Rmu_sc0007121.1_g000014

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007121.1
OG0000073
Physical Location & Seq
Reverse (-)
36532 .. 39342
2811 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007121.1_g000014.1.cds

Sequence Viewer

Length: 2073 bp
atgtcatctcatgatcaccttgcttcccgtttggaaaacacctgttgtctagatgaggttgagaacggtgtctctctccttggagcaatcattgcagatgttgtaccaaacattggtggcatcaagggatccctcagaacctcctggagggacctgggtacaattaagattgcccatctgcaccacaacatcttccccataaaggccccccctcatgctgcctctactcttctggaaggtggtccctggcatgtagacaacatgaggttcaacgtggttaaatggctcccgaacctcaccataagagcaagttcacccgttggtgttctgggtcaccatggtgacctgcacagtatctccggtctcacaagggagaagatgaataccaagaacgctgcattaataggctctgaaattggtactgttcttgaaattgaagaccttgaagtggtggatgctaccctccgtggctacttgagagtcaaggtcctcatggactccaggaacccgtttcccactggattctggttcccactaaacgagtacacaaacactaggggtggtaaacccagaagcaggagaaccagagaatatctggtactgaccttggatgaagaggcgttccattcccatcaggcaacagtcttggctagaccggccggcaagggtccactggcggaaaccgaaaagcaagagagtcacgggcccatatcatacccggtctcagcccatcacccacaaagacacccgggacccctccttatttctgagcatgtgactagtcatgatgtaaccacgggtaggcacgtggttaatgatttgactcgggaacaatctaaggggaaatgcccaatccattccacaataacccagaatgtttccacctctgttgctctgctaccccaacctcaaacacaaaaactgacctttaactccccagcccctctaccaacctcaactaagagacgccactcccaaaccgacccatctacaagccctcgacatgccaaaaccagactcatatcccaacagcctcacaaccttactcaagatggagggggtgacacctttctcccaattcccatcccatactcagctactcaatctaggggtagaggtcgccccagaggaaggggtagaggaagaagaggaggaggacctgaatcatactccccagggacaagttcgggcagaagtggaagcaggtttggaacaagaaagcgttcctttgggacttacccaagcattgatctcaaccttggagctgtccaggagatccgagttgaaattctagaggattcttccgaaatcagtgctaatattcaagatgattctcaggatctggaggaaaagttaggggagctcatccgctcccactccccgtccctggttttcctttgtgagaccaaacaaccaagcttcagaatcaacaaacttcgacgccaactcaaattctataaaggtaccaccatagatccatctcctaattctgcaggaggattggctctgtggtggcgccctgaggtggaggttgaggtactgtttaaagataagaacattattgatacttttgttaatttcaccaatttgaactctcgggtgagaattacatggttttatggccctccttaccaggatgagaaatatagtttttggtcatctctatcctttctatcaaatccactggatattccctggatttgccttggtgatttcaatgaaatgatctctattgacgagaaagagggaggagttccctggcattggaatcgacccaggtacttgaaaagctttatggatcaaaatgctctttttgacttgaaattcaggggacccaaattcacttggcagaataagagagaagactccaatgaagttgtccgtgaaaggctagacagagctattggaaacaatgtatgggtaagcacatggactgactccatcgtccaccatgagccaagaatcggatcggatcactgtccattggtgctgtatactcatcctcgagttaaaaaaggccctaaactcttccgtttcgaagcaacctgggcggatgacccggagtgtgagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

