Rh1DG078600

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000073
Physical Location & Seq
Forward (+)
14402810 .. 14404177
1368 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG078600.1

Sequence Viewer

Length: 1167 bp
ATGGAACTGGGTTCTTCAACCACGGCAACTTACCAACCCCAGACAACTGCCGTTATCAGGATCTTGGCTCGTGCTTGGGAAAACTTTGGTGAAGTTCACATTGAATCCATCCGAGACAACCGAACCTTTTCCATCACCCCTTTGGCCCCAGACGGGGGTCAACTTATCCTTGACCGGGGTCCTTGGTCCGTCATGGGTCACACTGTCAGCGTTCACCTCTGGCCTCTTGAGGCTCGACTTGAGGATGTCCCCCTCCACCTCCTATCCATCTGGATCCAAGCTCATGGCCTCCAACGGGGCCAAATGACAACTGAAAATGCCCACCTTCTTGGTGCAACTGCTGGTACTGTCCTGGAGGTGGAAAACCCCAATGTTGTCAACTGTTGGAGGAGCTTTCTCCGTTTTCGTGTTTCCATCGACTCTAGGCACCCAATCACTCCGGGGGTCTGGATCCGTTGTGGATCACGTCTACCTATTTGGGTTGAGTTCAGGTATGAAAGAATATCTCTGTTTTGCTATAATTGTGGTCGACTTGGTCACAGTGCTAGGTTCTGCAATAATGAACGCCACCCCAGAGCGGAGACAATGGGTGTTTGGATGTTGTCCCCGGCAGCTCGACGCCTTATTGTTACCCCTTCTGAGGGAGAACAGGGTTGGGACCGCTTTCAACGTCAGAACTTTCAGAATCGACAAAATCGCTGGGCTTTTTCGGACCCCCCAACCCCTGTCACTACCCACCTGCTGCAAACAACCGATCGGATGGTGCCGGAGGTCCCTCGCAACAGAGGAGCCCTGATTATCTCCGAAATCTCTCAGGAGAACTCTCCCATTCCTTCCCCACCAGCAAATCACAGAAATAGAGGCACTATAATCATCTCTGAACCATCCATGGATGCTCCTCTGCCAAGAACATCACCGGTCCATCCACTATGCTGCACCTGTAAGACAACAACTCCAGCCTCCCTTTACAAAGGGAAAGGGAAAGCCCCTCTTGTTGAAGATCCTGCCCCTCATATGGAATCTGAATCTGAACATCATATGCATTCAAGCCCTGGTCCTTCTTCTTTCCCTACCCTTGGTCCTTCGGGTGAACTCTCAATGGGAAGGACTCACTTTTTCTTCGATACAAACACAAATGACTTCATTCCCATAACCCAAGATACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4 zf-RING_2

Protein Analysis

388

Amino Acids

43.58

Weight (kDa)

6.99

Isoelectric Point (pI)

