Rh1DG267000

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000073
Physical Location & Seq
Reverse (-)
48381155 .. 48387742
6588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG267000.1

Sequence Viewer

Length: 1293 bp
ATGGCTTCCTCATCTGGGGACCATGAAGACATCCCTTTTGAGGATGAAGGAATTATTGAAGCGATGTGTGTCAACTTTGAGGAAGCGGCTGACTTCCTGGATTTAGAGCACGGTATTGATCTGTTGGGCATCCTGATAGCTGAAGAGGAACCAGGTCTGGGGGGTATTAAGGCCATTCTTACTGGCATCTGGAAGTCTCTTGGCCAAATAAGGATTATCAGGGCCAAAAAGAATATCTACTGTATCACTGTGGGTTCAGAGAAGTTAGCTAGCAAACTAATCGATGACAGCCCTTGGAATATTAAGGGATACAGCTTTTCTGTTCGCCATTGGCCCCGATACCACTCCATTGATGACATCGAGGCTAATCGTGCTGTGTACTGGATACAAGCCCATGGAGTTCCGAGGGACCAAATATCACTCAACAATGGCAGAAGCCTAGGCAATGTTCTGGGTTCTGTTATTGAGATAGAAGATCCTCAGGTAGTTGGTAATCGTGGATTCCTCAGGATGAGGGTTGATTTCGATGCCAGTAAACCTTTGGCAACCTTTGTCAGGCTGCCTAGAAAAGGAGCTGTCCACACAAAAATCCGATTGCAATACGAAAATTTGAAGAACTTCTGTTTCAACTGTGGTAGGCTCGGCCATATGCTCTCTTCCTGTAGACACAGGAAACACCCTCTTCTGGTCCAACTGGGGGTAGTTTATGACTCTTCTTTGGTGGCTCAACCTCCTCCAAAGCCAATTTACACCCAGGAGTCCTACCCTCTTGAATTCCCATATGCTCCGACGACCGGAATCTTTGGTCGGGGCTCAACCCAGGCAAATTCAAATTCTAGGAAACTGGTTCCTTCAGATAGGGACAGGTCCTCCTACTCACATGGCTCTGATGGTGGTGCAGATAAAGCCTGTGGGTCTGTCACAAGTGAAAAGGACTGCTCCACGTCCCCTGCAGTGATACCCAAACCAAGATATCCTGGCCATGGACCATGTATGTTTGCCCCAGATGCACATGGGGCTATGTTTCGAAATGGAAGTGTCACACGGGCTTTAGGTGGTCTCACAATACATGGATCCTGGGCCGACCCGGAATGCATTCCCCCCTGGGCCTTCGCTGATAAGAGGGAATATTTCAAAGCCAATCCTTTCTTTCCAGTTCCTATACATGTGGACCCAGTAGATGGGCCAAAGACCTCTCCCAGGCCTTCTTCTGTGGAGATTGTGGAGTTGCCCCCTGCTGTTAAGGGCCCTGAGGAAAAAAGAATAAATCAGCAGGAGAATGCCCCTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_3 zf-CCHC_4

Protein Analysis

430

Amino Acids

47.35

Weight (kDa)

6.71

Isoelectric Point (pI)