690

Amino Acids

77.5

Weight (kDa)

8.95

Isoelectric Point (pI)

48.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1943
Acc36I ACCTGC 2 cut(s) 354, 1194
Acc65I GGTACC 1 cut(s) 1463
AccB1I GGYRCC 2 cut(s) 1463, 1515
AccB7I CCANNNNNTGG 1 cut(s) 113
AccBSI CCGCTC 1 cut(s) 1371
AccI GTMKAC 2 cut(s) 255, 1994
AciI CCGC 3 cut(s) 677, 1369, 2051
AclWI GGATC 8 cut(s) 123, 136, 1270, 1347, 1469, 1806, 1975, 1980
AcoI YGGCCR 1 cut(s) 657
AcsI RAATTY 4 cut(s) 1287, 1451, 1823, 1838
AcuI CTGAAG 1 cut(s) 1405
AcvI CACGTG 1 cut(s) 808
AcyI GRCGYC 3 cut(s) 967, 1441, 1516
AfaI GTAC 8 cut(s) 105, 160, 421, 545, 600, 1465, 1539, 1781
AhlI ACTAGT 1 cut(s) 779
AleI CACNNNNGTG 1 cut(s) 339
AluBI AGCT 6 cut(s) 1097, 1265, 1363, 1419, 1791, 1901
AluI AGCT 6 cut(s) 1097, 1265, 1363, 1419, 1791, 1901
Alw21I GWGCWC 1 cut(s) 1365
Alw26I GTCTC 5 cut(s) 76, 368, 727, 958, 1397
AlwI GGATC 8 cut(s) 123, 136, 1270, 1347, 1469, 1806, 1975, 1980
AlwNI CAGNNNCTG 1 cut(s) 1342
Ama87I CYCGRG 4 cut(s) 748, 825, 1596, 2004
AoxI GGCC 5 cut(s) 204, 657, 704, 1621, 2017
ApaI GGGCCC 1 cut(s) 708
ApeKI GCWGC 2 cut(s) 218, 395
ApoI RAATTY 4 cut(s) 1287, 1451, 1823, 1838
AseI ATTAAT 1 cut(s) 401
Asp700I GAANNNNTTC 1 cut(s) 1222
Asp718I GGTACC 1 cut(s) 1463
AspLEI GCGC 1 cut(s) 1518
AsuC2I CCSGG 4 cut(s) 719, 749, 750, 2060
AsuII TTCGAA 1 cut(s) 2037
AvaI CYCGRG 4 cut(s) 748, 825, 1596, 2004
AvaII GGWCC 7 cut(s) 151, 242, 487, 668, 752, 1157, 1832
AxyI CCTNAGG 1 cut(s) 1521
BaeGI GKGCMC 1 cut(s) 708
BaeI ACNNNNGTAYC 2 cut(s) 1557, 1590
BamHI GGATCC 1 cut(s) 128
BanI GGYRCC 2 cut(s) 1463, 1515
BanII GRGCYC 2 cut(s) 708, 1365
BbrPI CACGTG 1 cut(s) 808
BbsI GAAGAC 2 cut(s) 444, 1869
Bbv12I GWGCWC 1 cut(s) 1365
BbvI GCAGC 2 cut(s) 205, 382
BccI CCATC 8 cut(s) 183, 639, 738, 994, 1046, 1091, 1486, 1949
BcgI CGANNNNNNTGC 4 cut(s) 1295, 1329, 1751, 1785
BclI TGATCA 1 cut(s) 13
BcnI CCSGG 4 cut(s) 719, 749, 750, 2060
BcoDI GTCTC 5 cut(s) 76, 368, 727, 958, 1397
BcuI ACTAGT 1 cut(s) 779
