515, 2371
AluBI AGCT 8 cut(s) 392, 499, 1081, 1640, 2022, 2028, 2343, 2507
AluI AGCT 8 cut(s) 392, 499, 1081, 1640, 2022, 2028, 2343, 2507
Alw21I GWGCWC 2 cut(s) 501, 2024
Alw26I GTCTC 7 cut(s) 390, 568, 697, 818, 1040, 1943, 2084
AlwI GGATC 3 cut(s) 1012, 1208, 1752
AlwNI CAGNNNCTG 2 cut(s) 934, 2031
AoxI GGCC 8 cut(s) 76, 557, 881, 885, 1169, 2149, 2166, 2374
ApeKI GCWGC 6 cut(s) 287, 695, 773, 1262, 1940, 2039
Asp700I GAANNNNTTC 3 cut(s) 154, 758, 1240
Asp718I GGTACC 1 cut(s) 531
AspLEI GCGC 2 cut(s) 97, 768
AspS9I GGNCC 4 cut(s) 857, 1052, 1366, 2234
AsuHPI GGTGA 3 cut(s) 199, 979, 1617
AvaII GGWCC 4 cut(s) 857, 1052, 1366, 2234
AxyI CCTNAGG 1 cut(s) 173
BaeI ACNNNNGTAYC 2 cut(s) 523, 556
BanI GGYRCC 2 cut(s) 531, 1630
BanII GRGCYC 3 cut(s) 501, 664, 2024
BarI GAAGNNNNNNTAC 2 cut(s) 1228, 1260
BauI CACGAG 3 cut(s) 1401, 1488, 2396
BbsI GAAGAC 3 cut(s) 157, 1656, 1670
Bbv12I GWGCWC 2 cut(s) 501, 2024
BbvI GCAGC 6 cut(s) 299, 682, 760, 1249, 1952, 2026
BccI CCATC 8 cut(s) 265, 597, 1346, 1449, 1597, 2114, 2219, 2491
BceAI ACGGC 2 cut(s) 1184, 1959
BciT130I CCWGG 5 cut(s) 55, 785, 861, 1517, 2373
BciVI GTATCC 1 cut(s) 1609
BclI TGATCA 1 cut(s) 1360
BcoDI GTCTC 7 cut(s) 390, 568, 697, 818, 1040, 1943, 2084
BfaI CTAG 7 cut(s) 80, 351, 393, 1044, 1229, 1688, 1868
BfmI CTRYAG 6 cut(s) 247, 267, 665, 1263, 1824, 2162
BfrI CTTAAG 1 cut(s) 218
BfuI GTATCC 1 cut(s) 1609
BglI GCCNNNNNGGC 1 cut(s) 352
BisI GCNGC 6 cut(s) 288, 696, 774, 1263, 1941, 2040
BlsI GCNGC 6 cut(s) 289, 697, 775, 1264, 1942, 2041
Bme1390I CCNGG 5 cut(s) 55, 785, 861, 1517, 2373
Bme18I GGWCC 4 cut(s) 857, 1052, 1366, 2234
BmgT120I GGNCC 4 cut(s) 857, 1052, 1366, 2234
BmiI GGNNCC 5 cut(s) 255, 533, 939, 1632, 2156
BmrFI CCNGG 5 cut(s) 55, 785, 861, 1517, 2373
BmrI ACTGGG 1 cut(s) 587
BmsI GCATC 5 cut(s) 274, 864, 1190, 1289, 1617
BmuI ACTGGG 1 cut(s) 587
BpiI GAAGAC 3 cut(s) 157, 1656, 1670
BplI GAGNNNNNCTC 2 cut(s) 1020, 1052
BpmI CTGGAG 3 cut(s) 983, 1880, 2008
BpuEI CTTGAG 3 cut(s) 510, 1022, 1817
BsaI GGTCTC 2 cut(s) 390, 2084
BsaJI CCNNGG 4 cut(s) 535, 997, 1055, 1288
BsaWI WCCGGW 2 cut(s) 834, 2529
BsaXI ACNNNNNCTCC 4 cut(s) 10, 40, 2464, 2494
Bsc4I CCNNNNNNNGG 3 cut(s) 1197, 1492, 2164
Bse118I RCCGGY 2 cut(s) 883, 1627
Bse1I ACTGG 4 cut(s) 582, 735, 966, 2183
Bse21I CCTNAGG 1 cut(s) 173
Bse3DI GCAATG 1 cut(s) 2489
BseBI CCWGG 5 cut(s) 55, 785, 861, 1517, 2373
BseDI CCNNGG 4 cut(s) 535, 997, 1055, 1288
