RLG00000014178

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000073
Physical Location & Seq
Forward (+)
48709944 .. 48712063
2120 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014178

Sequence Viewer

Length: 1719 bp
ATGGCGTTTATAAAGCCTCCTCATGCAGGACGCTTCTATGCCAAGCGGTTTCATCACAATAGCCCTAACATGGTTACCTCACCACTCCACTCTTCTACCTCTGTTCTATCCCTTCCTTCTTCCTCGCCCACTACTACCTCAACTTCTATACCCCTGCATCCAGCCCTCCTTCCTGCTGAAGCGATCCCTGAGGGAGAACTCTTCATCCAACTCCCTCCCCCAGCCCCAGATCAGTTTCGAGATGTACACTTGGTGGGTGCAGTTATTTCAGATCGCACGCTTCATGCTCCGTCTTTGATTCGTAATCTTATCGCTGGTTGGACTGAAATTGGTCGGTTTCAGGTTGATTTGATAGGTGGTAAGTCTATATTTTCTATCATGGCCCCCTCGGAAGCTGCTGCGGATCAGTTACTTGAACAAGGTCCATGGTCGGTTATGGGTTCTACCATGTCTATCCACCCTTGGCCTTTATTGAGCAGACTTGAGGATATTCCATTGCATTTGGTTACTTTTTGGGTGCAGGTCCATGGCCTCCAATGTGGTCATCTGACAGATGAGGTTGCACACTTGCTTGGTGCTCAGATTGGGACTGTGTTGACAGTTGATGACCCTCAATCTCCTGTTAGAAATCCAAGGTATTTGCATATTCGAGTTCAGGTGGACTCTCGGGCCCCTCTGTCTCCAGGCTTCTGGTTTAATCATTCCCCTACTGAAGCAACTTGGGCTGAATTTCGTTATGAAAGGCTTTTAGATTTCTGTTATCGTTGTGGTAGGTTGGGTCATGTCATCAACACTTGTACTTTCCGTCGCCATCCTTCTGCAGAAAAGCTGGGCCCTTGGATGTCAGTTCCGACTCCTCCTCGTCTTCCTCCGGATAGTCAACAAAATTGGGATCGTTTCCCGCATCAGAGTTTTGAGAGTCGCCACAGTCGAACCCTAATTCTGGCTCATCCAAGGCAAGGCTTCTGGCGTCCACCTGCTTCATCTCCTGCCGCCACGTCATCAGGGGAGGGCCCCTCCAACACCAAATCTATCGGTAAGGGTAAGGCAAAGGTGGATGATTGGACTTCCACGTCACCATCAGTGTCACCATCTCTGTTGGTTTCCCCTAACATGGACGACATGCAGATGGCGATATCTCTATCCTTGGCTGATATGGCAGGGCCACCTTCTGGCCAACATGACTCCACTTTGGATACACTACCCATACAGCCCATTGCCTCTATCGGTTTGGACCACTTTCCTTTGTTGGGTCTTCACCATGACCCGGTGCGGAAGAGGTTACAGGAGGCTCTGCAGGAAAATACGAGGCAACTCAAGAGGCACAAGACTTTGATTCTGGATATTGATGTTCCCATGGTTCCAGTTCAAAGATCTCACATTGCATCTAAACCAAGGCGTGGTAGACCTCCTGGTACTTCGGCTACTAGAAAGTCTAAAGGAATTGGCCGCCGGGGTCGTCCTAAGAAGGTTCTTGTCTCCCAGCTCCCTCCCACTCATGAGGCTACACCTCAAGCATCAACTCCGGAGGGTACATCTTTTGCCTCAGTTTCTTCCTCTGCAATGAATCTTTCTGTTATGGATCAATCTCCTGCTTCCTCGGTTTCAATTGATCCAGATGATTGTTCAGTTGGTGATCCCATTCCGTCTTCTGCCCCTTCTGATGGTACGGGTAATGGCATTGGTAGCTGGCCAAGTGCAGCTACGGGTTCCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4 zf-RING_2

Protein Analysis

573

Amino Acids

62.12

Weight (kDa)

8.28

Isoelectric Point (pI)