40.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 48 - 113 4.8e-07 Domain of unknown function (DUF4283)
zf-CCHC_4 PF14392 175 - 222 1.2e-11 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1181
AccI GTMKAC 1 cut(s) 664
AciI CCGC 1 cut(s) 86
AclWI GGATC 3 cut(s) 470, 1068, 1081
AcoI YGGCCR 3 cut(s) 202, 643, 979
AcsI RAATTY 4 cut(s) 607, 773, 826, 832
AcuI CTGAAG 2 cut(s) 162, 837
AfaI GTAC 1 cut(s) 380
AflIII ACRYGT 1 cut(s) 1165
AgsI TTSAA 6 cut(s) 59, 613, 628, 773, 831, 1135
AjiI CACGTC 1 cut(s) 945
AjnI CCWGG 8 cut(s) 96, 151, 753, 819, 976, 1076, 1103, 1199
AluBI AGCT 4 cut(s) 140, 269, 315, 575
AluI AGCT 4 cut(s) 140, 269, 315, 575
Alw21I GWGCWC 1 cut(s) 111
Alw26I GTCTC 2 cut(s) 201, 1064
AlwI GGATC 3 cut(s) 470, 1068, 1081
ApaI GGGCCC 1 cut(s) 1250
ApeKI GCWGC 1 cut(s) 559
ApoI RAATTY 4 cut(s) 607, 773, 826, 832
ArsI GACNNNNNNTTYG 2 cut(s) 20, 52
Asp700I GAANNNNTTC 2 cut(s) 617, 1095
AspA2I CCTAGG 1 cut(s) 439
AsuC2I CCSGG 1 cut(s) 1088
AsuII TTCGAA 1 cut(s) 1027
AsuNHI GCTAGC 1 cut(s) 269
AvaII GGWCC 6 cut(s) 19, 409, 688, 867, 986, 1171
AvrII CCTAGG 1 cut(s) 439
AxyI CCTNAGG 3 cut(s) 480, 506, 1251
BaeGI GKGCMC 1 cut(s) 1250
BalI TGGCCA 2 cut(s) 204, 981
BamHI GGATCC 1 cut(s) 1073
BanII GRGCYC 2 cut(s) 815, 1250
BbsI GAAGAC 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 111
BbvI GCAGC 1 cut(s) 546
BccI CCATC 2 cut(s) 884, 1175
BcgI CGANNNNNNTGC 2 cut(s) 262, 296
BciT130I CCWGG 8 cut(s) 98, 153, 755, 821, 978, 1078, 1105, 1201
BciVI GTATCC 2 cut(s) 302, 378
BcnI CCSGG 1 cut(s) 1088
BcoDI GTCTC 2 cut(s) 201, 1064
BfaI CTAG 4 cut(s) 270, 440, 564, 837
BfmI CTRYAG 2 cut(s) 661, 951
BfuI GTATCC 2 cut(s) 302, 378
BisI GCNGC 2 cut(s) 87, 560
BlnI CCTAGG 1 cut(s) 439
BlsI GCNGC 2 cut(s) 88, 561
Bme1390I CCNGG 9 cut(s) 98, 153, 755, 821, 978, 1078, 1088, 1105, 1201
Bme18I GGWCC 6 cut(s) 19, 409, 688, 867, 986, 1171
BmgBI CACGTC 1 cut(s) 945
BmiI GGNNCC 8 cut(s) 20, 150, 335, 410, 849, 1075, 1173, 1248
BmrFI CCNGG 9 cut(s) 98, 153, 755, 821, 978, 1078, 1088, 1105, 1201
BmrI ACTGGG 2 cut(s) 704, 1169
BmsI GCATC 4 cut(s) 138, 195, 517, 997
BmtI GCTAGC 1 cut(s) 273
BmuI ACTGGG 2 cut(s) 704, 1169
BpiI GAAGAC 1 cut(s) 33
Bpu14I TTCGAA 1 cut(s) 1027
BpuMI CCSGG 1 cut(s) 1088
Bsa29I ATCGAT 1 cut(s) 282
BsaI GGTCTC 1 cut(s) 1064
BsaWI WCCGGW 1 cut(s) 794
BsaXI ACNNNNNCTCC 2 cut(s) 854, 884
Bse1I ACTGG 7 cut(s) 187, 386, 531, 699, 849, 1154, 1175
Bse21I CCTNAGG 3 cut(s) 480, 506, 1251
Bse3DI GCAATG 1 cut(s) 451
BseBI CCWGG 8 cut(s) 98, 153, 755, 821, 978, 1078, 1105, 1201
BseCI ATCGAT 1 cut(s) 282
BseGI GGATG 4 cut(s) 30, 49, 129, 516
BseMI GCAATG 1 cut(s) 451
BseMII CTCAG 3 cut(s) 494, 520, 1242
BseNI ACTGG 7 cut(s) 187, 386, 531, 699, 849, 1154, 1175
BseRI GAGGAG 1 cut(s) 723
