Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 377 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 357 |
| AciI | CCGC | 1 cut(s) | 396 |
| AclWI | GGATC | 3 cut(s) | 356, 369, 443 |
| AcsI | RAATTY | 2 cut(s) | 150, 184 |
| AcuI | CTGAAG | 1 cut(s) | 387 |
| AdeI | CACNNNGTG | 1 cut(s) | 377 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 357, 417, 469 |
| AflIII | ACRYGT | 1 cut(s) | 354 |
| AgsI | TTSAA | 2 cut(s) | 183, 478 |
| AluBI | AGCT | 5 cut(s) | 46, 258, 293, 325, 331 |
| AluI | AGCT | 5 cut(s) | 46, 258, 293, 325, 331 |
| AlwI | GGATC | 3 cut(s) | 356, 369, 443 |
| AoxI | GGCC | 2 cut(s) | 444, 550 |
| ApoI | RAATTY | 2 cut(s) | 150, 184 |
| AspS9I | GGNCC | 2 cut(s) | 444, 550 |
| BaeGI | GKGCMC | 1 cut(s) | 382 |
| BamHI | GGATCC | 1 cut(s) | 361 |
| BanI | GGYRCC | 1 cut(s) | 377 |
| BanII | GRGCYC | 1 cut(s) | 84 |
| BbsI | GAAGAC | 1 cut(s) | 91 |
| BccI | CCATC | 2 cut(s) | 281, 541 |
| BciVI | GTATCC | 2 cut(s) | 138, 470 |
| BfaI | CTAG | 2 cut(s) | 122, 315 |
| BfuI | GTATCC | 2 cut(s) | 138, 470 |
| BisI | GCNGC | 1 cut(s) | 397 |
| BlpI | GCTNAGC | 1 cut(s) | 78 |
| BlsI | GCNGC | 1 cut(s) | 398 |
| BmgT120I | GGNCC | 2 cut(s) | 444, 550 |
| BmiI | GGNNCC | 2 cut(s) | 363, 379 |
| BmsI | GCATC | 1 cut(s) | 37 |
| BpiI | GAAGAC | 1 cut(s) | 91 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 78 |
| BpuEI | CTTGAG | 1 cut(s) | 311 |
| BsaJI | CCNNGG | 1 cut(s) | 467 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 245, 275 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 357, 417, 469 |
| BseDI | CCNNGG | 1 cut(s) | 467 |
| BseGI | GGATG | 2 cut(s) | 28, 199 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 357, 417, 469 |
| BseMII | CTCAG | 1 cut(s) | 69 |
| BseRI | GAGGAG | 1 cut(s) | 250 |
| BseSI | GKGCMC | 1 cut(s) | 382 |
| BseYI | CCCAGC | 1 cut(s) | 46 |
| BsgI | GTGCAG | 1 cut(s) | 220 |
| BshFI | GGCC | 2 cut(s) | 446, 552 |
| BshNI | GGYRCC | 1 cut(s) | 377 |
| BslFI | GGGAC | 3 cut(s) | 227, 253, 283 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 357, 417, 469 |
| BsmFI | GGGAC | 3 cut(s) | 227, 253, 283 |
| BsnI | GGCC | 2 cut(s) | 446, 552 |
| Bsp1286I | GDGCHC | 2 cut(s) | 84, 382 |
| Bsp143I | GATC | 3 cut(s) | 218, 361, 448 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 78 |
| Bsp19I | CCATGG | 1 cut(s) | 467 |
| BspACI | CCGC | 1 cut(s) | 396 |
| BspANI | GGCC | 2 cut(s) | 446, 552 |
| BspCNI | CTCAG | 1 cut(s) | 70 |
| BspLI | GGNNCC | 2 cut(s) | 363, 379 |
| BspPI | GGATC | 3 cut(s) | 356, 369, 443 |
