Rh2AG513400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000073
Physical Location & Seq
Forward (+)
74104481 .. 74105455
975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG513400.1

Sequence Viewer

Length: 975 bp
ATGGGACACACCCAATTTATCTTTGATAACTCAATCTGTGAGTTTGTCCCACTACCACCACCTCACCCTTACACACCCAATCAGACACATAACCCTATCCAAACACAATATGCCCCACTCCATTTGTCTTCCACTACCCATCTTCAGAACCCGACCCTTCCTGACTTTTCAAACTTGCCCATCATCACACCCAATACACAAGCGGCTCCCAACCCAACACATACACAAACCATAACCATACCTCCTGCATCACCACAAAATGACACCTCCATCACTGGGATTGCATCCTTTCTCGATCAACTCCGCCTAAAACATATTGCTGAGGAAATCCCAAATGTTTCTGATCGGAAGAGTAAGAAATCAAAGATCAGATCTTTATCCGCTTTTGATCCAGAGCTTTCCTTGGCTTTTGCTTCGGATCTTCACCAAACCAGTTTGACTCCTGCTAGTTTCTTGTTGGATGATTCGAGTCCTTGCAGATCTGTTGCTGCTCGGAAAACTAGAGGAAGGGGAAGAACCCGTGGTACCAGAGGTGGTGGTCGCGGTGGACGCCGAAAAGTGTCTGATCCAGCTTCGGCAACTATTCCTGTGAGGGGAACATCGCAGTCTGAAAGGGAAGCCCTCCTAAGAGAAACCCTTGCAACTACTGAAGGTCTTTCTATGGTACAACTAATTTTAGCAGAGAACTCTCACCCTACTCCTGCCCCACTGGATCTCAACTCATTAACCCACCACTCTTCAAGTCAAATCACACAGATTCAAAGCTCTGATCTTCATGGATCACTTCTCATCCAAACTTCGGATCAGAACATACTTCTGGCTGGAGACTCTCAGGATTTTGTGCTGCCTCCTCCTCCCCTCTTGGCTTTGGAAGATGATCCTTTGCCTCCTTCTGAAAACCCCCAAGCTGATCTTGTCCCTCAGACGGATCAAGGCACCGGTGACTGGCCTGATGCAGTCACGGGTCCACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

324

Amino Acids

34.89

Weight (kDa)

5.69

Isoelectric Point (pI)