BfaI CTAG 7 cut(s) 50, 555, 651, 780, 1107, 1292, 1892
BfmI CTRYAG 1 cut(s) 1491
BfoI RGCGCY 1 cut(s) 1519
BfuAI ACCTGC 2 cut(s) 354, 1194
BisI GCNGC 2 cut(s) 219, 396
BlsI GCNGC 2 cut(s) 220, 397
Bme18I GGWCC 7 cut(s) 151, 242, 487, 668, 752, 1157, 1832
BmeT110I CYCGRG 4 cut(s) 748, 825, 1596, 2004
BmsI GCATC 2 cut(s) 129, 445
BpiI GAAGAC 2 cut(s) 444, 1869
BpmI CTGGAG 3 cut(s) 166, 484, 1364
Bpu14I TTCGAA 1 cut(s) 2037
BpuEI CTTGAG 2 cut(s) 496, 1032
BpuMI CCSGG 4 cut(s) 719, 749, 750, 2060
BsaAI YACGTR 1 cut(s) 808
BsaHI GRCGYC 3 cut(s) 967, 1441, 1516
BsaI GGTCTC 3 cut(s) 368, 727, 1397
BsaWI WCCGGW 1 cut(s) 359
BsaXI ACNNNNNCTCC 5 cut(s) 341, 371, 1337, 1367, 2054
Bse118I RCCGGY 2 cut(s) 655, 659
Bse1I ACTGG 3 cut(s) 523, 678, 1689
Bse21I CCTNAGG 1 cut(s) 1521
Bse3DI GCAATG 1 cut(s) 90
BseGI GGATG 7 cut(s) 460, 616, 1083, 1365, 1642, 1999, 2059
BseMI GCAATG 1 cut(s) 90
BseMII CTCAG 6 cut(s) 148, 738, 759, 1107, 1349, 1512
BseNI ACTGG 3 cut(s) 523, 678, 1689
BseRI GAGGAG 3 cut(s) 1164, 1167, 1764
BseSI GKGCMC 1 cut(s) 708
BseX3I CGGCCG 1 cut(s) 657
BseXI GCAGC 2 cut(s) 205, 382
BseYI CCCAGC 1 cut(s) 937
BsgI GTGCAG 2 cut(s) 164, 332
Bsh1285I CGRYCG 1 cut(s) 660
BshFI GGCC 5 cut(s) 206, 659, 706, 1623, 2019
BshNI GGYRCC 2 cut(s) 1463, 1515
BsiEI CGRYCG 1 cut(s) 660
BsiHKAI GWGCWC 1 cut(s) 1365
BsiHKCI CYCGRG 4 cut(s) 748, 825, 1596, 2004
BsiSI CCGG 6 cut(s) 360, 656, 660, 719, 749, 2060
BslFI GGGAC 7 cut(s) 164, 228, 765, 1192, 1246, 1369, 1845
BsmAI GTCTC 5 cut(s) 76, 368, 727, 958, 1397
BsmBI CGTCTC 1 cut(s) 958
BsmFI GGGAC 7 cut(s) 164, 228, 765, 1192, 1246, 1369, 1845
BsnI GGCC 5 cut(s) 206, 659, 706, 1623, 2019
Bso31I GGTCTC 3 cut(s) 368, 727, 1397
BsoBI CYCGRG 4 cut(s) 748, 825, 1596, 2004
Bsp119I TTCGAA 1 cut(s) 2037
Bsp120I GGGCCC 1 cut(s) 704
Bsp1286I GDGCHC 2 cut(s) 708, 1365
Bsp19I CCATGG 1 cut(s) 337
BspACI CCGC 3 cut(s) 677, 1369, 2051
BspANI GGCC 5 cut(s) 206, 659, 706, 1623, 2019
BspCNI CTCAG 6 cut(s) 147, 737, 760, 1106, 1348, 1513
BspHI TCATGA 2 cut(s) 10, 784
BspMAI CTGCAG 1 cut(s) 1495
BspMI ACCTGC 2 cut(s) 354, 1194
BspPI GGATC 8 cut(s) 123, 136, 1270, 1347, 1469, 1806, 1975, 1980
BspT104I TTCGAA 1 cut(s) 2037
