Rh3AG303600

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000073
Physical Location & Seq
Reverse (-)
37487350 .. 37491321
3972 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG303600.1

Sequence Viewer

Length: 690 bp
ATGGCTTGGGCTGACTTTGGGGAGGTCCACATTGAAGCTATCTGTGATCATCAGACTTTTACAATCACCACTATGGAGGGGGAAACTGGACAGCAGATCCTGGACAAAGGTCCTTGGTCGGTCATGGGTCACACCATCAGTATAAACACTTGGCTGCTTGATGCCAGACTTGAGGATGTCCCGGTTCACCTCCTCGCTATTTGGATCCAGGCTCACGGCCTACCTCGGGGCCAAATGACTAAGGAAAATGCTCAACTTCTAGGCGCGGTTGCTGGGTCAGTTCTCACTATTGAGAATCCCAATACCACAAATGGGTGGAGAGGCTTCCTGCGAGTCCGGGTGAACATCAACACTCAAATGCCCCTCGTTCCAGGGGTGTGGATCAGAGGTGGATCAACTCCCCCTATTATGGAAGGGATTAGAGCAACTCTGACTCCTACAGGGACAGAAACTCCAACTGCAGATTCTAGTATTGGAACTACTCCCACACCAACTCCTCAGCCTACAGTTGATCAAGGTGCAGCACCAGTTCCAGCAGTTCCAGGACTTCCACCAATACCACCAGTTCCAGGTGACCCTGATGGGAGTTCAAGCAAAATCCAGCCGAAGGGAATTCTGATTATGAAGATTGAAGAATGGAGGCCGAAGCAATTTTCCGGCATAACTTTGGATTGTTCAAATATTCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4 zf-RING_2

Protein Analysis

229

Amino Acids

24.58

Weight (kDa)

5.3

Isoelectric Point (pI)