53.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 84 - 156 1.5e-06 Domain of unknown function (DUF4283)
zf-CCHC_4 PF14392 236 - 267 1.1e-09 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 11
AarI CACCTGC 1 cut(s) 985
AasI GACNNNNNNGTC 1 cut(s) 1072
Acc36I ACCTGC 2 cut(s) 511, 985
AccB7I CCANNNNNTGG 2 cut(s) 1172, 1400
AccI GTMKAC 1 cut(s) 1405
AccIII TCCGGA 2 cut(s) 871, 1525
AciI CCGC 6 cut(s) 46, 401, 902, 993, 1273, 1450
AclWI GGATC 6 cut(s) 178, 411, 900, 1590, 1607, 1631
AcoI YGGCCR 3 cut(s) 1174, 1447, 1691
AcsI RAATTY 1 cut(s) 728
AcuI CTGAAG 2 cut(s) 198, 732
AcyI GRCGYC 1 cut(s) 970
AdeI CACNNNGTG 1 cut(s) 253
AfaI GTAC 5 cut(s) 246, 799, 1417, 1534, 1669
AgsI TTSAA 3 cut(s) 416, 1370, 1608
AjiI CACGTC 2 cut(s) 999, 1074
AjnI CCWGG 2 cut(s) 682, 1411
AloI GAACNNNNNNTCC 2 cut(s) 189, 221
AluBI AGCT 5 cut(s) 395, 829, 1486, 1689, 1703
AluI AGCT 5 cut(s) 395, 829, 1486, 1689, 1703
Alw21I GWGCWC 1 cut(s) 580
Alw26I GTCTC 2 cut(s) 684, 1483
AlwI GGATC 6 cut(s) 178, 411, 900, 1590, 1607, 1631
Ama87I CYCGRG 1 cut(s) 666
Aor13HI TCCGGA 2 cut(s) 871, 1525
ApaI GGGCCC 3 cut(s) 673, 836, 1016
ApeKI GCWGC 3 cut(s) 395, 398, 1700
ApoI RAATTY 1 cut(s) 728
AsuC2I CCSGG 2 cut(s) 1268, 1454
AsuHPI GGTGA 5 cut(s) 72, 1068, 1080, 1250, 1646
AvaI CYCGRG 1 cut(s) 666
AvaII GGWCC 3 cut(s) 422, 523, 1234
AxyI CCTNAGG 1 cut(s) 189
BaeGI GKGCMC 3 cut(s) 673, 836, 1016
BalI TGGCCA 2 cut(s) 1176, 1693
BanII GRGCYC 3 cut(s) 673, 836, 1016
BbsI GAAGAC 3 cut(s) 857, 1247, 1641
Bbv12I GWGCWC 1 cut(s) 580
BbvI GCAGC 3 cut(s) 382, 385, 1712
BccI CCATC 5 cut(s) 819, 1087, 1099, 1123, 1658
BciT130I CCWGG 2 cut(s) 684, 1413
BciVI GTATCC 1 cut(s) 1189
BcnI CCSGG 2 cut(s) 1268, 1454
BcoDI GTCTC 2 cut(s) 684, 1483
BfaI CTAG 1 cut(s) 1428
BfmI CTRYAG 2 cut(s) 819, 1295
BfuAI ACCTGC 2 cut(s) 511, 985
BfuI GTATCC 1 cut(s) 1189
BglII AGATCT 1 cut(s) 1373
BisI GCNGC 5 cut(s) 396, 399, 993, 1450, 1701
BlsI GCNGC 5 cut(s) 397, 400, 994, 1451, 1702
Bme1390I CCNGG 4 cut(s) 684, 1268, 1413, 1454
Bme18I GGWCC 3 cut(s) 422, 523, 1234
BmeT110I CYCGRG 1 cut(s) 666
BmgBI CACGTC 2 cut(s) 999, 1074
BmiI GGNNCC 8 cut(s) 384, 671, 672, 834, 1014, 1015, 1362, 1711
BmrFI CCNGG 4 cut(s) 684, 1268, 1413, 1454
BmsI GCATC 4 cut(s) 166, 913, 1394, 1526