BspT107I GGYRCC 2 cut(s) 1463, 1515
BspTNI GGTCTC 3 cut(s) 368, 727, 1397
BsrBI CCGCTC 1 cut(s) 1371
BsrDI GCAATG 1 cut(s) 90
BsrFI RCCGGY 2 cut(s) 655, 659
BsrI ACTGG 3 cut(s) 523, 678, 1689
BssAI RCCGGY 2 cut(s) 655, 659
BssNAI GTATAC 1 cut(s) 1995
BssNI GRCGYC 3 cut(s) 967, 1441, 1516
BssT1I CCWWGG 5 cut(s) 79, 337, 606, 1258, 1705
Bst1107I GTATAC 1 cut(s) 1995
Bst4CI ACNGT 6 cut(s) 68, 353, 424, 643, 1542, 1979
Bst6I CTCTTC 4 cut(s) 234, 609, 1141, 2033
BstACI GRCGYC 3 cut(s) 967, 1441, 1516
BstAPI GCANNNNNTGC 1 cut(s) 92
BstBAI YACGTR 1 cut(s) 808
BstBI TTCGAA 1 cut(s) 2037
BstC8I GCNNGC 1 cut(s) 661
BstDEI CTNAG 8 cut(s) 134, 724, 768, 837, 960, 1093, 1335, 1521
BstDSI CCRYGG 3 cut(s) 337, 466, 795
BstEII GGTNACC 2 cut(s) 332, 341
BstENI CCTNNNNNAGG 1 cut(s) 145
BstF5I GGATG 7 cut(s) 460, 616, 1083, 1365, 1642, 1999, 2059
BstH2I RGCGCY 1 cut(s) 1519
BstHHI GCGC 1 cut(s) 1518
BstMAI GTCTC 5 cut(s) 76, 368, 727, 958, 1397
BstMCI CGRYCG 1 cut(s) 660
BstMWI GCNNNNNNNGC 3 cut(s) 92, 656, 2048
BstNSI RCATGY 3 cut(s) 254, 776, 1007
BstPI GGTNACC 2 cut(s) 332, 341
BstSFI CTRYAG 1 cut(s) 1491
BstSLI GKGCMC 1 cut(s) 708
BstV1I GCAGC 2 cut(s) 205, 382
BstV2I GAAGAC 2 cut(s) 444, 1869
BstX2I RGATCY 4 cut(s) 128, 1275, 1339, 1474
BstYI RGATCY 4 cut(s) 128, 1275, 1339, 1474
BstZ17I GTATAC 1 cut(s) 1995
BstZI CGGCCG 1 cut(s) 657
Bsu36I CCTNAGG 1 cut(s) 1521
BsuRI GGCC 5 cut(s) 206, 659, 706, 1623, 2019
BtgI CCRYGG 3 cut(s) 337, 466, 795
BtsCI GGATG 7 cut(s) 460, 616, 1083, 1365, 1642, 1999, 2059
BtsIMutI CAGTG 5 cut(s) 516, 671, 1318, 1682, 1975
BveI ACCTGC 2 cut(s) 354, 1194
Cac8I GCNNGC 1 cut(s) 661
CaiI CAGNNNCTG 1 cut(s) 1342
CciI TCATGA 2 cut(s) 10, 784
CfoI GCGC 1 cut(s) 1518
Cfr10I RCCGGY 2 cut(s) 655, 659
Cfr9I CCCGGG 1 cut(s) 748
CseI GACGC 2 cut(s) 975, 1449
Csp6I GTAC 8 cut(s) 104, 159, 420, 544, 599, 1464, 1538, 1780
CspCI CAANNNNNGTGG 2 cut(s) 871, 906
CviQI GTAC 8 cut(s) 104, 159, 420, 544, 599, 1464, 1538, 1780
DdeI CTNAG 8 cut(s) 134, 724, 768, 837, 960, 1093, 1335, 1521
DinI GGCGCC 1 cut(s) 1517
DraI TTTAAA 1 cut(s) 1546
DrdI GACNNNNNNGTC 1 cut(s) 1943
DseDI GACNNNNNNGTC 1 cut(s) 1943
EaeI YGGCCR 1 cut(s) 657
EagI CGGCCG 1 cut(s) 657