46.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 139 - 186 5.2e-14 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 747
Acc36I ACCTGC 1 cut(s) 747
AccB1I GGYRCC 2 cut(s) 426, 763
AccBSI CCGCTC 1 cut(s) 578
AccI GTMKAC 2 cut(s) 469, 529
AciI CCGC 2 cut(s) 578, 661
AclWI GGATC 7 cut(s) 68, 268, 281, 445, 458, 469, 995
AcyI GRCGYC 1 cut(s) 619
AfaI GTAC 1 cut(s) 346
AgeI ACCGGT 1 cut(s) 916
AgsI TTSAA 5 cut(s) 18, 104, 668, 998, 1047
AjiI CACGTC 1 cut(s) 467
AjnI CCWGG 2 cut(s) 351, 1051
AluBI AGCT 3 cut(s) 281, 393, 614
AluI AGCT 3 cut(s) 281, 393, 614
Alw26I GTCTC 2 cut(s) 108, 575
AlwI GGATC 7 cut(s) 68, 268, 281, 445, 458, 469, 995
AoxI GGCC 4 cut(s) 144, 221, 286, 298
ApeKI GCWGC 3 cut(s) 611, 742, 933
AsiGI ACCGGT 1 cut(s) 916
Asp700I GAANNNNTTC 1 cut(s) 127
AsuC2I CCSGG 3 cut(s) 176, 441, 608
AsuHPI GGTGA 5 cut(s) 101, 127, 206, 906, 1100
AvaII GGWCC 8 cut(s) 179, 186, 658, 712, 772, 919, 1055, 1079
BamHI GGATCC 2 cut(s) 273, 450
BanI GGYRCC 2 cut(s) 426, 763
BanII GRGCYC 1 cut(s) 793
BauI CACGAG 1 cut(s) 69
BbvI GCAGC 3 cut(s) 623, 729, 920
BccI CCATC 7 cut(s) 116, 140, 275, 422, 754, 892, 930
BceAI ACGGC 2 cut(s) 35, 39
BciT130I CCWGG 2 cut(s) 353, 1053
BcnI CCSGG 3 cut(s) 176, 441, 608
BcoDI GTCTC 2 cut(s) 108, 575
BfaI CTAG 2 cut(s) 423, 546
BfuAI ACCTGC 1 cut(s) 747
BisI GCNGC 3 cut(s) 612, 743, 934
BlsI GCNGC 3 cut(s) 613, 744, 935
Bme1390I CCNGG 5 cut(s) 176, 353, 441, 608, 1053
Bme18I GGWCC 8 cut(s) 179, 186, 658, 712, 772, 919, 1055, 1079
BmgBI CACGTC 1 cut(s) 467
BmrFI CCNGG 5 cut(s) 176, 353, 441, 608, 1053
BmrI ACTGGG 1 cut(s) 17
BmsI GCATC 1 cut(s) 883
BmuI ACTGGG 1 cut(s) 17
BoxI GACNNNNGTC 2 cut(s) 156, 177
BpmI CTGGAG 2 cut(s) 374, 939
BpuEI CTTGAG 2 cut(s) 248, 260
BpuMI CCSGG 3 cut(s) 176, 441, 608
BsaHI GRCGYC 1 cut(s) 619
BsaJI CCNNGG 8 cut(s) 21, 175, 182, 440, 606, 888, 1051, 1075
BsaWI WCCGGW 1 cut(s) 916
BsaXI ACNNNNNCTCC 2 cut(s) 937, 967
Bse118I RCCGGY 1 cut(s) 916
Bse1I ACTGG 1 cut(s) 12
BseBI CCWGG 2 cut(s) 353, 1053
BseDI CCNNGG 8 cut(s) 21, 175, 182, 440, 606, 888, 1051, 1075
BseGI GGATG 7 cut(s) 108, 250, 603, 765, 884, 898, 922
BseMII CTCAG 2 cut(s) 630, 827
BseNI ACTGG 1 cut(s) 12
BseRI GAGGAG 3 cut(s) 403, 801, 888
BseXI GCAGC 3 cut(s) 623, 729, 920
BseYI CCCAGC 1 cut(s) 699
BsgI GTGCAG 1 cut(s) 919