BseGI GGATG 4 cut(s) 289, 589, 739, 843
BseLI CCNNNNNNNGG 3 cut(s) 1197, 1492, 2164
BseMI GCAATG 1 cut(s) 2489
BseMII CTCAG 5 cut(s) 187, 813, 1723, 1905, 2150
BseNI ACTGG 4 cut(s) 582, 735, 966, 2183
BseRI GAGGAG 2 cut(s) 308, 2467
BseXI GCAGC 6 cut(s) 299, 682, 760, 1249, 1952, 2026
Bsh1236I CGCG 1 cut(s) 766
BshFI GGCC 8 cut(s) 78, 559, 883, 887, 1171, 2151, 2168, 2376
BshNI GGYRCC 2 cut(s) 531, 1630
BsiHKAI GWGCWC 2 cut(s) 501, 2024
BsiSI CCGG 5 cut(s) 835, 884, 1628, 2152, 2530
BslFI GGGAC 3 cut(s) 350, 475, 1368
BslI CCNNNNNNNGG 3 cut(s) 1197, 1492, 2164
BsmAI GTCTC 7 cut(s) 390, 568, 697, 818, 1040, 1943, 2084
BsmFI GGGAC 3 cut(s) 350, 475, 1368
BsmI GAATGC 2 cut(s) 1755, 1819
BsnI GGCC 8 cut(s) 78, 559, 883, 887, 1171, 2151, 2168, 2376
Bso31I GGTCTC 2 cut(s) 390, 2084
Bsp1286I GDGCHC 3 cut(s) 501, 664, 2024
Bsp1407I TGTACA 2 cut(s) 840, 1010
Bsp143I GATC 7 cut(s) 119, 1004, 1213, 1312, 1360, 1744, 1792
Bsp19I CCATGG 2 cut(s) 535, 1055
BspACI CCGC 1 cut(s) 2432
BspANI GGCC 8 cut(s) 78, 559, 883, 887, 1171, 2151, 2168, 2376
BspCNI CTCAG 5 cut(s) 186, 814, 1722, 1906, 2149
BspFNI CGCG 1 cut(s) 766
BspLI GGNNCC 5 cut(s) 255, 533, 939, 1632, 2156
BspMAI CTGCAG 3 cut(s) 1267, 1828, 2166
BspPI GGATC 3 cut(s) 1012, 1208, 1752
BspT107I GGYRCC 2 cut(s) 531, 1630
BspTI CTTAAG 1 cut(s) 218
BspTNI GGTCTC 2 cut(s) 390, 2084
BsrDI GCAATG 1 cut(s) 2489
BsrFI RCCGGY 2 cut(s) 883, 1627
BsrGI TGTACA 2 cut(s) 840, 1010
BsrI ACTGG 4 cut(s) 582, 735, 966, 2183
BssAI RCCGGY 2 cut(s) 883, 1627
BssECI CCNNGG 4 cut(s) 535, 997, 1055, 1288
BssMI GATC 7 cut(s) 119, 1004, 1213, 1312, 1360, 1744, 1792
BssSI CACGAG 3 cut(s) 1401, 1488, 2396
BssT1I CCWWGG 4 cut(s) 535, 997, 1055, 1288
Bst2BI CACGAG 3 cut(s) 1401, 1488, 2396
Bst2UI CCWGG 5 cut(s) 55, 785, 861, 1517, 2373
Bst4CI ACNGT 3 cut(s) 1456, 1655, 1954
Bst6I CTCTTC 3 cut(s) 138, 1469, 2051
BstAFI CTTAAG 1 cut(s) 218
BstAPI GCANNNNNTGC 1 cut(s) 2423
BstAUI TGTACA 2 cut(s) 840, 1010
BstC8I GCNNGC 6 cut(s) 348, 885, 1722, 2166, 2284, 2419
BstDEI CTNAG 6 cut(s) 173, 822, 1709, 1914, 1970, 2136
BstDSI CCRYGG 2 cut(s) 535, 1055
BstENI CCTNNNNNAGG 1 cut(s) 2162
BstF5I GGATG 4 cut(s) 289, 589, 739, 843
BstFNI CGCG 1 cut(s) 766
BstHHI GCGC 2 cut(s) 97, 768
BstKTI GATC 7 cut(s) 122, 1007, 1216, 1315, 1363, 1747, 1795
BstMAI GTCTC 7 cut(s) 390, 568, 697, 818, 1040, 1943, 2084
BstMBI GATC 7 cut(s) 119, 1004, 1213, 1312, 1360, 1744, 1792
BstMWI GCNNNNNNNGC 6 cut(s) 191, 352, 1187, 1262, 1637, 2423