37.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 266
AciI CCGC 1 cut(s) 266
AclWI GGATC 5 cut(s) 91, 199, 212, 389, 400
AcsI RAATTY 1 cut(s) 612
AfiI CCNNNNNNNGG 5 cut(s) 226, 312, 409, 569, 607
AgsI TTSAA 4 cut(s) 35, 591, 632, 678
AjnI CCWGG 5 cut(s) 99, 207, 370, 541, 568
AjuI GAANNNNNNNTTGG 2 cut(s) 448, 480
AluBI AGCT 1 cut(s) 38
AluI AGCT 1 cut(s) 38
AlwI GGATC 5 cut(s) 91, 199, 212, 389, 400
AlwNI CAGNNNCTG 1 cut(s) 100
Ama87I CYCGRG 1 cut(s) 225
AoxI GGCC 3 cut(s) 217, 229, 641
ApeKI GCWGC 2 cut(s) 154, 521
ApoI RAATTY 1 cut(s) 612
AspLEI GCGC 1 cut(s) 266
AspS9I GGNCC 3 cut(s) 25, 110, 229
AsuC2I CCSGG 2 cut(s) 182, 338
AsuHPI GGTGA 4 cut(s) 58, 179, 352, 584
AvaI CYCGRG 1 cut(s) 225
AvaII GGWCC 2 cut(s) 25, 110
BamHI GGATCC 1 cut(s) 204
BbvCI CCTCAGC 1 cut(s) 498
BbvI GCAGC 2 cut(s) 141, 533
BccI CCATC 2 cut(s) 143, 575
BceAI ACGGC 1 cut(s) 232
BciT130I CCWGG 5 cut(s) 101, 209, 372, 543, 570
BclI TGATCA 2 cut(s) 46, 511
BcnI CCSGG 2 cut(s) 182, 338
BfaI CTAG 2 cut(s) 260, 468
BfmI CTRYAG 3 cut(s) 438, 459, 504
BisI GCNGC 2 cut(s) 155, 522
BlsI GCNGC 2 cut(s) 156, 523
Bme1390I CCNGG 7 cut(s) 101, 182, 209, 338, 372, 543, 570
Bme18I GGWCC 2 cut(s) 25, 110
BmeT110I CYCGRG 1 cut(s) 225
BmgT120I GGNCC 3 cut(s) 25, 110, 229
BmiI GGNNCC 2 cut(s) 206, 230
BmrFI CCNGG 7 cut(s) 101, 182, 209, 338, 372, 543, 570
BmsI GCATC 1 cut(s) 151
BoxI GACNNNNGTC 1 cut(s) 108
Bpu10I CCTNAGC 1 cut(s) 498
BpuEI CTTGAG 1 cut(s) 191
BpuMI CCSGG 2 cut(s) 182, 338
BsaJI CCNNGG 3 cut(s) 113, 224, 371
BsaXI ACNNNNNCTCC 6 cut(s) 418, 436, 448, 466, 478, 508
Bsc4I CCNNNNNNNGG 5 cut(s) 226, 312, 409, 569, 607
Bse1I ACTGG 3 cut(s) 91, 527, 563
BseBI CCWGG 5 cut(s) 101, 209, 372, 543, 570
BseDI CCNNGG 3 cut(s) 113, 224, 371
BseGI GGATG 1 cut(s) 181
BseLI CCNNNNNNNGG 5 cut(s) 226, 312, 409, 569, 607
BseMII CTCAG 1 cut(s) 512
BseNI ACTGG 3 cut(s) 91, 527, 563
BseRI GAGGAG 2 cut(s) 182, 486
BseXI GCAGC 2 cut(s) 141, 533
BseYI CCCAGC 1 cut(s) 272
BsgI GTGCAG 1 cut(s) 540
Bsh1236I CGCG 1 cut(s) 266
BshFI GGCC 3 cut(s) 219, 231, 643
BsiHKCI CYCGRG 1 cut(s) 225
BsiSI CCGG 3 cut(s) 182, 337, 657
BslFI GGGAC 2 cut(s) 164, 457
BslI CCNNNNNNNGG 5 cut(s) 226, 312, 409, 569, 607
BsmFI GGGAC 2 cut(s) 164, 457
BsnI GGCC 3 cut(s) 219, 231, 643
BsoBI CYCGRG 1 cut(s) 225
Bsp143I GATC 6 cut(s) 46, 96, 204, 381, 392, 511
BspACI CCGC 1 cut(s) 266
BspANI GGCC 3 cut(s) 219, 231, 643
BspCNI CTCAG 1 cut(s) 511
BspFNI CGCG 1 cut(s) 266
BspLI GGNNCC 2 cut(s) 206, 230
BspMAI CTGCAG 1 cut(s) 463
BspPI GGATC 5 cut(s) 91, 199, 212, 389, 400
BsrI ACTGG 3 cut(s) 91, 527, 563
BssECI CCNNGG 3 cut(s) 113, 224, 371
BssMI GATC 6 cut(s) 46, 96, 204, 381, 392, 511
BssT1I CCWWGG 1 cut(s) 113
Bst2UI CCWGG 5 cut(s) 101, 209, 372, 543, 570
Bst4CI ACNGT 1 cut(s) 508
BstDEI CTNAG 2 cut(s) 240, 498
BstEII GGTNACC 1 cut(s) 572
BstF5I GGATG 1 cut(s) 181
BstFNI CGCG 1 cut(s) 266
BstHHI GCGC 1 cut(s) 266
BstKTI GATC 6 cut(s) 49, 99, 207, 384, 395, 514
BstMBI GATC 6 cut(s) 46, 96, 204, 381, 392, 511
BstNI CCWGG 5 cut(s) 101, 209, 372, 543, 570
BstPAI GACNNNNGTC 1 cut(s) 108
BstPI GGTNACC 1 cut(s) 572
BstSCI CCNGG 7 cut(s) 99, 180, 207, 336, 370, 541, 568
BstSFI CTRYAG 3 cut(s) 438, 459, 504
BstUI CGCG 1 cut(s) 266
BstV1I GCAGC 2 cut(s) 141, 533
BstX2I RGATCY 2 cut(s) 96, 204
BstXI CCANNNNNNTGG 1 cut(s) 378
BstYI RGATCY 2 cut(s) 96, 204
BsuRI GGCC 3 cut(s) 219, 231, 643
BtsCI GGATG 1 cut(s) 181
CaiI CAGNNNCTG 1 cut(s) 100
CfoI GCGC 1 cut(s) 266
Cfr13I GGNCC 3 cut(s) 25, 110, 229
CviAII CATG 1 cut(s) 124
DdeI CTNAG 2 cut(s) 240, 498
DpnI GATC 6 cut(s) 48, 98, 206, 383, 394, 513