Bsh1285I CGRYCG 1 cut(s) 757
BshFI GGCC 4 cut(s) 146, 223, 288, 300
BshNI GGYRCC 2 cut(s) 426, 763
BshTI ACCGGT 1 cut(s) 916
BsiEI CGRYCG 1 cut(s) 757
BsiSI CCGG 5 cut(s) 175, 440, 608, 767, 917
BslFI GGGAC 4 cut(s) 233, 589, 671, 758
BsmAI GTCTC 2 cut(s) 108, 575
BsmFI GGGAC 4 cut(s) 233, 589, 671, 758
BsmI GAATGC 1 cut(s) 1042
BsnI GGCC 4 cut(s) 146, 223, 288, 300
Bsp1286I GDGCHC 1 cut(s) 793
Bsp143I GATC 6 cut(s) 60, 273, 450, 461, 754, 1000
Bsp19I CCATGG 1 cut(s) 888
BspACI CCGC 2 cut(s) 578, 661
BspANI GGCC 4 cut(s) 146, 223, 288, 300
BspCNI CTCAG 2 cut(s) 631, 826
BspMI ACCTGC 1 cut(s) 747
BspPI GGATC 7 cut(s) 68, 268, 281, 445, 458, 469, 995
BspT107I GGYRCC 2 cut(s) 426, 763
BsrBI CCGCTC 1 cut(s) 578
BsrFI RCCGGY 1 cut(s) 916
BsrI ACTGG 1 cut(s) 12
BssAI RCCGGY 1 cut(s) 916
BssECI CCNNGG 8 cut(s) 21, 175, 182, 440, 606, 888, 1051, 1075
BssMI GATC 6 cut(s) 60, 273, 450, 461, 754, 1000
BssNI GRCGYC 1 cut(s) 619
BssSI CACGAG 1 cut(s) 69
BssT1I CCWWGG 3 cut(s) 182, 888, 1075
Bst2BI CACGAG 1 cut(s) 69
Bst2UI CCWGG 2 cut(s) 353, 1053
Bst4CI ACNGT 4 cut(s) 205, 349, 383, 542
BstACI GRCGYC 1 cut(s) 619
BstDEI CTNAG 2 cut(s) 639, 813
BstDSI CCRYGG 2 cut(s) 21, 888
BstF5I GGATG 7 cut(s) 108, 250, 603, 765, 884, 898, 922
BstKTI GATC 6 cut(s) 63, 276, 453, 464, 757, 1003
BstMAI GTCTC 2 cut(s) 108, 575
BstMBI GATC 6 cut(s) 60, 273, 450, 461, 754, 1000
BstMCI CGRYCG 1 cut(s) 757
BstNI CCWGG 2 cut(s) 353, 1053
BstPAI GACNNNNGTC 2 cut(s) 156, 177
BstSCI CCNGG 5 cut(s) 174, 351, 439, 606, 1051
BstV1I GCAGC 3 cut(s) 623, 729, 920
BstX2I RGATCY 4 cut(s) 60, 273, 450, 1000
BstXI CCANNNNNNTGG 2 cut(s) 284, 329
BstYI RGATCY 4 cut(s) 60, 273, 450, 1000
BsuRI GGCC 4 cut(s) 146, 223, 288, 300
BtgI CCRYGG 2 cut(s) 21, 888
BtrI CACGTC 1 cut(s) 467
BtsCI GGATG 7 cut(s) 108, 250, 603, 765, 884, 898, 922
BtsIMutI CAGTG 2 cut(s) 201, 547
BveI ACCTGC 1 cut(s) 747
Cfr10I RCCGGY 1 cut(s) 916
CseI GACGC 1 cut(s) 627
Csp6I GTAC 1 cut(s) 345
CspAI ACCGGT 1 cut(s) 916
CviAII CATG 3 cut(s) 193, 284, 889
CviQI GTAC 1 cut(s) 345
DdeI CTNAG 2 cut(s) 639, 813
DpnI GATC 6 cut(s) 62, 275, 452, 463, 756, 1002
DpnII GATC 6 cut(s) 60, 273, 450, 461, 754, 1000
Eco130I CCWWGG 3 cut(s) 182, 888, 1075
Eco24I GRGCYC 1 cut(s) 793
Eco47I GGWCC 8 cut(s) 179, 186, 658, 712, 772, 919, 1055, 1079