BstNI CCWGG 5 cut(s) 55, 785, 861, 1517, 2373
BstNSI RCATGY 2 cut(s) 1017, 2421
BstSCI CCNGG 5 cut(s) 53, 783, 859, 1515, 2371
BstSFI CTRYAG 6 cut(s) 247, 267, 665, 1263, 1824, 2162
BstUI CGCG 1 cut(s) 766
BstV1I GCAGC 6 cut(s) 299, 682, 760, 1249, 1952, 2026
BstV2I GAAGAC 3 cut(s) 157, 1656, 1670
Bsu36I CCTNAGG 1 cut(s) 173
BsuI GTATCC 1 cut(s) 1609
BsuRI GGCC 8 cut(s) 78, 559, 883, 887, 1171, 2151, 2168, 2376
BtgI CCRYGG 2 cut(s) 535, 1055
BtsCI GGATG 4 cut(s) 289, 589, 739, 843
BtsI GCAGTG 2 cut(s) 768, 1833
BtsIMutI CAGTG 4 cut(s) 768, 1172, 1452, 1833
Cac8I GCNNGC 6 cut(s) 348, 885, 1722, 2166, 2284, 2419
CaiI CAGNNNCTG 2 cut(s) 934, 2031
CfoI GCGC 2 cut(s) 97, 768
Cfr10I RCCGGY 2 cut(s) 883, 1627
Cfr13I GGNCC 4 cut(s) 857, 1052, 1366, 2234
CseI GACGC 2 cut(s) 305, 1664
CsiI ACCWGGT 1 cut(s) 53
Csp6I GTAC 6 cut(s) 58, 278, 532, 637, 841, 1011
CviQI GTAC 6 cut(s) 58, 278, 532, 637, 841, 1011
DdeI CTNAG 6 cut(s) 173, 822, 1709, 1914, 1970, 2136
DpnI GATC 7 cut(s) 121, 1006, 1215, 1314, 1362, 1746, 1794
DpnII GATC 7 cut(s) 119, 1004, 1213, 1312, 1360, 1744, 1792
EaeI YGGCCR 4 cut(s) 881, 885, 1169, 2149
Eam1104I CTCTTC 3 cut(s) 138, 1469, 2051
EarI CTCTTC 3 cut(s) 138, 1469, 2051
Ecl136II GAGCTC 2 cut(s) 499, 2022
Eco130I CCWWGG 4 cut(s) 535, 997, 1055, 1288
Eco147I AGGCCT 2 cut(s) 78, 559
Eco24I GRGCYC 3 cut(s) 501, 664, 2024
Eco31I GGTCTC 2 cut(s) 390, 2084
Eco32I GATATC 2 cut(s) 1066, 1509
Eco47I GGWCC 4 cut(s) 857, 1052, 1366, 2234
Eco53kI GAGCTC 2 cut(s) 499, 2022
Eco57I CTGAAG 5 cut(s) 159, 1116, 1196, 1656, 1973
Eco81I CCTNAGG 1 cut(s) 173
EcoICRI GAGCTC 2 cut(s) 499, 2022
EcoNI CCTNNNNNAGG 1 cut(s) 2162
EcoRI GAATTC 2 cut(s) 133, 455
EcoRII CCWGG 5 cut(s) 53, 783, 859, 1515, 2371
EcoRV GATATC 2 cut(s) 1066, 1509
EcoT14I CCWWGG 4 cut(s) 535, 997, 1055, 1288
EcoT38I GRGCYC 3 cut(s) 501, 664, 2024
ErhI CCWWGG 4 cut(s) 535, 997, 1055, 1288
FalI AAGNNNNNCTT 4 cut(s) 423, 455, 1963, 1995
FaqI GGGAC 3 cut(s) 350, 475, 1368
FbaI TGATCA 1 cut(s) 1360
Fnu4HI GCNGC 6 cut(s) 288, 696, 774, 1263, 1941, 2040
FokI GGATG 4 cut(s) 296, 576, 746, 850
FriOI GRGCYC 3 cut(s) 501, 664, 2024
FseI GGCCGGCC 1 cut(s) 887
Fsp4HI GCNGC 6 cut(s) 288, 696, 774, 1263, 1941, 2040
FspBI CTAG 7 cut(s) 80, 351, 393, 1044, 1229, 1688, 1868
GlaI GCGC 2 cut(s) 96, 767
GluI GCNGC 6 cut(s) 288, 696, 774, 1263, 1941, 2040
GsuI CTGGAG 3 cut(s) 983, 1880, 2008
HaeIII GGCC 8 cut(s) 78, 559, 883, 887, 1171, 2151, 2168, 2376