BseSI GKGCMC 1 cut(s) 1250
BseXI GCAGC 1 cut(s) 546
BsgI GTGCAG 1 cut(s) 918
Bsh1285I CGRYCG 1 cut(s) 795
BshVI ATCGAT 1 cut(s) 282
BsiEI CGRYCG 1 cut(s) 795
BsiHKAI GWGCWC 1 cut(s) 111
BsiSI CCGG 2 cut(s) 795, 1088
BslFI GGGAC 4 cut(s) 32, 422, 875, 931
BsmAI GTCTC 2 cut(s) 201, 1064
BsmFI GGGAC 4 cut(s) 32, 422, 875, 931
BsmI GAATGC 3 cut(s) 1095, 1097, 1285
Bso31I GGTCTC 1 cut(s) 1064
Bsp119I TTCGAA 1 cut(s) 1027
Bsp120I GGGCCC 1 cut(s) 1246
Bsp1286I GDGCHC 3 cut(s) 111, 815, 1250
Bsp143I GATC 3 cut(s) 118, 475, 1073
Bsp19I CCATGG 2 cut(s) 394, 982
BspACI CCGC 1 cut(s) 86
BspCNI CTCAG 3 cut(s) 493, 519, 1243
BspDI ATCGAT 1 cut(s) 282
BspLI GGNNCC 8 cut(s) 20, 150, 335, 410, 849, 1075, 1173, 1248
BspMAI CTGCAG 1 cut(s) 955
BspOI GCTAGC 1 cut(s) 273
BspPI GGATC 3 cut(s) 470, 1068, 1081
BspT104I TTCGAA 1 cut(s) 1027
BspTNI GGTCTC 1 cut(s) 1064
BsrDI GCAATG 1 cut(s) 451
BsrI ACTGG 7 cut(s) 187, 386, 531, 699, 849, 1154, 1175
BssMI GATC 3 cut(s) 118, 475, 1073
BssT1I CCWWGG 4 cut(s) 293, 394, 439, 982
Bst2UI CCWGG 8 cut(s) 98, 153, 755, 821, 978, 1078, 1105, 1201
Bst4CI ACNGT 4 cut(s) 113, 242, 250, 632
Bst6I CTCTTC 4 cut(s) 138, 661, 687, 718
BstBI TTCGAA 1 cut(s) 1027
BstC8I GCNNGC 1 cut(s) 271
BstDEI CTNAG 4 cut(s) 480, 506, 1251, 1287
BstDSI CCRYGG 2 cut(s) 394, 982
BstENI CCTNNNNNAGG 3 cut(s) 553, 567, 1198
BstF5I GGATG 4 cut(s) 30, 49, 129, 516
BstKTI GATC 3 cut(s) 121, 478, 1076
BstMAI GTCTC 2 cut(s) 201, 1064
BstMBI GATC 3 cut(s) 118, 475, 1073
BstMCI CGRYCG 1 cut(s) 795
BstMWI GCNNNNNNNGC 4 cut(s) 371, 905, 1007, 1016
BstNI CCWGG 8 cut(s) 98, 153, 755, 821, 978, 1078, 1105, 1201
BstNSI RCATGY 1 cut(s) 1169
BstSCI CCNGG 9 cut(s) 96, 151, 753, 819, 976, 1076, 1086, 1103, 1199
BstSFI CTRYAG 2 cut(s) 661, 951
BstSLI GKGCMC 1 cut(s) 1250
BstV1I GCAGC 1 cut(s) 546
BstV2I GAAGAC 1 cut(s) 33
BstX2I RGATCY 2 cut(s) 475, 1073
BstYI RGATCY 2 cut(s) 475, 1073
Bsu15I ATCGAT 1 cut(s) 282
Bsu36I CCTNAGG 3 cut(s) 480, 506, 1251
BsuI GTATCC 2 cut(s) 302, 378
BsuTUI ATCGAT 1 cut(s) 282
BtgI CCRYGG 2 cut(s) 394, 982
BtgZI GCGATG 1 cut(s) 77
BtrI CACGTC 1 cut(s) 945
BtsCI GGATG 4 cut(s) 30, 49, 129, 516
BtsI GCAGTG 1 cut(s) 960
BtsIMutI CAGTG 2 cut(s) 246, 960
Cac8I GCNNGC 1 cut(s) 271
ClaI ATCGAT 1 cut(s) 282
CsiI ACCWGGT 1 cut(s) 151
Csp6I GTAC 1 cut(s) 379
CviAII CATG 8 cut(s) 23, 395, 881, 983, 990, 1013, 1070, 1166
CviQI GTAC 1 cut(s) 379
DdeI CTNAG 4 cut(s) 480, 506, 1251, 1287
DpnI GATC 3 cut(s) 120, 477, 1075
DpnII GATC 3 cut(s) 118, 475, 1073
EaeI YGGCCR 3 cut(s) 202, 643, 979
Eam1104I CTCTTC 4 cut(s) 138, 661, 687, 718
EarI CTCTTC 4 cut(s) 138, 661, 687, 718
Eco130I CCWWGG 4 cut(s) 293, 394, 439, 982
Eco147I AGGCCT 1 cut(s) 1204
Eco24I GRGCYC 2 cut(s) 815, 1250
Eco31I GGTCTC 1 cut(s) 1064
Eco32I GATATC 1 cut(s) 974