EcoO109I RGGNCCY 2 cut(s) 179, 772
EcoRII CCWGG 2 cut(s) 351, 1051
EcoT14I CCWWGG 3 cut(s) 182, 888, 1075
EcoT22I ATGCAT 1 cut(s) 1044
EcoT38I GRGCYC 1 cut(s) 793
ErhI CCWWGG 3 cut(s) 182, 888, 1075
FaeI CATG 3 cut(s) 196, 287, 892
FalI AAGNNNNNCTT 2 cut(s) 975, 1007
FaqI GGGAC 4 cut(s) 233, 589, 671, 758
FatI CATG 3 cut(s) 192, 283, 888
FauNDI CATATG 2 cut(s) 1014, 1038
FblI GTMKAC 2 cut(s) 469, 529
Fnu4HI GCNGC 3 cut(s) 612, 743, 934
FokI GGATG 7 cut(s) 95, 257, 610, 772, 871, 905, 909
FriOI GRGCYC 1 cut(s) 793
Fsp4HI GCNGC 3 cut(s) 612, 743, 934
FspBI CTAG 2 cut(s) 423, 546
GluI GCNGC 3 cut(s) 612, 743, 934
GsaI CCCAGC 1 cut(s) 703
GsuI CTGGAG 2 cut(s) 374, 939
HaeIII GGCC 4 cut(s) 146, 223, 288, 300
HapII CCGG 5 cut(s) 175, 440, 608, 767, 917
HgaI GACGC 1 cut(s) 627
Hin1I GRCGYC 1 cut(s) 619
Hin1II CATG 3 cut(s) 196, 287, 892
HincII GTYRAC 3 cut(s) 161, 379, 530
HindII GTYRAC 3 cut(s) 161, 379, 530
HinfI GANTC 6 cut(s) 104, 419, 685, 1019, 1025, 1108
HpaII CCGG 5 cut(s) 175, 440, 608, 767, 917
HphI GGTGA 5 cut(s) 101, 127, 206, 906, 1100
Hpy166II GTNNAC 7 cut(s) 97, 161, 214, 379, 470, 530, 1091
Hpy188III TCNNGA 5 cut(s) 58, 227, 271, 448, 815
Hpy8I GTNNAC 7 cut(s) 97, 161, 214, 379, 470, 530, 1091
Hpy99I CGWCG 1 cut(s) 621
HpyAV CCTTC 6 cut(s) 335, 645, 843, 1068, 1092, 1098
HpyCH4III ACNGT 4 cut(s) 205, 349, 383, 542
HpyCH4IV ACGT 2 cut(s) 466, 670
HpyCH4V TGCA 5 cut(s) 335, 555, 745, 936, 1042
HpyF3I CTNAG 2 cut(s) 639, 813
HpySE526I ACGT 2 cut(s) 466, 670
Hsp92I GRCGYC 1 cut(s) 619
Hsp92II CATG 3 cut(s) 196, 287, 892
Kzo9I GATC 6 cut(s) 60, 273, 450, 461, 754, 1000
LmnI GCTCC 3 cut(s) 390, 788, 901
Lsp1109I GCAGC 3 cut(s) 623, 729, 920
LweI GCATC 1 cut(s) 883
MaeI CTAG 2 cut(s) 423, 546
MaeII ACGT 2 cut(s) 466, 670
MaeIII GTNAC 4 cut(s) 197, 536, 628, 727
MalI GATC 6 cut(s) 62, 275, 452, 463, 756, 1002
MbiI CCGCTC 1 cut(s) 578
MboI GATC 6 cut(s) 60, 273, 450, 461, 754, 1000
MboII GAAGA 4 cut(s) 6, 1010, 1053, 1111
MflI RGATCY 4 cut(s) 60, 273, 450, 1000
MhlI GDGCHC 1 cut(s) 793
MluCI AATT 1 cut(s) 520
MlyI GAGTC 2 cut(s) 413, 1102
MmeI TCCRAC 2 cut(s) 316, 365
Mph1103I ATGCAT 1 cut(s) 1044
MroXI GAANNNNTTC 1 cut(s) 127
MseI TTAA 1 cut(s) 1165
MspI CCGG 5 cut(s) 175, 440, 608, 767, 917
MspR9I CCNGG 5 cut(s) 176, 353, 441, 608, 1053
