RLG00000001764

Zinc knuckle

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000073
Physical Location & Seq
Forward (+)
20346063 .. 20347714
1652 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001764

Sequence Viewer

Length: 1575 bp
ATGCTAGAGGCAGTTGCTGGAACTGTCCTAAACGTCGAAAATCCTAACACTATCAATGGTTGGAGGGGTTTCGTCCGGGTCCGGGTCAATATCAATACCCAAATTTCCCTGGTCCCGGGTGTGTGGATTAGCTGTGGTTCCAACCCCCCGATTTTGGTGGAGTTCAGATATGAAAGAATATCTCTTTTCTGCTATAACTGTGGCCGTCTCAGTCATAGTGATCGCTTCTGCAATCAACCTCCATCCCCAAGAGCTGATCGTTTGGGAGTATGGATGATAACCCCCACTGCTAGATGCCTGGCGTCGGGTCCCCATTCTGTTGGGGATCGAGGATGGGATTGTTTCCAAAGTCAATGCTTCCATGCCCGACAAAATAGTCATCAGTATCTAGCCTCTTACATGACATCCCAACCCCTGCTTCAAGCTCCACTTCAGACGAACATCAGCAATAGGTCACAAAGCCGAGCAACTCTGGTGATCTCTGAAAAATCTCCGTCACCAGCAAGGGAGCCCCCCATCTCCCGACCACACCCTACCTTTTGTGTCGCCTCCTCCTCTGTTGGAACTAGGGATAAAGGTAAGGCCAAAATAGTTCAGCATGATGAGTTGGTTATTGCAGCTGTCAATGAGGATAGCAGAAGCTTGTTTATTGGATCGGGCCCAAATCTTTTCCCCACTTTGGGCCTTTCTGGTGAACTAAACTTGGGTCATACCCAGTTCGTCTTTGACAGCTCGATCAATGAGTTTGTCCCACTCCCCCCACCATCGAATCATTACCCACTCAACTACCCCCTCAATCAAGCCTTTAATCCTCTCCATCACCTTTTTGAACAAGAGCACACAACTCCCCTTGCACACTTCCAAGCTCAAACCAATGATTCTCTGGAAGCTTTAGTGGCTTCAAACATAAAACCAAACCCACTCCGCCTCAAGCGTCTAGCTGATGACCCCCCCCCCCCCAACGAATCAGACCGAAAATGCAAAAGATCAAAGTTCAAAGCCGTTCCTTCTTTCGATACGGGCTTATCTCTGGCTCATTCTACTAATTTGCATCTCCTCAATTTGCCTAATGATGGACATCCTCTTCCGGGGAGGAGAGCCCGAGGATCCAACACAAATGGAAAGATACGTGATCGAGCCAGAATTCGGGGCACCCGCGGATGTGGCCACGGAGGTCATCGAATGGCAATTTCTGATACTCCCACACCTCAAGTTCAAAGAGATGCTTTTCTCAGAGAGACCCTTACAACCACTGAGGGGTTATTTGCGGTACAACTCATTCTAGCAGAGAACTCTCACTCCATTCTCCCTCCTCTGGACCTTAACGTCACTAGCTATCAGCCAATGAGTCACATTCCACCTTCTCCAATCTCTGTTCTAGAAGGGCACCCTCAACTCCTAGCACGGGACCAGTCACACACCTCTTCAGGAATCTTTTCTGAAAATGCTAGGCATTCCCCTCCTTTGCTAGCTTTGGAACTTGCAACCACATCTGATCCAAATCCTCCAAATGATCATCCCCCTCCAGATCAGGGCACCGGTGGCTGGCCTGATGCAGCCACGGGCCCAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

525

Amino Acids

57.36

Weight (kDa)

8.33

Isoelectric Point (pI)