Eam1104I CTCTTC 4 cut(s) 234, 609, 1141, 2033
EarI CTCTTC 4 cut(s) 234, 609, 1141, 2033
EciI GGCGGA 2 cut(s) 692, 2066
Ecl136II GAGCTC 1 cut(s) 1363
EclXI CGGCCG 1 cut(s) 657
Eco130I CCWWGG 5 cut(s) 79, 337, 606, 1258, 1705
Eco24I GRGCYC 2 cut(s) 708, 1365
Eco31I GGTCTC 3 cut(s) 368, 727, 1397
Eco47I GGWCC 7 cut(s) 151, 242, 487, 668, 752, 1157, 1832
Eco52I CGGCCG 1 cut(s) 657
Eco53kI GAGCTC 1 cut(s) 1363
Eco57I CTGAAG 1 cut(s) 1405
Eco72I CACGTG 1 cut(s) 808
Eco81I CCTNAGG 1 cut(s) 1521
Eco88I CYCGRG 4 cut(s) 748, 825, 1596, 2004
Eco91I GGTNACC 2 cut(s) 332, 341
EcoICRI GAGCTC 1 cut(s) 1363
EcoNI CCTNNNNNAGG 1 cut(s) 145
EcoO109I RGGNCCY 7 cut(s) 151, 205, 487, 752, 1157, 1832, 2018
EcoO65I GGTNACC 2 cut(s) 332, 341
EcoT14I CCWWGG 5 cut(s) 79, 337, 606, 1258, 1705
EcoT38I GRGCYC 2 cut(s) 708, 1365
EgeI GGCGCC 1 cut(s) 1517
EheI GGCGCC 1 cut(s) 1517
ErhI CCWWGG 5 cut(s) 79, 337, 606, 1258, 1705
Esp3I CGTCTC 1 cut(s) 958
FalI AAGNNNNNCTT 2 cut(s) 1211, 1243
FaqI GGGAC 7 cut(s) 164, 228, 765, 1192, 1246, 1369, 1845
FbaI TGATCA 1 cut(s) 13
FblI GTMKAC 2 cut(s) 255, 1994
Fnu4HI GCNGC 2 cut(s) 219, 396
FokI GGATG 7 cut(s) 467, 623, 1070, 1352, 1649, 1986, 2066
FriOI GRGCYC 2 cut(s) 708, 1365
Fsp4HI GCNGC 2 cut(s) 219, 396
FspBI CTAG 7 cut(s) 50, 555, 651, 780, 1107, 1292, 1892
GlaI GCGC 1 cut(s) 1517
GluI GCNGC 2 cut(s) 219, 396
GsaI CCCAGC 1 cut(s) 941
GsuI CTGGAG 3 cut(s) 166, 484, 1364
HaeII RGCGCY 1 cut(s) 1519
HaeIII GGCC 5 cut(s) 206, 659, 706, 1623, 2019
HapII CCGG 6 cut(s) 360, 656, 660, 719, 749, 2060
HgaI GACGC 2 cut(s) 975, 1449
HhaI GCGC 1 cut(s) 1518
Hin1I GRCGYC 3 cut(s) 967, 1441, 1516
Hin6I GCGC 1 cut(s) 1516
HinP1I GCGC 1 cut(s) 1516
HindIII AAGCTT 2 cut(s) 1417, 1789
HpaII CCGG 6 cut(s) 360, 656, 660, 719, 749, 2060
Hpy166II GTNNAC 7 cut(s) 256, 314, 546, 566, 671, 1948, 1995
Hpy188I TCNGA 8 cut(s) 137, 412, 769, 1280, 1306, 1424, 1967, 1972
Hpy8I GTNNAC 7 cut(s) 256, 314, 546, 566, 671, 1948, 1995
Hpy99I CGWCG 1 cut(s) 1443
HpyAV CCTTC 2 cut(s) 230, 1125
HpyCH4III ACNGT 6 cut(s) 68, 353, 424, 643, 1542, 1979
HpyCH4IV ACGT 2 cut(s) 273, 807
HpyCH4V TGCA 5 cut(s) 95, 181, 349, 398, 1493
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 656, 2048