DpnII GATC 6 cut(s) 46, 96, 204, 381, 392, 511
Eco130I CCWWGG 1 cut(s) 113
Eco47I GGWCC 2 cut(s) 25, 110
Eco88I CYCGRG 1 cut(s) 225
Eco91I GGTNACC 1 cut(s) 572
EcoO109I RGGNCCY 1 cut(s) 110
EcoO65I GGTNACC 1 cut(s) 572
EcoRI GAATTC 1 cut(s) 612
EcoRII CCWGG 5 cut(s) 99, 207, 370, 541, 568
EcoT14I CCWWGG 1 cut(s) 113
ErhI CCWWGG 1 cut(s) 113
FaeI CATG 1 cut(s) 127
FaiI YATR 6 cut(s) 74, 125, 143, 410, 623, 662
FaqI GGGAC 2 cut(s) 164, 457
FatI CATG 1 cut(s) 123
FbaI TGATCA 2 cut(s) 46, 511
Fnu4HI GCNGC 2 cut(s) 155, 522
FokI GGATG 1 cut(s) 188
Fsp4HI GCNGC 2 cut(s) 155, 522
FspBI CTAG 2 cut(s) 260, 468
GlaI GCGC 1 cut(s) 265
GluI GCNGC 2 cut(s) 155, 522
GsaI CCCAGC 1 cut(s) 276
HaeIII GGCC 3 cut(s) 219, 231, 643
HapII CCGG 3 cut(s) 182, 337, 657
HhaI GCGC 1 cut(s) 266
Hin1II CATG 1 cut(s) 127
Hin6I GCGC 1 cut(s) 264
HinP1I GCGC 1 cut(s) 264
HinfI GANTC 4 cut(s) 295, 333, 433, 464
HpaII CCGG 3 cut(s) 182, 337, 657
HphI GGTGA 4 cut(s) 58, 179, 352, 584
Hpy166II GTNNAC 3 cut(s) 28, 187, 343
Hpy188I TCNGA 4 cut(s) 54, 386, 432, 618
Hpy8I GTNNAC 3 cut(s) 28, 187, 343
HpyAV CCTTC 2 cut(s) 407, 601
HpyCH4III ACNGT 1 cut(s) 508
HpyCH4V TGCA 2 cut(s) 461, 521
HpyF3I CTNAG 2 cut(s) 240, 498
Hsp92II CATG 1 cut(s) 127
HspAI GCGC 1 cut(s) 264
Ksp22I TGATCA 2 cut(s) 46, 511
Kzo9I GATC 6 cut(s) 46, 96, 204, 381, 392, 511
Lsp1109I GCAGC 2 cut(s) 141, 533
LweI GCATC 1 cut(s) 151
MaeI CTAG 2 cut(s) 260, 468
MaeIII GTNAC 2 cut(s) 128, 572
MalI GATC 6 cut(s) 48, 98, 206, 383, 394, 513
MboI GATC 6 cut(s) 46, 96, 204, 381, 392, 511
MboII GAAGA 2 cut(s) 637, 644
MflI RGATCY 2 cut(s) 96, 204
MluCI AATT 2 cut(s) 612, 650
MlyI GAGTC 2 cut(s) 342, 427
MmeI TCCRAC 1 cut(s) 479
MslI CAYNNNNRTG 2 cut(s) 71, 356
MspI CCGG 3 cut(s) 182, 337, 657
MspR9I CCNGG 7 cut(s) 101, 182, 209, 338, 372, 543, 570
MvaI CCWGG 5 cut(s) 101, 209, 372, 543, 570
MvnI CGCG 1 cut(s) 266
NciI CCSGG 2 cut(s) 182, 338
NdeII GATC 6 cut(s) 46, 96, 204, 381, 392, 511
NlaIII CATG 1 cut(s) 127
NlaIV GGNNCC 2 cut(s) 206, 230
NmuCI GTSAC 2 cut(s) 128, 572
PfeI GAWTC 2 cut(s) 295, 464
PfoI TCCNGGA 2 cut(s) 99, 541
PkrI GCNGC 2 cut(s) 156, 523
PleI GAGTC 2 cut(s) 341, 427
PpsI GAGTC 2 cut(s) 341, 427
PpuMI RGGWCCY 1 cut(s) 110
PshAI GACNNNNGTC 1 cut(s) 108
Psp5II RGGWCCY 1 cut(s) 110
Psp6I CCWGG 5 cut(s) 99, 207, 370, 541, 568
PspEI GGTNACC 1 cut(s) 572
PspFI CCCAGC 1 cut(s) 272
PspGI CCWGG 5 cut(s) 99, 207, 370, 541, 568
PspN4I GGNNCC 2 cut(s) 206, 230
PspPI GGNCC 3 cut(s) 25, 110, 229
PspPPI RGGWCCY 1 cut(s) 110
PstI CTGCAG 1 cut(s) 463
PstNI CAGNNNCTG 1 cut(s) 100
PsuI RGATCY 2 cut(s) 96, 204
RseI CAYNNNNRTG 2 cut(s) 71, 356
SatI GCNGC 2 cut(s) 155, 522
Sau3AI GATC 6 cut(s) 46, 96, 204, 381, 392, 511
Sau96I GGNCC 3 cut(s) 25, 110, 229
SchI GAGTC 2 cut(s) 342, 427
ScrFI CCNGG 7 cut(s) 101, 182, 209, 338, 372, 543, 570
SetI ASST 8 cut(s) 27, 40, 112, 192, 226, 391, 520, 574
SfaNI GCATC 1 cut(s) 151
SfcI CTRYAG 3 cut(s) 438, 459, 504
SinI GGWCC 2 cut(s) 25, 110
SmiMI CAYNNNNRTG 2 cut(s) 71, 356
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 2 cut(s) 612, 650
SsiI CCGC 1 cut(s) 266
SspI AATATT 1 cut(s) 682
SspMI CTAG 2 cut(s) 260, 468
StyD4I CCNGG 7 cut(s) 99, 180, 207, 336, 370, 541, 568
StyI CCWWGG 1 cut(s) 113
TaaI ACNGT 1 cut(s) 508
TaqII GACCGA 1 cut(s) 109
TasI AATT 2 cut(s) 612, 650
TfiI GAWTC 2 cut(s) 295, 464
TseFI GTSAC 2 cut(s) 128, 572
TseI GCWGC 2 cut(s) 154, 521
Tsp45I GTSAC 2 cut(s) 128, 572
TspDTI ATGAA 1 cut(s) 638
VpaK11BI GGWCC 2 cut(s) 25, 110
XapI RAATTY 1 cut(s) 612
XspI CTAG 2 cut(s) 260, 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.