| BspT107I | GGYRCC | 1 cut(s) | 377 |
| BssECI | CCNNGG | 1 cut(s) | 467 |
| BssMI | GATC | 3 cut(s) | 218, 361, 448 |
| BssT1I | CCWWGG | 1 cut(s) | 467 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 377 |
| BstC8I | GCNNGC | 1 cut(s) | 108 |
| BstDEI | CTNAG | 1 cut(s) | 78 |
| BstDSI | CCRYGG | 1 cut(s) | 467 |
| BstF5I | GGATG | 2 cut(s) | 28, 199 |
| BstKTI | GATC | 3 cut(s) | 221, 364, 451 |
| BstMBI | GATC | 3 cut(s) | 218, 361, 448 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 337, 377 |
| BstNSI | RCATGY | 1 cut(s) | 358 |
| BstSLI | GKGCMC | 1 cut(s) | 382 |
| BstV2I | GAAGAC | 1 cut(s) | 91 |
| BstX2I | RGATCY | 1 cut(s) | 361 |
| BstYI | RGATCY | 1 cut(s) | 361 |
| BsuI | GTATCC | 2 cut(s) | 138, 470 |
| BsuRI | GGCC | 2 cut(s) | 446, 552 |
| BtgI | CCRYGG | 1 cut(s) | 467 |
| BtsCI | GGATG | 2 cut(s) | 28, 199 |
| BtsI | GCAGTG | 1 cut(s) | 232 |
| BtsIMutI | CAGTG | 2 cut(s) | 232, 533 |
| Cac8I | GCNNGC | 1 cut(s) | 108 |
| Cfr13I | GGNCC | 2 cut(s) | 444, 550 |
| CviAII | CATG | 6 cut(s) | 265, 355, 374, 407, 434, 468 |
| DdeI | CTNAG | 1 cut(s) | 78 |
| DpnI | GATC | 3 cut(s) | 220, 363, 450 |
| DpnII | GATC | 3 cut(s) | 218, 361, 448 |
| DraIII | CACNNNGTG | 1 cut(s) | 377 |
| Eco130I | CCWWGG | 1 cut(s) | 467 |
| Eco24I | GRGCYC | 1 cut(s) | 84 |
| Eco57I | CTGAAG | 1 cut(s) | 387 |
| EcoT14I | CCWWGG | 1 cut(s) | 467 |
| EcoT38I | GRGCYC | 1 cut(s) | 84 |
| ErhI | CCWWGG | 1 cut(s) | 467 |
| FaeI | CATG | 6 cut(s) | 268, 358, 377, 410, 437, 471 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 83, 115 |
| FaqI | GGGAC | 3 cut(s) | 227, 253, 283 |
| FatI | CATG | 6 cut(s) | 264, 354, 373, 406, 433, 467 |
| Fnu4HI | GCNGC | 1 cut(s) | 397 |
| FokI | GGATG | 2 cut(s) | 15, 206 |
| FriOI | GRGCYC | 1 cut(s) | 84 |
| Fsp4HI | GCNGC | 1 cut(s) | 397 |
| FspBI | CTAG | 2 cut(s) | 122, 315 |
| GluI | GCNGC | 1 cut(s) | 397 |
| GsaI | CCCAGC | 1 cut(s) | 50 |
| HaeIII | GGCC | 2 cut(s) | 446, 552 |
| Hin1II | CATG | 6 cut(s) | 268, 358, 377, 410, 437, 471 |
| HinfI | GANTC | 3 cut(s) | 18, 62, 437 |
| Hpy188I | TCNGA | 3 cut(s) | 23, 162, 223 |
| Hpy188III | TCNNGA | 4 cut(s) | 122, 365, 452, 478 |
| Hpy99I | CGWCG | 1 cut(s) | 162 |
| HpyAV | CCTTC | 1 cut(s) | 124 |
| HpyCH4V | TGCA | 2 cut(s) | 237, 430 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 337, 377 |
| HpyF3I | CTNAG | 1 cut(s) | 78 |
| Hsp92II | CATG | 6 cut(s) | 268, 358, 377, 410, 437, 471 |
| Kzo9I | GATC | 3 cut(s) | 218, 361, 448 |
| LmnI | GCTCC | 4 cut(s) | 142, 162, 263, 290 |