43.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 46 - 78 5.3e-11 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 375, 1325
AccB1I GGYRCC 3 cut(s) 1151, 1386, 1535
AccII CGCG 1 cut(s) 1158
AciI CCGC 4 cut(s) 925, 1156, 1158, 1268
AclWI GGATC 5 cut(s) 333, 661, 1101, 1114, 1490
AcoI YGGCCR 2 cut(s) 202, 1165
AcsI RAATTY 2 cut(s) 102, 1143
AcuI CTGAAG 2 cut(s) 416, 1410
AcyI GRCGYC 1 cut(s) 302
AfaI GTAC 1 cut(s) 1272
AgeI ACCGGT 1 cut(s) 1538
AgsI TTSAA 5 cut(s) 422, 830, 903, 997, 1217
AjnI CCWGG 2 cut(s) 108, 297
AjuI GAANNNNNNNTTGG 2 cut(s) 402, 434
AloI GAACNNNNNNTCC 2 cut(s) 1283, 1315
Alw21I GWGCWC 1 cut(s) 840
Alw26I GTCTC 2 cut(s) 212, 1232
AlwI GGATC 5 cut(s) 333, 661, 1101, 1114, 1490
AlwNI CAGNNNCTG 1 cut(s) 17
Ama87I CYCGRG 2 cut(s) 115, 1101
AoxI GGCC 7 cut(s) 202, 582, 658, 682, 1165, 1547, 1564
ApaI GGGCCC 2 cut(s) 662, 1568
ApeKI GCWGC 2 cut(s) 617, 1556
ApoI RAATTY 2 cut(s) 102, 1143
AsiGI ACCGGT 1 cut(s) 1538
Asp700I GAANNNNTTC 1 cut(s) 1435
AsuC2I CCSGG 5 cut(s) 77, 83, 116, 117, 1089
AsuHPI GGTGA 4 cut(s) 487, 489, 704, 812
AsuNHI GCTAGC 1 cut(s) 1468
AvaI CYCGRG 2 cut(s) 115, 1101
AvaII GGWCC 5 cut(s) 79, 112, 308, 1318, 1408
BaeGI GKGCMC 5 cut(s) 662, 1154, 1389, 1538, 1568
BalI TGGCCA 1 cut(s) 1167
BamHI GGATCC 1 cut(s) 1106
BanI GGYRCC 3 cut(s) 1151, 1386, 1535
BanII GRGCYC 4 cut(s) 513, 662, 1102, 1568
Bbv12I GWGCWC 1 cut(s) 840
BbvI GCAGC 2 cut(s) 629, 1568
BccI CCATC 6 cut(s) 250, 327, 524, 772, 825, 1067
BceAI ACGGC 2 cut(s) 189, 986
BciT130I CCWGG 2 cut(s) 110, 299
BclI TGATCA 1 cut(s) 1513
BcnI CCSGG 5 cut(s) 77, 83, 116, 117, 1089
BcoDI GTCTC 2 cut(s) 212, 1232
BisI GCNGC 2 cut(s) 618, 1557
BlsI GCNGC 2 cut(s) 619, 1558
Bme1390I CCNGG 7 cut(s) 77, 83, 110, 116, 117, 299, 1089
Bme18I GGWCC 5 cut(s) 79, 112, 308, 1318, 1408
BmeT110I CYCGRG 2 cut(s) 115, 1101
BmrFI CCNGG 7 cut(s) 77, 83, 110, 116, 117, 299, 1089
BmrI ACTGGG 1 cut(s) 709
BmsI GCATC 4 cut(s) 284, 1060, 1213, 1543
BmtI GCTAGC 1 cut(s) 1472
BmuI ACTGGG 1 cut(s) 709
BpmI CTGGAG 1 cut(s) 1509
BpuEI CTTGAG 2 cut(s) 914, 1194