HpyF3I CTNAG 8 cut(s) 134, 724, 768, 837, 960, 1093, 1335, 1521
HpySE526I ACGT 2 cut(s) 273, 807
Hsp92I GRCGYC 3 cut(s) 967, 1441, 1516
HspAI GCGC 1 cut(s) 1516
KasI GGCGCC 1 cut(s) 1515
KflI GGGWCCC 2 cut(s) 752, 1832
KpnI GGTACC 1 cut(s) 1467
KroI GCCGGC 1 cut(s) 659
KroNI GCCGGC 1 cut(s) 661
Ksp22I TGATCA 1 cut(s) 13
LmnI GCTCC 5 cut(s) 83, 291, 1262, 1360, 1376
Lsp1109I GCAGC 2 cut(s) 205, 382
LweI GCATC 2 cut(s) 129, 445
MaeI CTAG 7 cut(s) 50, 555, 651, 780, 1107, 1292, 1892
MaeII ACGT 2 cut(s) 273, 807
MaeIII GTNAC 6 cut(s) 332, 341, 698, 775, 790, 1061
MbiI CCGCTC 1 cut(s) 1371
MflI RGATCY 4 cut(s) 128, 1275, 1339, 1474
MhlI GDGCHC 2 cut(s) 708, 1365
Mly113I GGCGCC 1 cut(s) 1516
MlyI GAGTC 7 cut(s) 489, 491, 706, 817, 1011, 1859, 1931
MroNI GCCGGC 1 cut(s) 659
MroXI GAANNNNTTC 1 cut(s) 1222
MseI TTAA 8 cut(s) 165, 279, 401, 813, 930, 1545, 1575, 2010
MslI CAYNNNNRTG 1 cut(s) 339
MspI CCGG 6 cut(s) 360, 656, 660, 719, 749, 2060
MwoI GCNNNNNNNGC 3 cut(s) 92, 656, 2048
NaeI GCCGGC 1 cut(s) 661
NarI GGCGCC 1 cut(s) 1516
NciI CCSGG 4 cut(s) 719, 749, 750, 2060
NcoI CCATGG 1 cut(s) 337
NgoMIV GCCGGC 1 cut(s) 659
NmuCI GTSAC 5 cut(s) 332, 341, 698, 775, 1061
NspI RCATGY 3 cut(s) 254, 776, 1007
NspV TTCGAA 1 cut(s) 2037
OliI CACNNNNGTG 1 cut(s) 339
PaeR7I CTCGAG 1 cut(s) 2004
PagI TCATGA 2 cut(s) 10, 784
PasI CCCWGGG 1 cut(s) 1175
PdiI GCCGGC 1 cut(s) 661
PdmI GAANNNNTTC 1 cut(s) 1222
PfeI GAWTC 7 cut(s) 522, 1163, 1298, 1331, 1425, 1768, 1962
PflMI CCANNNNNTGG 1 cut(s) 113
PfoI TCCNGGA 3 cut(s) 143, 500, 1269
PkrI GCNGC 2 cut(s) 220, 397
PleI GAGTC 7 cut(s) 488, 491, 705, 817, 1011, 1859, 1931
PluTI GGCGCC 1 cut(s) 1519
PmaCI CACGTG 1 cut(s) 808
PmlI CACGTG 1 cut(s) 808
PpsI GAGTC 7 cut(s) 488, 491, 705, 817, 1011, 1859, 1931
Ppu21I YACGTR 1 cut(s) 808
PpuMI RGGWCCY 5 cut(s) 151, 487, 752, 1157, 1832
PshBI ATTAAT 1 cut(s) 401
Psp124BI GAGCTC 1 cut(s) 1365
Psp5II RGGWCCY 5 cut(s) 151, 487, 752, 1157, 1832
PspCI CACGTG 1 cut(s) 808
PspEI GGTNACC 2 cut(s) 332, 341
PspFI CCCAGC 1 cut(s) 937
PspOMI GGGCCC 1 cut(s) 704
PspPPI RGGWCCY 5 cut(s) 151, 487, 752, 1157, 1832
PspXI VCTCGAGB 1 cut(s) 2004
PstI CTGCAG 1 cut(s) 1495