| LpnPI | CCDG | 8 cut(s) | 32, 108, 160, 174, 284, 378, 395, 465 |
| LweI | GCATC | 1 cut(s) | 37 |
| MaeI | CTAG | 2 cut(s) | 122, 315 |
| MaeIII | GTNAC | 2 cut(s) | 196, 400 |
| MalI | GATC | 3 cut(s) | 220, 363, 450 |
| MboI | GATC | 3 cut(s) | 218, 361, 448 |
| MboII | GAAGA | 3 cut(s) | 91, 195, 507 |
| MflI | RGATCY | 1 cut(s) | 361 |
| MhlI | GDGCHC | 2 cut(s) | 84, 382 |
| MluCI | AATT | 2 cut(s) | 150, 184 |
| MlyI | GAGTC | 1 cut(s) | 446 |
| MmeI | TCCRAC | 2 cut(s) | 140, 164 |
| MnlI | CCTC | 3 cut(s) | 129, 271, 474 |
| MseI | TTAA | 3 cut(s) | 308, 414, 500 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 337, 377 |
| NcoI | CCATGG | 1 cut(s) | 467 |
| NdeII | GATC | 3 cut(s) | 218, 361, 448 |
| NlaIII | CATG | 6 cut(s) | 268, 358, 377, 410, 437, 471 |
| NlaIV | GGNNCC | 2 cut(s) | 363, 379 |
| NmuCI | GTSAC | 1 cut(s) | 196 |
| NspI | RCATGY | 1 cut(s) | 358 |
| PciI | ACATGT | 1 cut(s) | 354 |
| PfeI | GAWTC | 2 cut(s) | 18, 62 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 357 |
| PkrI | GCNGC | 1 cut(s) | 398 |
| PleI | GAGTC | 1 cut(s) | 445 |
| PpsI | GAGTC | 1 cut(s) | 445 |
| PscI | ACATGT | 1 cut(s) | 354 |
| PspFI | CCCAGC | 1 cut(s) | 46 |
| PspN4I | GGNNCC | 2 cut(s) | 363, 379 |
| PspPI | GGNCC | 2 cut(s) | 444, 550 |
| PsuI | RGATCY | 1 cut(s) | 361 |
| SaqAI | TTAA | 3 cut(s) | 308, 414, 500 |
| SatI | GCNGC | 1 cut(s) | 397 |
| Sau3AI | GATC | 3 cut(s) | 218, 361, 448 |
| Sau96I | GGNCC | 2 cut(s) | 444, 550 |
| SchI | GAGTC | 1 cut(s) | 446 |
| SduI | GDGCHC | 2 cut(s) | 84, 382 |
| SetI | ASST | 8 cut(s) | 48, 116, 260, 295, 316, 327, 333, 489 |
| SfaNI | GCATC | 1 cut(s) | 37 |
| SmlI | CTYRAG | 1 cut(s) | 326 |
| SmoI | CTYRAG | 1 cut(s) | 326 |
| Sse9I | AATT | 2 cut(s) | 150, 184 |
| SsiI | CCGC | 1 cut(s) | 396 |
| SspMI | CTAG | 2 cut(s) | 122, 315 |
| StyI | CCWWGG | 1 cut(s) | 467 |
| TaqI | TCGA | 1 cut(s) | 388 |
| TasI | AATT | 2 cut(s) | 150, 184 |
| TauI | GCSGC | 1 cut(s) | 399 |
| TfiI | GAWTC | 2 cut(s) | 18, 62 |
| Tru1I | TTAA | 3 cut(s) | 308, 414, 500 |
| Tru9I | TTAA | 3 cut(s) | 308, 414, 500 |
| TscAI | CASTG | 2 cut(s) | 239, 540 |
| TseFI | GTSAC | 1 cut(s) | 196 |
| Tsp45I | GTSAC | 1 cut(s) | 196 |
| TspDTI | ATGAA | 1 cut(s) | 54 |
| TspGWI | ACGGA | 1 cut(s) | 120 |
| TspRI | CASTG | 2 cut(s) | 239, 540 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 357 |
| XapI | RAATTY | 2 cut(s) | 150, 184 |
| XbaI | TCTAGA | 1 cut(s) | 121 |
| XceI | RCATGY | 1 cut(s) | 358 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 413 |
| XspI | CTAG | 2 cut(s) | 122, 315 |