BpuMI CCSGG 5 cut(s) 77, 83, 116, 117, 1089
BsaAI YACGTR 1 cut(s) 1130
BsaBI GATNNNNATC 2 cut(s) 1077, 1500
BsaHI GRCGYC 1 cut(s) 302
BsaI GGTCTC 1 cut(s) 1232
BsaJI CCNNGG 7 cut(s) 108, 115, 1088, 1102, 1156, 1168, 1560
BsaWI WCCGGW 1 cut(s) 1538
BsaXI ACNNNNNCTCC 2 cut(s) 1283, 1313
Bse118I RCCGGY 1 cut(s) 1538
Bse1I ACTGG 2 cut(s) 715, 1411
Bse8I GATNNNNATC 2 cut(s) 1077, 1500
BseBI CCWGG 2 cut(s) 110, 299
BseDI CCNNGG 7 cut(s) 108, 115, 1088, 1102, 1156, 1168, 1560
BseGI GGATG 7 cut(s) 242, 279, 338, 404, 1078, 1166, 1516
BseJI GATNNNNATC 2 cut(s) 1077, 1500
BseMII CTCAG 3 cut(s) 223, 1245, 1246
BseNI ACTGG 2 cut(s) 715, 1411
BseRI GAGGAG 5 cut(s) 541, 544, 1046, 1108, 1302
BseSI GKGCMC 5 cut(s) 662, 1154, 1389, 1538, 1568
BseXI GCAGC 2 cut(s) 629, 1568
Bsh1236I CGCG 1 cut(s) 1158
BshFI GGCC 7 cut(s) 204, 584, 660, 684, 1167, 1549, 1566
BshNI GGYRCC 3 cut(s) 1151, 1386, 1535
BshTI ACCGGT 1 cut(s) 1538
BsiHKAI GWGCWC 1 cut(s) 840
BsiHKCI CYCGRG 2 cut(s) 115, 1101
BsiSI CCGG 5 cut(s) 76, 82, 116, 1088, 1539
BslFI GGGAC 4 cut(s) 98, 294, 734, 1421
BsmAI GTCTC 2 cut(s) 212, 1232
BsmBI CGTCTC 1 cut(s) 212
BsmFI GGGAC 4 cut(s) 98, 294, 734, 1421
BsmI GAATGC 1 cut(s) 1453
BsnI GGCC 7 cut(s) 204, 584, 660, 684, 1167, 1549, 1566
Bso31I GGTCTC 1 cut(s) 1232
BsoBI CYCGRG 2 cut(s) 115, 1101
Bsp120I GGGCCC 2 cut(s) 658, 1564
Bsp1286I GDGCHC 8 cut(s) 513, 662, 840, 1102, 1154, 1389, 1538, 1568
BspACI CCGC 4 cut(s) 925, 1156, 1158, 1268
BspANI GGCC 7 cut(s) 204, 584, 660, 684, 1167, 1549, 1566
BspCNI CTCAG 3 cut(s) 222, 1245, 1246
BspFNI CGCG 1 cut(s) 1158
BspOI GCTAGC 1 cut(s) 1472
BspPI GGATC 5 cut(s) 333, 661, 1101, 1114, 1490
BspT107I GGYRCC 3 cut(s) 1151, 1386, 1535
BspTNI GGTCTC 1 cut(s) 1232
BsrFI RCCGGY 1 cut(s) 1538
BsrI ACTGG 2 cut(s) 715, 1411
BssAI RCCGGY 1 cut(s) 1538
BssECI CCNNGG 7 cut(s) 108, 115, 1088, 1102, 1156, 1168, 1560
BssNI GRCGYC 1 cut(s) 302
Bst2UI CCWGG 2 cut(s) 110, 299
Bst4CI ACNGT 2 cut(s) 25, 200
Bst6I CTCTTC 2 cut(s) 1089, 1429
BstACI GRCGYC 1 cut(s) 302
BstBAI YACGTR 1 cut(s) 1130
