Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 74 - 101 | 1.4e-06 | Zinc knuckle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 195 |
| AccI | GTMKAC | 1 cut(s) | 228 |
| AclWI | GGATC | 1 cut(s) | 369 |
| AcoI | YGGCCR | 1 cut(s) | 513 |
| AcsI | RAATTY | 1 cut(s) | 43 |
| AcyI | GRCGYC | 1 cut(s) | 123 |
| AfaI | GTAC | 1 cut(s) | 485 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 329, 561 |
| AflIII | ACRYGT | 1 cut(s) | 452 |
| AgsI | TTSAA | 2 cut(s) | 49, 205 |
| AjnI | CCWGG | 3 cut(s) | 378, 397, 554 |
| AluBI | AGCT | 2 cut(s) | 391, 500 |
| AluI | AGCT | 2 cut(s) | 391, 500 |
| Alw26I | GTCTC | 1 cut(s) | 520 |
| AlwI | GGATC | 1 cut(s) | 369 |
| AoxI | GGCC | 4 cut(s) | 28, 492, 513, 563 |
| ApeKI | GCWGC | 1 cut(s) | 500 |
| ApoI | RAATTY | 1 cut(s) | 43 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 209 |
| AspS9I | GGNCC | 3 cut(s) | 16, 493, 564 |
| AvaII | GGWCC | 1 cut(s) | 16 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 439, 472 |
| BalI | TGGCCA | 1 cut(s) | 515 |
| BanI | GGYRCC | 1 cut(s) | 195 |
| BbvI | GCAGC | 1 cut(s) | 487 |
| BciT130I | CCWGG | 3 cut(s) | 380, 399, 556 |
| BciVI | GTATCC | 1 cut(s) | 286 |
| BcoDI | GTCTC | 1 cut(s) | 520 |
| BfaI | CTAG | 2 cut(s) | 278, 497 |
| BfmI | CTRYAG | 1 cut(s) | 501 |
| BfuI | GTATCC | 1 cut(s) | 286 |
| BisI | GCNGC | 1 cut(s) | 501 |
| BlsI | GCNGC | 1 cut(s) | 502 |
| Bme1390I | CCNGG | 3 cut(s) | 380, 399, 556 |
| Bme18I | GGWCC | 1 cut(s) | 16 |
| BmgT120I | GGNCC | 3 cut(s) | 16, 493, 564 |
| BmiI | GGNNCC | 4 cut(s) | 17, 197, 336, 566 |
| BmrFI | CCNGG | 3 cut(s) | 380, 399, 556 |
| BmrI | ACTGGG | 1 cut(s) | 195 |
| BmuI | ACTGGG | 1 cut(s) | 195 |
| BsaHI | GRCGYC | 1 cut(s) | 123 |
| BsaJI | CCNNGG | 4 cut(s) | 378, 510, 554, 555 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 329, 561 |
| Bse1I | ACTGG | 1 cut(s) | 190 |
| BseBI | CCWGG | 3 cut(s) | 380, 399, 556 |
| BseDI | CCNNGG | 4 cut(s) | 378, 510, 554, 555 |
| BseGI | GGATG | 1 cut(s) | 369 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 329, 561 |
| BseMII | CTCAG | 2 cut(s) | 69, 157 |
| BseNI | ACTGG | 1 cut(s) | 190 |
| BseXI | GCAGC | 1 cut(s) | 487 |
| BshFI | GGCC | 4 cut(s) | 30, 494, 515, 565 |
| BshNI | GGYRCC | 1 cut(s) | 195 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 329, 561 |
| BsmAI | GTCTC | 1 cut(s) | 520 |
| BsmI | GAATGC | 1 cut(s) | 64 |
| BsnI | GGCC | 4 cut(s) | 30, 494, 515, 565 |
| Bsp1407I | TGTACA | 1 cut(s) | 483 |
| Bsp143I | GATC | 1 cut(s) | 374 |
| Bsp19I | CCATGG | 1 cut(s) | 510 |
| BspANI | GGCC | 4 cut(s) | 30, 494, 515, 565 |
| BspCNI | CTCAG | 2 cut(s) | 70, 156 |
| BspLI | GGNNCC | 4 cut(s) | 17, 197, 336, 566 |
| BspMAI | CTGCAG | 1 cut(s) | 505 |
| BspPI | GGATC | 1 cut(s) | 369 |
| BspT107I | GGYRCC | 1 cut(s) | 195 |
| BsrGI | TGTACA | 1 cut(s) | 483 |
| BsrI | ACTGG | 1 cut(s) | 190 |
| BssECI | CCNNGG | 4 cut(s) | 378, 510, 554, 555 |
| BssMI | GATC | 1 cut(s) | 374 |
| BssNI | GRCGYC | 1 cut(s) | 123 |