BpiI GAAGAC 3 cut(s) 857, 1247, 1641
BplI GAGNNNNNCTC 2 cut(s) 1001, 1033
BpmI CTGGAG 1 cut(s) 666
BpuEI CTTGAG 3 cut(s) 503, 1301, 1497
BpuMI CCSGG 2 cut(s) 1268, 1454
BsaHI GRCGYC 1 cut(s) 970
BsaWI WCCGGW 2 cut(s) 871, 1525
Bse1I ACTGG 1 cut(s) 1364
Bse21I CCTNAGG 1 cut(s) 189
Bse3DI GCAATG 4 cut(s) 494, 1215, 1380, 1569
BseAI TCCGGA 2 cut(s) 871, 1525
BseBI CCWGG 2 cut(s) 684, 1413
BseGI GGATG 6 cut(s) 157, 204, 811, 846, 949, 1063
BseMI GCAATG 4 cut(s) 494, 1215, 1380, 1569
BseMII CTCAG 3 cut(s) 180, 593, 1560
BseNI ACTGG 1 cut(s) 1364
BseRI GAGGAG 3 cut(s) 9, 846, 849
BseSI GKGCMC 3 cut(s) 673, 836, 1016
BseXI GCAGC 3 cut(s) 382, 385, 1712
BseYI CCCAGC 3 cut(s) 220, 829, 1482
BsgI GTGCAG 3 cut(s) 279, 539, 1719
BsiHKAI GWGCWC 1 cut(s) 580
BsiHKCI CYCGRG 1 cut(s) 666
BsiSI CCGG 4 cut(s) 872, 1268, 1453, 1526
BslFI GGGAC 1 cut(s) 601
BsmAI GTCTC 2 cut(s) 684, 1483
BsmFI GGGAC 1 cut(s) 601
BsoBI CYCGRG 1 cut(s) 666
Bsp120I GGGCCC 3 cut(s) 669, 832, 1012
Bsp1286I GDGCHC 4 cut(s) 580, 673, 836, 1016
Bsp13I TCCGGA 2 cut(s) 871, 1525
Bsp1407I TGTACA 1 cut(s) 244
Bsp143I GATC 9 cut(s) 183, 229, 271, 403, 892, 1373, 1582, 1612, 1636
Bsp19I CCATGG 3 cut(s) 425, 526, 1356
BspACI CCGC 6 cut(s) 46, 401, 902, 993, 1273, 1450
BspCNI CTCAG 3 cut(s) 181, 592, 1559
BspEI TCCGGA 2 cut(s) 871, 1525
BspHI TCATGA 1 cut(s) 1498
BspLI GGNNCC 8 cut(s) 384, 671, 672, 834, 1014, 1015, 1362, 1711
BspMAI CTGCAG 2 cut(s) 823, 1299
BspMI ACCTGC 2 cut(s) 511, 985
BspPI GGATC 6 cut(s) 178, 411, 900, 1590, 1607, 1631
BsrDI GCAATG 4 cut(s) 494, 1215, 1380, 1569
BsrGI TGTACA 1 cut(s) 244
BsrI ACTGG 1 cut(s) 1364
BssMI GATC 9 cut(s) 183, 229, 271, 403, 892, 1373, 1582, 1612, 1636
BssNI GRCGYC 1 cut(s) 970
BssT1I CCWWGG 9 cut(s) 425, 461, 526, 632, 836, 953, 1146, 1356, 1394
Bst2UI CCWGG 2 cut(s) 684, 1413
Bst4CI ACNGT 3 cut(s) 592, 601, 929
Bst6I CTCTTC 3 cut(s) 97, 206, 1271
BstACI GRCGYC 1 cut(s) 970
BstAUI TGTACA 1 cut(s) 244
BstC8I GCNNGC 2 cut(s) 278, 1691
BstDEI CTNAG 4 cut(s) 189, 579, 1464, 1546
BstDSI CCRYGG 3 cut(s) 425, 526, 1356
BstEII GGTNACC 1 cut(s) 73
BstENI CCTNNNNNAGG 1 cut(s) 24
BstF5I GGATG 6 cut(s) 157, 204, 811, 846, 949, 1063
BstKTI GATC 9 cut(s) 186, 232, 274, 406, 895, 1376, 1585, 1615, 1639
BstMAI GTCTC 2 cut(s) 684, 1483