BstC8I GCNNGC 2 cut(s) 1470, 1547
BstDEI CTNAG 3 cut(s) 209, 1232, 1254
BstDSI CCRYGG 3 cut(s) 1156, 1168, 1560
BstF5I GGATG 7 cut(s) 242, 279, 338, 404, 1078, 1166, 1516
BstFNI CGCG 1 cut(s) 1158
BstMAI GTCTC 2 cut(s) 212, 1232
BstMWI GCNNNNNNNGC 3 cut(s) 896, 1164, 1542
BstNI CCWGG 2 cut(s) 110, 299
BstSCI CCNGG 7 cut(s) 75, 81, 108, 114, 115, 297, 1087
BstSLI GKGCMC 5 cut(s) 662, 1154, 1389, 1538, 1568
BstUI CGCG 1 cut(s) 1158
BstV1I GCAGC 2 cut(s) 629, 1568
BstX2I RGATCY 1 cut(s) 1106
BstXI CCANNNNNNTGG 1 cut(s) 320
BstYI RGATCY 1 cut(s) 1106
BsuRI GGCC 7 cut(s) 204, 584, 660, 684, 1167, 1549, 1566
BtgI CCRYGG 3 cut(s) 1156, 1168, 1560
BtsCI GGATG 7 cut(s) 242, 279, 338, 404, 1078, 1166, 1516
BtsI GCAGTG 1 cut(s) 285
BtsIMutI CAGTG 2 cut(s) 285, 1251
Cac8I GCNNGC 2 cut(s) 1470, 1547
CaiI CAGNNNCTG 1 cut(s) 17
Cfr10I RCCGGY 1 cut(s) 1538
Cfr42I CCGCGG 1 cut(s) 1159
Cfr9I CCCGGG 1 cut(s) 115
CseI GACGC 2 cut(s) 291, 923
Csp6I GTAC 1 cut(s) 1271
CspAI ACCGGT 1 cut(s) 1538
CviAII CATG 4 cut(s) 362, 400, 599, 1572
CviQI GTAC 1 cut(s) 1271
DdeI CTNAG 3 cut(s) 209, 1232, 1254
DrdI GACNNNNNNGTC 2 cut(s) 375, 1325
DseDI GACNNNNNNGTC 2 cut(s) 375, 1325
EaeI YGGCCR 2 cut(s) 202, 1165
Eam1104I CTCTTC 2 cut(s) 1089, 1429
EarI CTCTTC 2 cut(s) 1089, 1429
EciI GGCGGA 1 cut(s) 914
Eco24I GRGCYC 4 cut(s) 513, 662, 1102, 1568
Eco31I GGTCTC 1 cut(s) 1232
Eco47I GGWCC 5 cut(s) 79, 112, 308, 1318, 1408
Eco57I CTGAAG 2 cut(s) 416, 1410
Eco88I CYCGRG 2 cut(s) 115, 1101
EcoO109I RGGNCCY 1 cut(s) 308
EcoRI GAATTC 1 cut(s) 1143
EcoRII CCWGG 2 cut(s) 108, 297
EcoT38I GRGCYC 4 cut(s) 513, 662, 1102, 1568
Esp3I CGTCTC 1 cut(s) 212
FaeI CATG 4 cut(s) 365, 403, 602, 1575
FalI AAGNNNNNCTT 4 cut(s) 414, 446, 1210, 1242
FaqI GGGAC 4 cut(s) 98, 294, 734, 1421
FatI CATG 4 cut(s) 361, 399, 598, 1571
FauI CCCGC 1 cut(s) 1163
FbaI TGATCA 1 cut(s) 1513
Fnu4HI GCNGC 2 cut(s) 618, 1557
FokI GGATG 7 cut(s) 229, 286, 345, 391, 1065, 1173, 1503
FriOI GRGCYC 4 cut(s) 513, 662, 1102, 1568
Fsp4HI GCNGC 2 cut(s) 618, 1557
GluI GCNGC 2 cut(s) 618, 1557