| BssT1I | CCWWGG | 1 cut(s) | 510 |
| Bst2UI | CCWGG | 3 cut(s) | 380, 399, 556 |
| Bst4CI | ACNGT | 2 cut(s) | 91, 476 |
| Bst6I | CTCTTC | 1 cut(s) | 362 |
| BstACI | GRCGYC | 1 cut(s) | 123 |
| BstAUI | TGTACA | 1 cut(s) | 483 |
| BstDEI | CTNAG | 2 cut(s) | 78, 143 |
| BstDSI | CCRYGG | 1 cut(s) | 510 |
| BstF5I | GGATG | 1 cut(s) | 369 |
| BstKTI | GATC | 1 cut(s) | 377 |
| BstMAI | GTCTC | 1 cut(s) | 520 |
| BstMBI | GATC | 1 cut(s) | 374 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 500 |
| BstNI | CCWGG | 3 cut(s) | 380, 399, 556 |
| BstNSI | RCATGY | 2 cut(s) | 300, 456 |
| BstSCI | CCNGG | 3 cut(s) | 378, 397, 554 |
| BstSFI | CTRYAG | 1 cut(s) | 501 |
| BstV1I | GCAGC | 1 cut(s) | 487 |
| BstX2I | RGATCY | 1 cut(s) | 374 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 26 |
| BstYI | RGATCY | 1 cut(s) | 374 |
| BsuI | GTATCC | 1 cut(s) | 286 |
| BsuRI | GGCC | 4 cut(s) | 30, 494, 515, 565 |
| BtgI | CCRYGG | 1 cut(s) | 510 |
| BtsCI | GGATG | 1 cut(s) | 369 |
| BtsIMutI | CAGTG | 1 cut(s) | 472 |
| Cfr13I | GGNCC | 3 cut(s) | 16, 493, 564 |
| CseI | GACGC | 1 cut(s) | 131 |
| Csp6I | GTAC | 1 cut(s) | 484 |
| CviAII | CATG | 4 cut(s) | 297, 453, 511, 570 |
| CviQI | GTAC | 1 cut(s) | 484 |
| DdeI | CTNAG | 2 cut(s) | 78, 143 |
| DpnI | GATC | 1 cut(s) | 376 |
| DpnII | GATC | 1 cut(s) | 374 |
| EaeI | YGGCCR | 1 cut(s) | 513 |
| Eam1104I | CTCTTC | 1 cut(s) | 362 |
| EarI | CTCTTC | 1 cut(s) | 362 |
| Eco130I | CCWWGG | 1 cut(s) | 510 |
| Eco47I | GGWCC | 1 cut(s) | 16 |
| EcoRII | CCWGG | 3 cut(s) | 378, 397, 554 |
| EcoT14I | CCWWGG | 1 cut(s) | 510 |
| ErhI | CCWWGG | 1 cut(s) | 510 |
| FaeI | CATG | 4 cut(s) | 300, 456, 514, 573 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 144, 176 |
| FatI | CATG | 4 cut(s) | 296, 452, 510, 569 |
| FauNDI | CATATG | 1 cut(s) | 288 |
| FblI | GTMKAC | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 1 cut(s) | 501 |
| FokI | GGATG | 1 cut(s) | 376 |
| Fsp4HI | GCNGC | 1 cut(s) | 501 |
| FspBI | CTAG | 2 cut(s) | 278, 497 |
| GluI | GCNGC | 1 cut(s) | 501 |
| HaeIII | GGCC | 4 cut(s) | 30, 494, 515, 565 |
| HgaI | GACGC | 1 cut(s) | 131 |
| Hin1I | GRCGYC | 1 cut(s) | 123 |
| Hin1II | CATG | 4 cut(s) | 300, 456, 514, 573 |
| HincII | GTYRAC | 1 cut(s) | 121 |
| HindII | GTYRAC | 1 cut(s) | 121 |
| HinfI | GANTC | 3 cut(s) | 164, 312, 464 |
| Hpy166II | GTNNAC | 5 cut(s) | 19, 121, 213, 229, 484 |
| Hpy188III | TCNNGA | 3 cut(s) | 34, 95, 168 |
| Hpy8I | GTNNAC | 5 cut(s) | 19, 121, 213, 229, 484 |
| Hpy99I | CGWCG | 1 cut(s) | 537 |
| HpyAV | CCTTC | 2 cut(s) | 140, 236 |
| HpyCH4III | ACNGT | 2 cut(s) | 91, 476 |
| HpyCH4V | TGCA | 2 cut(s) | 300, 503 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 500 |
| HpyF3I | CTNAG | 2 cut(s) | 78, 143 |
| Hsp92I | GRCGYC | 1 cut(s) | 123 |
| Hsp92II | CATG | 4 cut(s) | 300, 456, 514, 573 |
| Kzo9I | GATC | 1 cut(s) | 374 |
| LmnI | GCTCC | 1 cut(s) | 334 |
| Lsp1109I | GCAGC | 1 cut(s) | 487 |
| MaeI | CTAG | 2 cut(s) | 278, 497 |