PstNI CAGNNNCTG 1 cut(s) 1342
PsuI RGATCY 4 cut(s) 128, 1275, 1339, 1474
RsaI GTAC 8 cut(s) 105, 160, 421, 545, 600, 1465, 1539, 1781
RsaNI GTAC 8 cut(s) 104, 159, 420, 544, 599, 1464, 1538, 1780
RseI CAYNNNNRTG 1 cut(s) 339
SacI GAGCTC 1 cut(s) 1365
SaqAI TTAA 8 cut(s) 165, 279, 401, 813, 930, 1545, 1575, 2010
SatI GCNGC 2 cut(s) 219, 396
SchI GAGTC 7 cut(s) 489, 491, 706, 817, 1011, 1859, 1931
SduI GDGCHC 2 cut(s) 708, 1365
SfaNI GCATC 2 cut(s) 129, 445
SfcI CTRYAG 1 cut(s) 1491
SfoI GGCGCC 1 cut(s) 1517
Sfr274I CTCGAG 1 cut(s) 2004
SfuI TTCGAA 1 cut(s) 2037
SinI GGWCC 7 cut(s) 151, 242, 487, 668, 752, 1157, 1832
SlaI CTCGAG 1 cut(s) 2004
SmaI CCCGGG 1 cut(s) 750
SmiMI CAYNNNNRTG 1 cut(s) 339
SmlI CTYRAG 3 cut(s) 475, 1047, 2004
SmoI CTYRAG 3 cut(s) 475, 1047, 2004
SpeI ACTAGT 1 cut(s) 779
SsiI CCGC 3 cut(s) 677, 1369, 2051
SspDI GGCGCC 1 cut(s) 1515
SspI AATATT 1 cut(s) 1321
SspMI CTAG 7 cut(s) 50, 555, 651, 780, 1107, 1292, 1892
SstI GAGCTC 1 cut(s) 1365
StyI CCWWGG 5 cut(s) 79, 337, 606, 1258, 1705
TaaI ACNGT 6 cut(s) 68, 353, 424, 643, 1542, 1979
TaiI ACGT 2 cut(s) 276, 810
TaqI TCGA 5 cut(s) 1000, 1438, 1771, 2005, 2037
TatI WGTACW 1 cut(s) 543
TfiI GAWTC 7 cut(s) 522, 1163, 1298, 1331, 1425, 1768, 1962
Tru1I TTAA 8 cut(s) 165, 279, 401, 813, 930, 1545, 1575, 2010
Tru9I TTAA 8 cut(s) 165, 279, 401, 813, 930, 1545, 1575, 2010
TscAI CASTG 5 cut(s) 523, 678, 1318, 1689, 1982
TseFI GTSAC 5 cut(s) 332, 341, 698, 775, 1061
TseI GCWGC 2 cut(s) 218, 395
Tsp45I GTSAC 5 cut(s) 332, 341, 698, 775, 1061
TspDTI ATGAA 4 cut(s) 395, 627, 1734, 1887
TspGWI ACGGA 3 cut(s) 455, 1871, 2021
TspMI CCCGGG 1 cut(s) 748
TspRI CASTG 5 cut(s) 523, 678, 1318, 1689, 1982
Van91I CCANNNNNTGG 1 cut(s) 113
VpaK11BI GGWCC 7 cut(s) 151, 242, 487, 668, 752, 1157, 1832
VspI ATTAAT 1 cut(s) 401
XagI CCTNNNNNAGG 1 cut(s) 145
XapI RAATTY 4 cut(s) 1287, 1451, 1823, 1838
XbaI TCTAGA 2 cut(s) 49, 1291
XceI RCATGY 3 cut(s) 254, 776, 1007
XcmI CCANNNNNNNNNTGG 1 cut(s) 592
XhoI CTCGAG 1 cut(s) 2004
XmaI CCCGGG 1 cut(s) 748
XmiI GTMKAC 2 cut(s) 255, 1994
XmnI GAANNNNTTC 1 cut(s) 1222
XspI CTAG 7 cut(s) 50, 555, 651, 780, 1107, 1292, 1892
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.