GsuI CTGGAG 1 cut(s) 1509
HaeIII GGCC 7 cut(s) 204, 584, 660, 684, 1167, 1549, 1566
HapII CCGG 5 cut(s) 76, 82, 116, 1088, 1539
HgaI GACGC 2 cut(s) 291, 923
Hin1I GRCGYC 1 cut(s) 302
Hin1II CATG 4 cut(s) 365, 403, 602, 1575
HindIII AAGCTT 2 cut(s) 640, 888
HinfI GANTC 5 cut(s) 769, 878, 965, 1348, 1431
HpaII CCGG 5 cut(s) 76, 82, 116, 1088, 1539
HphI GGTGA 4 cut(s) 487, 489, 704, 812
Hpy166II GTNNAC 1 cut(s) 695
Hpy188I TCNGA 8 cut(s) 167, 435, 484, 970, 1195, 1235, 1441, 1495
Hpy188III TCNNGA 6 cut(s) 522, 884, 1316, 1379, 1428, 1526
Hpy8I GTNNAC 1 cut(s) 695
Hpy99I CGWCG 2 cut(s) 38, 307
HpyAV CCTTC 3 cut(s) 1017, 1371, 1376
HpyCH4III ACNGT 2 cut(s) 25, 200
HpyCH4IV ACGT 3 cut(s) 33, 1129, 1326
HpyCH4V TGCA 7 cut(s) 231, 617, 854, 981, 1051, 1484, 1556
HpyF10VI GCNNNNNNNGC 3 cut(s) 896, 1164, 1542
HpyF3I CTNAG 3 cut(s) 209, 1232, 1254
HpySE526I ACGT 3 cut(s) 33, 1129, 1326
Hsp92I GRCGYC 1 cut(s) 302
Hsp92II CATG 4 cut(s) 365, 403, 602, 1575
KflI GGGWCCC 1 cut(s) 308
Ksp22I TGATCA 1 cut(s) 1513
KspI CCGCGG 1 cut(s) 1159
LmnI GCTCC 2 cut(s) 430, 508
Lsp1109I GCAGC 2 cut(s) 629, 1568
LweI GCATC 4 cut(s) 284, 1060, 1213, 1543
MaeII ACGT 3 cut(s) 33, 1129, 1326
MaeIII GTNAC 5 cut(s) 453, 495, 1327, 1349, 1413
MboII GAAGA 2 cut(s) 1076, 1416
MflI RGATCY 1 cut(s) 1106
MhlI GDGCHC 8 cut(s) 513, 662, 840, 1102, 1154, 1389, 1538, 1568
MlsI TGGCCA 1 cut(s) 1167
MluCI AATT 5 cut(s) 102, 1045, 1060, 1143, 1188
MluNI TGGCCA 1 cut(s) 1167
MlyI GAGTC 1 cut(s) 1357
MmeI TCCRAC 4 cut(s) 41, 165, 541, 1134
Mox20I TGGCCA 1 cut(s) 1167
MroXI GAANNNNTTC 1 cut(s) 1435
MscI TGGCCA 1 cut(s) 1167
MseI TTAA 2 cut(s) 807, 1323
Msp20I TGGCCA 1 cut(s) 1167
MspA1I CMGCKG 2 cut(s) 620, 1158
MspI CCGG 5 cut(s) 76, 82, 116, 1088, 1539
MspR9I CCNGG 7 cut(s) 77, 83, 110, 116, 117, 299, 1089
Mva1269I GAATGC 1 cut(s) 1453
MvaI CCWGG 2 cut(s) 110, 299
MvnI CGCG 1 cut(s) 1158
MwoI GCNNNNNNNGC 3 cut(s) 896, 1164, 1542
NciI CCSGG 5 cut(s) 77, 83, 116, 117, 1089
NheI GCTAGC 1 cut(s) 1468
NlaIII CATG 4 cut(s) 365, 403, 602, 1575