45.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 524
AccB1I GGYRCC 2 cut(s) 524, 935
AccII CGCG 1 cut(s) 543
AciI CCGC 4 cut(s) 203, 304, 381, 543
AclWI GGATC 8 cut(s) 383, 426, 560, 720, 787, 810, 872, 936
AcuI CTGAAG 2 cut(s) 128, 669
AcyI GRCGYC 1 cut(s) 550
AfaI GTAC 2 cut(s) 526, 666
AfiI CCNNNNNNNGG 5 cut(s) 276, 593, 799, 925, 945
AgeI ACCGGT 1 cut(s) 938
AgsI TTSAA 3 cut(s) 171, 741, 761
AluBI AGCT 4 cut(s) 397, 572, 765, 908
AluI AGCT 4 cut(s) 397, 572, 765, 908
Alw26I GTCTC 1 cut(s) 819
AlwI GGATC 8 cut(s) 383, 426, 560, 720, 787, 810, 872, 936
AoxI GGCC 1 cut(s) 947
ApeKI GCWGC 2 cut(s) 488, 844
AsiGI ACCGGT 1 cut(s) 938
Asp718I GGTACC 1 cut(s) 524
AspS9I GGNCC 1 cut(s) 965
AsuHPI GGTGA 5 cut(s) 56, 243, 416, 683, 953
AvaII GGWCC 1 cut(s) 965
BanI GGYRCC 2 cut(s) 524, 935
BbsI GAAGAC 1 cut(s) 120
BbvCI CCTCAGC 1 cut(s) 321
BbvI GCAGC 2 cut(s) 475, 831
BccI CCATC 3 cut(s) 147, 188, 278
BcoDI GTCTC 1 cut(s) 819
BfaI CTAG 2 cut(s) 447, 501
BglII AGATCT 2 cut(s) 371, 479
BisI GCNGC 3 cut(s) 204, 489, 845
BlsI GCNGC 3 cut(s) 205, 490, 846
Bme18I GGWCC 1 cut(s) 965
BmgT120I GGNCC 1 cut(s) 965
BmiI GGNNCC 4 cut(s) 207, 526, 937, 966
BmrI ACTGGG 1 cut(s) 285
BmsI GCATC 3 cut(s) 257, 293, 943
BmuI ACTGGG 1 cut(s) 285
BpiI GAAGAC 1 cut(s) 120
BpmI CTGGAG 1 cut(s) 843
Bpu10I CCTNAGC 1 cut(s) 321
BsaBI GATNNNNATC 1 cut(s) 376
BsaHI GRCGYC 1 cut(s) 550
BsaJI CCNNGG 2 cut(s) 402, 520
BsaWI WCCGGW 1 cut(s) 938
BsaXI ACNNNNNCTCC 2 cut(s) 226, 256
Bsc4I CCNNNNNNNGG 5 cut(s) 276, 593, 799, 925, 945
Bse118I RCCGGY 1 cut(s) 938
Bse1I ACTGG 4 cut(s) 280, 432, 714, 950
Bse8I GATNNNNATC 1 cut(s) 376
BseDI CCNNGG 2 cut(s) 402, 520
BseGI GGATG 3 cut(s) 284, 466, 789
BseJI GATNNNNATC 1 cut(s) 376
BseLI CCNNNNNNNGG 5 cut(s) 276, 593, 799, 925, 945
BseMII CTCAG 3 cut(s) 312, 845, 935
BseNI ACTGG 4 cut(s) 280, 432, 714, 950
BseRI GAGGAG 2 cut(s) 840, 843
BseXI GCAGC 2 cut(s) 475, 831
Bsh1236I CGCG 1 cut(s) 543
BshFI GGCC 1 cut(s) 949
BshNI GGYRCC 2 cut(s) 524, 935
BshTI ACCGGT 1 cut(s) 938
BsiSI CCGG 1 cut(s) 939
BslFI GGGAC 3 cut(s) 18, 32, 902
BslI CCNNNNNNNGG 5 cut(s) 276, 593, 799, 925, 945
BsmAI GTCTC 1 cut(s) 819
BsmFI GGGAC 3 cut(s) 18, 32, 902
BsnI GGCC 1 cut(s) 949
BspACI CCGC 4 cut(s) 203, 304, 381, 543
BspANI GGCC 1 cut(s) 949
BspCNI CTCAG 3 cut(s) 313, 844, 934
BspFNI CGCG 1 cut(s) 543
BspLI GGNNCC 4 cut(s) 207, 526, 937, 966
BspPI GGATC 8 cut(s) 383, 426, 560, 720, 787, 810, 872, 936
BspT107I GGYRCC 2 cut(s) 524, 935
BsrFI RCCGGY 1 cut(s) 938
BsrI ACTGG 4 cut(s) 280, 432, 714, 950
BssAI RCCGGY 1 cut(s) 938
BssECI CCNNGG 2 cut(s) 402, 520
BssNI GRCGYC 1 cut(s) 550
BssT1I CCWWGG 1 cut(s) 402
Bst6I CTCTTC 2 cut(s) 344, 742
BstACI GRCGYC 1 cut(s) 550
BstDEI CTNAG 4 cut(s) 321, 626, 831, 921
BstDSI CCRYGG 1 cut(s) 520
BstF5I GGATG 3 cut(s) 284, 466, 789
BstFNI CGCG 1 cut(s) 543
BstMAI GTCTC 1 cut(s) 819
BstMWI GCNNNNNNNGC 1 cut(s) 549
BstUI CGCG 1 cut(s) 543
BstV1I GCAGC 2 cut(s) 475, 831
BstV2I GAAGAC 1 cut(s) 120
BstX2I RGATCY 4 cut(s) 371, 418, 479, 712
BstYI RGATCY 4 cut(s) 371, 418, 479, 712
BsuRI GGCC 1 cut(s) 949
BtgI CCRYGG 1 cut(s) 520
BtgZI GCGATG 1 cut(s) 585
BtsCI GGATG 3 cut(s) 284, 466, 789