HapII CCGG 5 cut(s) 835, 884, 1628, 2152, 2530
HgaI GACGC 2 cut(s) 305, 1664
HhaI GCGC 2 cut(s) 97, 768
Hin6I GCGC 2 cut(s) 95, 766
HinP1I GCGC 2 cut(s) 95, 766
HindIII AAGCTT 1 cut(s) 1079
HinfI GANTC 7 cut(s) 974, 1151, 1760, 1864, 1874, 2014, 2132
HpaII CCGG 5 cut(s) 835, 884, 1628, 2152, 2530
HphI GGTGA 3 cut(s) 199, 979, 1617
Hpy166II GTNNAC 6 cut(s) 207, 565, 1585, 1670, 2188, 2458
Hpy8I GTNNAC 6 cut(s) 207, 565, 1585, 1670, 2188, 2458
HpyCH4III ACNGT 3 cut(s) 1456, 1655, 1954
HpyCH4IV ACGT 1 cut(s) 154
HpyF10VI GCNNNNNNNGC 6 cut(s) 191, 352, 1187, 1262, 1637, 2423
HpyF3I CTNAG 6 cut(s) 173, 822, 1709, 1914, 1970, 2136
HpySE526I ACGT 1 cut(s) 154
HspAI GCGC 2 cut(s) 95, 766
KpnI GGTACC 1 cut(s) 535
KroI GCCGGC 1 cut(s) 883
KroNI GCCGGC 1 cut(s) 885
Ksp22I TGATCA 1 cut(s) 1360
Kzo9I GATC 7 cut(s) 119, 1004, 1213, 1312, 1360, 1744, 1792
LmnI GCTCC 2 cut(s) 92, 2027
Lsp1109I GCAGC 6 cut(s) 299, 682, 760, 1249, 1952, 2026
LweI GCATC 5 cut(s) 274, 864, 1190, 1289, 1617
MabI ACCWGGT 1 cut(s) 53
MaeI CTAG 7 cut(s) 80, 351, 393, 1044, 1229, 1688, 1868
MaeII ACGT 1 cut(s) 154
MaeIII GTNAC 4 cut(s) 49, 1117, 1307, 2532
MalI GATC 7 cut(s) 121, 1006, 1215, 1314, 1362, 1746, 1794
MboI GATC 7 cut(s) 119, 1004, 1213, 1312, 1360, 1744, 1792
MfeI CAATTG 1 cut(s) 690
MhlI GDGCHC 3 cut(s) 501, 664, 2024
MlyI GAGTC 2 cut(s) 1145, 1883
MroNI GCCGGC 1 cut(s) 883
MroXI GAANNNNTTC 3 cut(s) 154, 758, 1240
MseI TTAA 9 cut(s) 219, 402, 441, 867, 1415, 1458, 1547, 1776, 1902
MslI CAYNNNNRTG 1 cut(s) 1012
MspA1I CMGCKG 1 cut(s) 2507
MspCI CTTAAG 1 cut(s) 218
MspI CCGG 5 cut(s) 835, 884, 1628, 2152, 2530
MspR9I CCNGG 5 cut(s) 55, 785, 861, 1517, 2373
MunI CAATTG 1 cut(s) 690
Mva1269I GAATGC 2 cut(s) 1755, 1819
MvaI CCWGG 5 cut(s) 55, 785, 861, 1517, 2373
MvnI CGCG 1 cut(s) 766
MwoI GCNNNNNNNGC 6 cut(s) 191, 352, 1187, 1262, 1637, 2423
NaeI GCCGGC 1 cut(s) 885
NcoI CCATGG 2 cut(s) 535, 1055
NdeII GATC 7 cut(s) 119, 1004, 1213, 1312, 1360, 1744, 1792
NgoMIV GCCGGC 1 cut(s) 883
NlaIV GGNNCC 5 cut(s) 255, 533, 939, 1632, 2156
NmuCI GTSAC 1 cut(s) 1307
NspI RCATGY 2 cut(s) 1017, 2421
PaeI GCATGC 1 cut(s) 2421
PceI AGGCCT 2 cut(s) 78, 559
PctI GAATGC 2 cut(s) 1755, 1819
PdiI GCCGGC 1 cut(s) 885
PdmI GAANNNNTTC 3 cut(s) 154, 758, 1240
PfeI GAWTC 5 cut(s) 974, 1760, 1864, 2014, 2132
PflFI GACNNNGTC 1 cut(s) 1655
PkrI GCNGC 6 cut(s) 289, 697, 775, 1264, 1942, 2041
PleI GAGTC 2 cut(s) 1145, 1882
PpsI GAGTC 2 cut(s) 1145, 1882