BstMBI GATC 9 cut(s) 183, 229, 271, 403, 892, 1373, 1582, 1612, 1636
BstMWI GCNNNNNNNGC 3 cut(s) 722, 1157, 1686
BstNI CCWGG 2 cut(s) 684, 1413
BstNSI RCATGY 1 cut(s) 1126
BstPI GGTNACC 1 cut(s) 73
BstSCI CCNGG 4 cut(s) 682, 1266, 1411, 1452
BstSFI CTRYAG 2 cut(s) 819, 1295
BstSLI GKGCMC 3 cut(s) 673, 836, 1016
BstV1I GCAGC 3 cut(s) 382, 385, 1712
BstV2I GAAGAC 3 cut(s) 857, 1247, 1641
BstX2I RGATCY 1 cut(s) 1373
BstXI CCANNNNNNTGG 1 cut(s) 690
BstYI RGATCY 1 cut(s) 1373
Bsu36I CCTNAGG 1 cut(s) 189
BsuI GTATCC 1 cut(s) 1189
BtgI CCRYGG 3 cut(s) 425, 526, 1356
BtrI CACGTC 2 cut(s) 999, 1074
BtsCI GGATG 6 cut(s) 157, 204, 811, 846, 949, 1063
BtsIMutI CAGTG 1 cut(s) 1089
BveI ACCTGC 2 cut(s) 511, 985
Cac8I GCNNGC 2 cut(s) 278, 1691
CciI TCATGA 1 cut(s) 1498
CseI GACGC 2 cut(s) 39, 959
Csp6I GTAC 5 cut(s) 245, 798, 1416, 1533, 1668
CviQI GTAC 5 cut(s) 245, 798, 1416, 1533, 1668
DdeI CTNAG 4 cut(s) 189, 579, 1464, 1546
DpnI GATC 9 cut(s) 185, 231, 273, 405, 894, 1375, 1584, 1614, 1638
DpnII GATC 9 cut(s) 183, 229, 271, 403, 892, 1373, 1582, 1612, 1636
DraIII CACNNNGTG 1 cut(s) 253
DrdI GACNNNNNNGTC 1 cut(s) 1072
DseDI GACNNNNNNGTC 1 cut(s) 1072
EaeI YGGCCR 3 cut(s) 1174, 1447, 1691
Eam1104I CTCTTC 3 cut(s) 97, 206, 1271
EarI CTCTTC 3 cut(s) 97, 206, 1271
Eco130I CCWWGG 9 cut(s) 425, 461, 526, 632, 836, 953, 1146, 1356, 1394
Eco24I GRGCYC 3 cut(s) 673, 836, 1016
Eco32I GATATC 1 cut(s) 1137
Eco47I GGWCC 3 cut(s) 422, 523, 1234
Eco57I CTGAAG 2 cut(s) 198, 732
Eco81I CCTNAGG 1 cut(s) 189
Eco88I CYCGRG 1 cut(s) 666
Eco91I GGTNACC 1 cut(s) 73
EcoNI CCTNNNNNAGG 1 cut(s) 24
EcoO109I RGGNCCY 4 cut(s) 670, 833, 1012, 1013
EcoO65I GGTNACC 1 cut(s) 73
EcoRII CCWGG 2 cut(s) 682, 1411
EcoRV GATATC 1 cut(s) 1137
EcoT14I CCWWGG 9 cut(s) 425, 461, 526, 632, 836, 953, 1146, 1356, 1394
EcoT38I GRGCYC 3 cut(s) 673, 836, 1016
ErhI CCWWGG 9 cut(s) 425, 461, 526, 632, 836, 953, 1146, 1356, 1394
FaqI GGGAC 1 cut(s) 601
FauI CCCGC 1 cut(s) 909
FblI GTMKAC 1 cut(s) 1405
Fnu4HI GCNGC 5 cut(s) 396, 399, 993, 1450, 1701
FokI GGATG 6 cut(s) 144, 191, 798, 853, 936, 1070
FriOI GRGCYC 3 cut(s) 673, 836, 1016
Fsp4HI GCNGC 5 cut(s) 396, 399, 993, 1450, 1701
FspBI CTAG 1 cut(s) 1428
GluI GCNGC 5 cut(s) 396, 399, 993, 1450, 1701
GsaI CCCAGC 3 cut(s) 224, 833, 1486