Mva1269I GAATGC 1 cut(s) 1042
MvaI CCWGG 2 cut(s) 353, 1053
NciI CCSGG 3 cut(s) 176, 441, 608
NcoI CCATGG 1 cut(s) 888
NdeI CATATG 2 cut(s) 1014, 1038
NdeII GATC 6 cut(s) 60, 273, 450, 461, 754, 1000
NlaIII CATG 3 cut(s) 196, 287, 892
NmuCI GTSAC 3 cut(s) 197, 536, 727
NsiI ATGCAT 1 cut(s) 1044
PaqCI CACCTGC 1 cut(s) 747
PctI GAATGC 1 cut(s) 1042
PdmI GAANNNNTTC 1 cut(s) 127
PfeI GAWTC 4 cut(s) 104, 685, 1019, 1025
PflFI GACNNNGTC 1 cut(s) 534
PfoI TCCNGGA 1 cut(s) 351
PinAI ACCGGT 1 cut(s) 916
PkrI GCNGC 3 cut(s) 613, 744, 935
Ple19I CGATCG 1 cut(s) 757
PleI GAGTC 2 cut(s) 413, 1102
PpsI GAGTC 2 cut(s) 413, 1102
PpuMI RGGWCCY 2 cut(s) 179, 772
PshAI GACNNNNGTC 2 cut(s) 156, 177
Psp5II RGGWCCY 2 cut(s) 179, 772
Psp6I CCWGG 2 cut(s) 351, 1051
PspFI CCCAGC 1 cut(s) 699
PspGI CCWGG 2 cut(s) 351, 1051
PspPPI RGGWCCY 2 cut(s) 179, 772
PsuI RGATCY 4 cut(s) 60, 273, 450, 1000
PsyI GACNNNGTC 1 cut(s) 534
PvuI CGATCG 1 cut(s) 757
RsaI GTAC 1 cut(s) 346
RsaNI GTAC 1 cut(s) 345
SalI GTCGAC 1 cut(s) 528
SaqAI TTAA 1 cut(s) 1165
SatI GCNGC 3 cut(s) 612, 743, 934
Sau3AI GATC 6 cut(s) 60, 273, 450, 461, 754, 1000
SchI GAGTC 2 cut(s) 413, 1102
ScrFI CCNGG 5 cut(s) 176, 353, 441, 608, 1053
SduI GDGCHC 1 cut(s) 793
SfaNI GCATC 1 cut(s) 883
SinI GGWCC 8 cut(s) 179, 186, 658, 712, 772, 919, 1055, 1079
SmlI CTYRAG 2 cut(s) 227, 239
SmoI CTYRAG 2 cut(s) 227, 239
Sse9I AATT 1 cut(s) 520
SsiI CCGC 2 cut(s) 578, 661
SspMI CTAG 2 cut(s) 423, 546
StyD4I CCNGG 5 cut(s) 174, 351, 439, 606, 1051
StyI CCWWGG 3 cut(s) 182, 888, 1075
TaaI ACNGT 4 cut(s) 205, 349, 383, 542
TaiI ACGT 2 cut(s) 469, 673
TaqI TCGA 6 cut(s) 235, 417, 529, 616, 688, 1122
TasI AATT 1 cut(s) 520
TfiI GAWTC 4 cut(s) 104, 685, 1019, 1025
Tru1I TTAA 1 cut(s) 1165
Tru9I TTAA 1 cut(s) 1165
TscAI CASTG 2 cut(s) 208, 547
TseFI GTSAC 3 cut(s) 197, 536, 727
TseI GCWGC 3 cut(s) 611, 742, 933
Tsp45I GTSAC 3 cut(s) 197, 536, 727
TspDTI ATGAA 3 cut(s) 510, 576, 1132
TspGWI ACGGA 3 cut(s) 178, 389, 443
TspRI CASTG 2 cut(s) 208, 547
Tth111I GACNNNGTC 1 cut(s) 534
VpaK11BI GGWCC 8 cut(s) 179, 186, 658, 712, 772, 919, 1055, 1079
XcmI CCANNNNNNNNNTGG 1 cut(s) 139
XmiI GTMKAC 2 cut(s) 469, 529
XmnI GAANNNNTTC 1 cut(s) 127
XspI CTAG 2 cut(s) 423, 546
Zsp2I ATGCAT 1 cut(s) 1044
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.