Psp124BI GAGCTC 2 cut(s) 501, 2024
Psp6I CCWGG 5 cut(s) 53, 783, 859, 1515, 2371
PspGI CCWGG 5 cut(s) 53, 783, 859, 1515, 2371
PspN4I GGNNCC 5 cut(s) 255, 533, 939, 1632, 2156
PspPI GGNCC 4 cut(s) 857, 1052, 1366, 2234
PsrI GAACNNNNNNTAC 4 cut(s) 50, 82, 2448, 2480
PstI CTGCAG 3 cut(s) 1267, 1828, 2166
PstNI CAGNNNCTG 2 cut(s) 934, 2031
PsyI GACNNNGTC 1 cut(s) 1655
PvuII CAGCTG 1 cut(s) 2507
RigI GGCCGGCC 1 cut(s) 887
RsaI GTAC 6 cut(s) 59, 279, 533, 638, 842, 1012
RsaNI GTAC 6 cut(s) 58, 278, 532, 637, 841, 1011
RseI CAYNNNNRTG 1 cut(s) 1012
SacI GAGCTC 2 cut(s) 501, 2024
SaqAI TTAA 9 cut(s) 219, 402, 441, 867, 1415, 1458, 1547, 1776, 1902
SatI GCNGC 6 cut(s) 288, 696, 774, 1263, 1941, 2040
Sau3AI GATC 7 cut(s) 119, 1004, 1213, 1312, 1360, 1744, 1792
Sau96I GGNCC 4 cut(s) 857, 1052, 1366, 2234
SchI GAGTC 2 cut(s) 1145, 1883
ScrFI CCNGG 5 cut(s) 55, 785, 861, 1517, 2373
SduI GDGCHC 3 cut(s) 501, 664, 2024
SexAI ACCWGGT 1 cut(s) 53
SfaNI GCATC 5 cut(s) 274, 864, 1190, 1289, 1617
SfcI CTRYAG 6 cut(s) 247, 267, 665, 1263, 1824, 2162
SinI GGWCC 4 cut(s) 857, 1052, 1366, 2234
SmiMI CAYNNNNRTG 1 cut(s) 1012
SmlI CTYRAG 4 cut(s) 218, 525, 1037, 1796
SmoI CTYRAG 4 cut(s) 218, 525, 1037, 1796
SphI GCATGC 1 cut(s) 2421
SseBI AGGCCT 2 cut(s) 78, 559
SsiI CCGC 1 cut(s) 2432
SspI AATATT 2 cut(s) 406, 518
SspMI CTAG 7 cut(s) 80, 351, 393, 1044, 1229, 1688, 1868
SstI GAGCTC 2 cut(s) 501, 2024
StuI AGGCCT 2 cut(s) 78, 559
StyD4I CCNGG 5 cut(s) 53, 783, 859, 1515, 2371
StyI CCWWGG 4 cut(s) 535, 997, 1055, 1288
TaaI ACNGT 3 cut(s) 1456, 1655, 1954
TaiI ACGT 1 cut(s) 157
TaqI TCGA 4 cut(s) 243, 501, 1068, 1747
TaqII GACCGA 1 cut(s) 1423
TatI WGTACW 2 cut(s) 840, 1010
TfiI GAWTC 5 cut(s) 974, 1760, 1864, 2014, 2132
Tru1I TTAA 9 cut(s) 219, 402, 441, 867, 1415, 1458, 1547, 1776, 1902
Tru9I TTAA 9 cut(s) 219, 402, 441, 867, 1415, 1458, 1547, 1776, 1902
TscAI CASTG 4 cut(s) 775, 1179, 1459, 1833
TseFI GTSAC 1 cut(s) 1307
TseI GCWGC 6 cut(s) 287, 695, 773, 1262, 1940, 2039
Tsp45I GTSAC 1 cut(s) 1307
TspGWI ACGGA 1 cut(s) 1771
TspRI CASTG 4 cut(s) 775, 1179, 1459, 1833
Tth111I GACNNNGTC 1 cut(s) 1655
Vha464I CTTAAG 1 cut(s) 218
VpaK11BI GGWCC 4 cut(s) 857, 1052, 1366, 2234
XagI CCTNNNNNAGG 1 cut(s) 2162
XbaI TCTAGA 1 cut(s) 1867
XceI RCATGY 2 cut(s) 1017, 2421
XmnI GAANNNNTTC 3 cut(s) 154, 758, 1240
XspI CTAG 7 cut(s) 80, 351, 393, 1044, 1229, 1688, 1868
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.