GsuI CTGGAG 1 cut(s) 666
HapII CCGG 4 cut(s) 872, 1268, 1453, 1526
HgaI GACGC 2 cut(s) 39, 959
Hin1I GRCGYC 1 cut(s) 970
HincII GTYRAC 2 cut(s) 597, 881
HindII GTYRAC 2 cut(s) 597, 881
HinfI GANTC 7 cut(s) 298, 662, 853, 919, 1184, 1336, 1567
HpaII CCGG 4 cut(s) 872, 1268, 1453, 1526
HphI GGTGA 5 cut(s) 72, 1068, 1080, 1250, 1646
Hpy166II GTNNAC 6 cut(s) 247, 597, 661, 881, 974, 1406
Hpy188I TCNGA 8 cut(s) 271, 391, 549, 582, 852, 909, 1663, 1714
Hpy188III TCNNGA 7 cut(s) 239, 872, 1318, 1340, 1499, 1526, 1616
Hpy8I GTNNAC 6 cut(s) 247, 597, 661, 881, 974, 1406
Hpy99I CGWCG 1 cut(s) 810
HpyAV CCTTC 7 cut(s) 122, 126, 179, 825, 1179, 1462, 1668
HpyCH4III ACNGT 3 cut(s) 592, 601, 929
HpyCH4IV ACGT 2 cut(s) 998, 1073
HpyF10VI GCNNNNNNNGC 3 cut(s) 722, 1157, 1686
HpyF3I CTNAG 4 cut(s) 189, 579, 1464, 1546
HpySE526I ACGT 2 cut(s) 998, 1073
Hsp92I GRCGYC 1 cut(s) 970
Kpn2I TCCGGA 2 cut(s) 871, 1525
Kzo9I GATC 9 cut(s) 183, 229, 271, 403, 892, 1373, 1582, 1612, 1636
LmnI GCTCC 2 cut(s) 292, 1491
Lsp1109I GCAGC 3 cut(s) 382, 385, 1712
LweI GCATC 4 cut(s) 166, 913, 1394, 1526
MaeI CTAG 1 cut(s) 1428
MaeII ACGT 2 cut(s) 998, 1073
MaeIII GTNAC 6 cut(s) 73, 408, 505, 1074, 1086, 1281
MalI GATC 9 cut(s) 185, 231, 273, 405, 894, 1375, 1584, 1614, 1638
MboI GATC 9 cut(s) 183, 229, 271, 403, 892, 1373, 1582, 1612, 1636
MboII GAAGA 8 cut(s) 84, 111, 193, 857, 1247, 1288, 1545, 1641
MfeI CAATTG 1 cut(s) 1608
MflI RGATCY 1 cut(s) 1373
MhlI GDGCHC 4 cut(s) 580, 673, 836, 1016
MlsI TGGCCA 2 cut(s) 1176, 1693
MluCI AATT 6 cut(s) 327, 728, 886, 939, 1443, 1608
MluNI TGGCCA 2 cut(s) 1176, 1693
MlyI GAGTC 4 cut(s) 656, 847, 928, 1178
MmeI TCCRAC 4 cut(s) 232, 299, 875, 1044
Mox20I TGGCCA 2 cut(s) 1176, 1693
MroI TCCGGA 2 cut(s) 871, 1525
MscI TGGCCA 2 cut(s) 1176, 1693
MseI TTAA 1 cut(s) 696
MslI CAYNNNNRTG 1 cut(s) 1127
Msp20I TGGCCA 2 cut(s) 1176, 1693
MspI CCGG 4 cut(s) 872, 1268, 1453, 1526
MspR9I CCNGG 4 cut(s) 684, 1268, 1413, 1454
MunI CAATTG 1 cut(s) 1608
MvaI CCWGG 2 cut(s) 684, 1413
MwoI GCNNNNNNNGC 3 cut(s) 722, 1157, 1686
NciI CCSGG 2 cut(s) 1268, 1454
NcoI CCATGG 3 cut(s) 425, 526, 1356
NdeII GATC 9 cut(s) 183, 229, 271, 403, 892, 1373, 1582, 1612, 1636
NlaIV GGNNCC 8 cut(s) 384, 671, 672, 834, 1014, 1015, 1362, 1711
NmuCI GTSAC 2 cut(s) 1074, 1086