NmeAIII GCCGAG 1 cut(s) 488
NmuCI GTSAC 5 cut(s) 453, 495, 1327, 1349, 1413
PctI GAATGC 1 cut(s) 1453
PdmI GAANNNNTTC 1 cut(s) 1435
PfeI GAWTC 4 cut(s) 769, 878, 965, 1431
PinAI ACCGGT 1 cut(s) 1538
PkrI GCNGC 2 cut(s) 619, 1558
PleI GAGTC 1 cut(s) 1356
PpsI GAGTC 1 cut(s) 1356
Ppu21I YACGTR 1 cut(s) 1130
PpuMI RGGWCCY 1 cut(s) 308
Psp5II RGGWCCY 1 cut(s) 308
Psp6I CCWGG 2 cut(s) 108, 297
PspGI CCWGG 2 cut(s) 108, 297
PspOMI GGGCCC 2 cut(s) 658, 1564
PspPPI RGGWCCY 1 cut(s) 308
PstNI CAGNNNCTG 1 cut(s) 17
PsuI RGATCY 1 cut(s) 1106
PvuII CAGCTG 1 cut(s) 620
RsaI GTAC 1 cut(s) 1272
RsaNI GTAC 1 cut(s) 1271
SacII CCGCGG 1 cut(s) 1159
SaqAI TTAA 2 cut(s) 807, 1323
SatI GCNGC 2 cut(s) 618, 1557
SchI GAGTC 1 cut(s) 1357
ScrFI CCNGG 7 cut(s) 77, 83, 110, 116, 117, 299, 1089
SduI GDGCHC 8 cut(s) 513, 662, 840, 1102, 1154, 1389, 1538, 1568
SfaNI GCATC 4 cut(s) 284, 1060, 1213, 1543
Sfr303I CCGCGG 1 cut(s) 1159
SgrAI CRCCGGYG 1 cut(s) 1538
SgrBI CCGCGG 1 cut(s) 1159
SinI GGWCC 5 cut(s) 79, 112, 308, 1318, 1408
SmaI CCCGGG 1 cut(s) 117
SmlI CTYRAG 2 cut(s) 929, 1209
SmoI CTYRAG 2 cut(s) 929, 1209
Sse9I AATT 5 cut(s) 102, 1045, 1060, 1143, 1188
SsiI CCGC 4 cut(s) 925, 1156, 1158, 1268
StyD4I CCNGG 7 cut(s) 75, 81, 108, 114, 115, 297, 1087
TaaI ACNGT 2 cut(s) 25, 200
TaiI ACGT 3 cut(s) 36, 1132, 1329
TaqI TCGA 7 cut(s) 36, 328, 734, 767, 1014, 1135, 1180
TaqII GACCGA 1 cut(s) 987
TasI AATT 5 cut(s) 102, 1045, 1060, 1143, 1188
TfiI GAWTC 4 cut(s) 769, 878, 965, 1431
Tru1I TTAA 2 cut(s) 807, 1323
Tru9I TTAA 2 cut(s) 807, 1323
TscAI CASTG 2 cut(s) 292, 1258
TseFI GTSAC 5 cut(s) 453, 495, 1327, 1349, 1413
TseI GCWGC 2 cut(s) 617, 1556
Tsp45I GTSAC 5 cut(s) 453, 495, 1327, 1349, 1413
TspDTI ATGAA 1 cut(s) 186
TspGWI ACGGA 2 cut(s) 483, 1185
TspMI CCCGGG 1 cut(s) 115
TspRI CASTG 2 cut(s) 292, 1258
VpaK11BI GGWCC 5 cut(s) 79, 112, 308, 1318, 1408
XapI RAATTY 2 cut(s) 102, 1143
XbaI TCTAGA 1 cut(s) 1378
XcmI CCANNNNNNNNNTGG 1 cut(s) 880
XmaI CCCGGG 1 cut(s) 115
XmnI GAANNNNTTC 1 cut(s) 1435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.