BtsIMutI CAGTG 2 cut(s) 273, 707
Cfr10I RCCGGY 1 cut(s) 938
Cfr13I GGNCC 1 cut(s) 965
CseI GACGC 1 cut(s) 558
Csp6I GTAC 2 cut(s) 525, 665
CspAI ACCGGT 1 cut(s) 938
CspCI CAANNNNNGTGG 2 cut(s) 105, 140
CviAII CATG 2 cut(s) 776, 972
CviQI GTAC 2 cut(s) 525, 665
DdeI CTNAG 4 cut(s) 321, 626, 831, 921
Eam1104I CTCTTC 2 cut(s) 344, 742
EarI CTCTTC 2 cut(s) 344, 742
EciI GGCGGA 1 cut(s) 293
Eco130I CCWWGG 1 cut(s) 402
Eco47I GGWCC 1 cut(s) 965
Eco57I CTGAAG 2 cut(s) 128, 669
EcoT14I CCWWGG 1 cut(s) 402
ErhI CCWWGG 1 cut(s) 402
FaeI CATG 2 cut(s) 779, 975
FalI AAGNNNNNCTT 2 cut(s) 897, 929
FaqI GGGAC 3 cut(s) 18, 32, 902
FatI CATG 2 cut(s) 775, 971
Fnu4HI GCNGC 3 cut(s) 204, 489, 845
FokI GGATG 3 cut(s) 271, 473, 776
Fsp4HI GCNGC 3 cut(s) 204, 489, 845
FspBI CTAG 2 cut(s) 447, 501
GluI GCNGC 3 cut(s) 204, 489, 845
GsuI CTGGAG 1 cut(s) 843
HaeIII GGCC 1 cut(s) 949
HapII CCGG 1 cut(s) 939
HgaI GACGC 1 cut(s) 558
Hin1I GRCGYC 1 cut(s) 550
Hin1II CATG 2 cut(s) 779, 975
HinfI GANTC 5 cut(s) 439, 464, 469, 757, 827
HpaII CCGG 1 cut(s) 939
HphI GGTGA 5 cut(s) 56, 243, 416, 683, 953
Hpy166II GTNNAC 2 cut(s) 548, 968
Hpy188III TCNNGA 4 cut(s) 161, 293, 392, 833
Hpy8I GTNNAC 2 cut(s) 548, 968
HpyAV CCTTC 4 cut(s) 167, 501, 644, 900
HpyCH4V TGCA 5 cut(s) 248, 284, 477, 641, 956
HpyF10VI GCNNNNNNNGC 1 cut(s) 549
HpyF3I CTNAG 4 cut(s) 321, 626, 831, 921
Hsp92I GRCGYC 1 cut(s) 550
Hsp92II CATG 2 cut(s) 779, 975
KpnI GGTACC 1 cut(s) 528
LmnI GCTCC 1 cut(s) 211
Lsp1109I GCAGC 2 cut(s) 475, 831
LweI GCATC 3 cut(s) 257, 293, 943
MaeI CTAG 2 cut(s) 447, 501
MaeIII GTNAC 2 cut(s) 941, 958
MboII GAAGA 8 cut(s) 120, 134, 361, 413, 525, 729, 764, 884
MflI RGATCY 4 cut(s) 371, 418, 479, 712
MluCI AATT 2 cut(s) 14, 672
MlyI GAGTC 3 cut(s) 433, 478, 821
MmeI TCCRAC 1 cut(s) 438
MseI TTAA 1 cut(s) 725
MspI CCGG 1 cut(s) 939
MvnI CGCG 1 cut(s) 543
MwoI GCNNNNNNNGC 1 cut(s) 549
NlaIII CATG 2 cut(s) 779, 975
NlaIV GGNNCC 4 cut(s) 207, 526, 937, 966
NmuCI GTSAC 2 cut(s) 941, 958
PfeI GAWTC 2 cut(s) 464, 757
PinAI ACCGGT 1 cut(s) 938
PkrI GCNGC 3 cut(s) 205, 490, 846
PleI GAGTC 3 cut(s) 433, 477, 821
PpsI GAGTC 3 cut(s) 433, 477, 821
PspN4I GGNNCC 4 cut(s) 207, 526, 937, 966
PspPI GGNCC 1 cut(s) 965
PsrI GAACNNNNNNTAC 2 cut(s) 508, 540
PsuI RGATCY 4 cut(s) 371, 418, 479, 712
RsaI GTAC 2 cut(s) 526, 666
RsaNI GTAC 2 cut(s) 525, 665
SaqAI TTAA 1 cut(s) 725
SatI GCNGC 3 cut(s) 204, 489, 845
Sau96I GGNCC 1 cut(s) 965
SchI GAGTC 3 cut(s) 433, 478, 821
SetI ASST 9 cut(s) 64, 244, 269, 399, 535, 574, 655, 767, 910
SfaNI GCATC 3 cut(s) 257, 293, 943
SgrAI CRCCGGYG 1 cut(s) 938
SinI GGWCC 1 cut(s) 965
Sse9I AATT 2 cut(s) 14, 672
SsiI CCGC 4 cut(s) 203, 304, 381, 543
SspMI CTAG 2 cut(s) 447, 501
StyI CCWWGG 1 cut(s) 402
TaqI TCGA 2 cut(s) 294, 467
TasI AATT 2 cut(s) 14, 672
TauI GCSGC 1 cut(s) 206
TfiI GAWTC 2 cut(s) 464, 757
Tru1I TTAA 1 cut(s) 725
Tru9I TTAA 1 cut(s) 725
TscAI CASTG 2 cut(s) 280, 714
TseFI GTSAC 2 cut(s) 941, 958
TseI GCWGC 2 cut(s) 488, 844
Tsp45I GTSAC 2 cut(s) 941, 958
TspDTI ATGAA 1 cut(s) 764
TspGWI ACGGA 1 cut(s) 941
TspRI CASTG 2 cut(s) 280, 714
VpaK11BI GGWCC 1 cut(s) 965
XspI CTAG 2 cut(s) 447, 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.