NspI RCATGY 1 cut(s) 1126
PagI TCATGA 1 cut(s) 1498
PaqCI CACCTGC 1 cut(s) 985
PcsI WCGNNNNNNNCGW 1 cut(s) 928
PfeI GAWTC 3 cut(s) 298, 1336, 1567
PflMI CCANNNNNTGG 2 cut(s) 1172, 1400
PkrI GCNGC 5 cut(s) 397, 400, 994, 1451, 1702
PleI GAGTC 4 cut(s) 656, 847, 927, 1178
PpsI GAGTC 4 cut(s) 656, 847, 927, 1178
PsiI TTATAA 1 cut(s) 11
Psp6I CCWGG 2 cut(s) 682, 1411
PspEI GGTNACC 1 cut(s) 73
PspFI CCCAGC 3 cut(s) 220, 829, 1482
PspGI CCWGG 2 cut(s) 682, 1411
PspN4I GGNNCC 8 cut(s) 384, 671, 672, 834, 1014, 1015, 1362, 1711
PspOMI GGGCCC 3 cut(s) 669, 832, 1012
PstI CTGCAG 2 cut(s) 823, 1299
PsuI RGATCY 1 cut(s) 1373
RsaI GTAC 5 cut(s) 246, 799, 1417, 1534, 1669
RsaNI GTAC 5 cut(s) 245, 798, 1416, 1533, 1668
RseI CAYNNNNRTG 1 cut(s) 1127
SaqAI TTAA 1 cut(s) 696
SatI GCNGC 5 cut(s) 396, 399, 993, 1450, 1701
Sau3AI GATC 9 cut(s) 183, 229, 271, 403, 892, 1373, 1582, 1612, 1636
SchI GAGTC 4 cut(s) 656, 847, 928, 1178
ScrFI CCNGG 4 cut(s) 684, 1268, 1413, 1454
SduI GDGCHC 4 cut(s) 580, 673, 836, 1016
SfaNI GCATC 4 cut(s) 166, 913, 1394, 1526
SfcI CTRYAG 2 cut(s) 819, 1295
SinI GGWCC 3 cut(s) 422, 523, 1234
SmiMI CAYNNNNRTG 1 cut(s) 1127
SmlI CTYRAG 3 cut(s) 482, 1316, 1512
SmoI CTYRAG 3 cut(s) 482, 1316, 1512
Sse9I AATT 6 cut(s) 327, 728, 886, 939, 1443, 1608
SsiI CCGC 6 cut(s) 46, 401, 902, 993, 1273, 1450
SspMI CTAG 1 cut(s) 1428
StyD4I CCNGG 4 cut(s) 682, 1266, 1411, 1452
StyI CCWWGG 9 cut(s) 425, 461, 526, 632, 836, 953, 1146, 1356, 1394
TaaI ACNGT 3 cut(s) 592, 601, 929
TaiI ACGT 2 cut(s) 1001, 1076
TaqI TCGA 3 cut(s) 238, 649, 931
TasI AATT 6 cut(s) 327, 728, 886, 939, 1443, 1608
TatI WGTACW 2 cut(s) 244, 797
TauI GCSGC 2 cut(s) 995, 1452
TfiI GAWTC 3 cut(s) 298, 1336, 1567
Tru1I TTAA 1 cut(s) 696
Tru9I TTAA 1 cut(s) 696
TscAI CASTG 1 cut(s) 1089
TseFI GTSAC 2 cut(s) 1074, 1086
TseI GCWGC 3 cut(s) 395, 398, 1700
Tsp45I GTSAC 2 cut(s) 1074, 1086
TspDTI ATGAA 6 cut(s) 41, 193, 272, 753, 972, 1580
TspGWI ACGGA 3 cut(s) 279, 794, 1635
TspRI CASTG 1 cut(s) 1089
Van91I CCANNNNNTGG 2 cut(s) 1172, 1400
VpaK11BI GGWCC 3 cut(s) 422, 523, 1234
XagI CCTNNNNNAGG 1 cut(s) 24
XapI RAATTY 1 cut(s) 728
XceI RCATGY 1 cut(s) 1126
XmiI GTMKAC 1 cut(s) 1405
XspI CTAG 1 cut(s) 1428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.