| MalI | GATC | 1 cut(s) | 376 |
| MboI | GATC | 1 cut(s) | 374 |
| MboII | GAAGA | 4 cut(s) | 116, 352, 379, 384 |
| MflI | RGATCY | 1 cut(s) | 374 |
| MlsI | TGGCCA | 1 cut(s) | 515 |
| MluCI | AATT | 2 cut(s) | 43, 304 |
| MluNI | TGGCCA | 1 cut(s) | 515 |
| MlyI | GAGTC | 1 cut(s) | 473 |
| MnlI | CCTC | 3 cut(s) | 41, 410, 422 |
| Mox20I | TGGCCA | 1 cut(s) | 515 |
| MroXI | GAANNNNTTC | 1 cut(s) | 209 |
| MscI | TGGCCA | 1 cut(s) | 515 |
| MseI | TTAA | 1 cut(s) | 318 |
| MslI | CAYNNNNRTG | 1 cut(s) | 521 |
| Msp20I | TGGCCA | 1 cut(s) | 515 |
| MspR9I | CCNGG | 3 cut(s) | 380, 399, 556 |
| Mva1269I | GAATGC | 1 cut(s) | 64 |
| MvaI | CCWGG | 3 cut(s) | 380, 399, 556 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 500 |
| NcoI | CCATGG | 1 cut(s) | 510 |
| NdeI | CATATG | 1 cut(s) | 288 |
| NdeII | GATC | 1 cut(s) | 374 |
| NlaIII | CATG | 4 cut(s) | 300, 456, 514, 573 |
| NlaIV | GGNNCC | 4 cut(s) | 17, 197, 336, 566 |
| NmeAIII | GCCGAG | 1 cut(s) | 88 |
| NspI | RCATGY | 2 cut(s) | 300, 456 |
| PasI | CCCWGGG | 1 cut(s) | 555 |
| PciI | ACATGT | 1 cut(s) | 452 |
| PctI | GAATGC | 1 cut(s) | 64 |
| PdmI | GAANNNNTTC | 1 cut(s) | 209 |
| PfeI | GAWTC | 2 cut(s) | 164, 312 |
| PflFI | GACNNNGTC | 1 cut(s) | 531 |
| PkrI | GCNGC | 1 cut(s) | 502 |
| PleI | GAGTC | 1 cut(s) | 472 |
| PpsI | GAGTC | 1 cut(s) | 472 |
| PscI | ACATGT | 1 cut(s) | 452 |
| Psp6I | CCWGG | 3 cut(s) | 378, 397, 554 |
| PspGI | CCWGG | 3 cut(s) | 378, 397, 554 |
| PspN4I | GGNNCC | 4 cut(s) | 17, 197, 336, 566 |
| PspPI | GGNCC | 3 cut(s) | 16, 493, 564 |
| PstI | CTGCAG | 1 cut(s) | 505 |
| PsuI | RGATCY | 1 cut(s) | 374 |
| PsyI | GACNNNGTC | 1 cut(s) | 531 |
| RsaI | GTAC | 1 cut(s) | 485 |
| RsaNI | GTAC | 1 cut(s) | 484 |
| RseI | CAYNNNNRTG | 1 cut(s) | 521 |
| SaqAI | TTAA | 1 cut(s) | 318 |
| SatI | GCNGC | 1 cut(s) | 501 |
| Sau3AI | GATC | 1 cut(s) | 374 |
| Sau96I | GGNCC | 3 cut(s) | 16, 493, 564 |
| SchI | GAGTC | 1 cut(s) | 473 |
| ScrFI | CCNGG | 3 cut(s) | 380, 399, 556 |
| SetI | ASST | 3 cut(s) | 283, 393, 502 |
| SfcI | CTRYAG | 1 cut(s) | 501 |
| SinI | GGWCC | 1 cut(s) | 16 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 521 |
| Sse9I | AATT | 2 cut(s) | 43, 304 |
| SspMI | CTAG | 2 cut(s) | 278, 497 |
| StyD4I | CCNGG | 3 cut(s) | 378, 397, 554 |
| StyI | CCWWGG | 1 cut(s) | 510 |
| TaaI | ACNGT | 2 cut(s) | 91, 476 |
| TaqI | TCGA | 1 cut(s) | 535 |
| TasI | AATT | 2 cut(s) | 43, 304 |
| TatI | WGTACW | 1 cut(s) | 483 |
| TfiI | GAWTC | 2 cut(s) | 164, 312 |
| Tru1I | TTAA | 1 cut(s) | 318 |
| Tru9I | TTAA | 1 cut(s) | 318 |
| TscAI | CASTG | 1 cut(s) | 479 |
| TseI | GCWGC | 1 cut(s) | 500 |
| TspDTI | ATGAA | 3 cut(s) | 255, 380, 554 |
| TspRI | CASTG | 1 cut(s) | 479 |
| Tth111I | GACNNNGTC | 1 cut(s) | 531 |
| VpaK11BI | GGWCC | 1 cut(s) | 16 |
| XapI | RAATTY | 1 cut(s) | 43 |
| XceI | RCATGY | 2 cut(s) | 300, 456 |
| XmiI | GTMKAC | 1 cut(s) | 228 |
| XmnI | GAANNNNTTC | 1 cut(s) | 209 |
| XspI | CTAG | 2 cut(s) | 278, 497 |