Eco47I GGWCC 6 cut(s) 19, 409, 688, 867, 986, 1171
Eco57I CTGAAG 2 cut(s) 162, 837
Eco81I CCTNAGG 3 cut(s) 480, 506, 1251
EcoNI CCTNNNNNAGG 3 cut(s) 553, 567, 1198
EcoO109I RGGNCCY 3 cut(s) 867, 1246, 1247
EcoRI GAATTC 1 cut(s) 773
EcoRII CCWGG 8 cut(s) 96, 151, 753, 819, 976, 1076, 1103, 1199
EcoRV GATATC 1 cut(s) 974
EcoT14I CCWWGG 4 cut(s) 293, 394, 439, 982
EcoT22I ATGCAT 1 cut(s) 1097
EcoT38I GRGCYC 2 cut(s) 815, 1250
ErhI CCWWGG 4 cut(s) 293, 394, 439, 982
FaeI CATG 8 cut(s) 26, 398, 884, 986, 993, 1016, 1073, 1169
FaqI GGGAC 4 cut(s) 32, 422, 875, 931
FatI CATG 8 cut(s) 22, 394, 880, 982, 989, 1012, 1069, 1165
FauNDI CATATG 2 cut(s) 648, 781
FblI GTMKAC 1 cut(s) 664
Fnu4HI GCNGC 2 cut(s) 87, 560
FokI GGATG 4 cut(s) 17, 56, 116, 523
FriOI GRGCYC 2 cut(s) 815, 1250
Fsp4HI GCNGC 2 cut(s) 87, 560
FspBI CTAG 4 cut(s) 270, 440, 564, 837
GluI GCNGC 2 cut(s) 87, 560
HapII CCGG 2 cut(s) 795, 1088
Hin1II CATG 8 cut(s) 26, 398, 884, 986, 993, 1016, 1073, 1169
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HinfI GANTC 4 cut(s) 501, 710, 758, 798
HpaII CCGG 2 cut(s) 795, 1088
Hpy166II GTNNAC 6 cut(s) 73, 379, 536, 580, 665, 1171
Hpy188I TCNGA 6 cut(s) 259, 405, 593, 789, 856, 889
Hpy188III TCNNGA 4 cut(s) 133, 190, 508, 770
Hpy8I GTNNAC 6 cut(s) 73, 379, 536, 580, 665, 1171
Hpy99I CGWCG 1 cut(s) 793
HpyAV CCTTC 4 cut(s) 41, 861, 1120, 1215
HpyCH4III ACNGT 4 cut(s) 113, 242, 250, 632
HpyCH4IV ACGT 1 cut(s) 944
HpyCH4V TGCA 5 cut(s) 598, 899, 953, 1010, 1095
HpyF10VI GCNNNNNNNGC 4 cut(s) 371, 905, 1007, 1016
HpyF3I CTNAG 4 cut(s) 480, 506, 1251, 1287
HpySE526I ACGT 1 cut(s) 944
Hsp92II CATG 8 cut(s) 26, 398, 884, 986, 993, 1016, 1073, 1169
Kzo9I GATC 3 cut(s) 118, 475, 1073
LmnI GCTCC 3 cut(s) 572, 790, 944
Lsp1109I GCAGC 1 cut(s) 546
LweI GCATC 4 cut(s) 138, 195, 517, 997
MabI ACCWGGT 1 cut(s) 151
MaeI CTAG 4 cut(s) 270, 440, 564, 837
MaeII ACGT 1 cut(s) 944
MaeIII GTNAC 2 cut(s) 919, 1039
MalI GATC 3 cut(s) 120, 477, 1075
MboI GATC 3 cut(s) 118, 475, 1073
MboII GAAGA 8 cut(s) 38, 155, 485, 625, 648, 674, 705, 1200
MflI RGATCY 2 cut(s) 475, 1073
MhlI GDGCHC 3 cut(s) 111, 815, 1250
MlsI TGGCCA 2 cut(s) 204, 981
MluCI AATT 6 cut(s) 51, 607, 744, 773, 826, 832
MluNI TGGCCA 2 cut(s) 204, 981
MlyI GAGTC 2 cut(s) 704, 767
MmeI TCCRAC 2 cut(s) 715, 812
Mox20I TGGCCA 2 cut(s) 204, 981
Mph1103I ATGCAT 1 cut(s) 1097
MroXI GAANNNNTTC 2 cut(s) 617, 1095
MscI TGGCCA 2 cut(s) 204, 981
MseI TTAA 3 cut(s) 168, 303, 1242
Msp20I TGGCCA 2 cut(s) 204, 981
MspI CCGG 2 cut(s) 795, 1088
MspR9I CCNGG 9 cut(s) 98, 153, 755, 821, 978, 1078, 1088, 1105, 1201
Mva1269I GAATGC 3 cut(s) 1095, 1097, 1285
MvaI CCWGG 8 cut(s) 98, 153, 755, 821, 978, 1078, 1105, 1201
MwoI GCNNNNNNNGC 4 cut(s) 371, 905, 1007, 1016
NciI CCSGG 1 cut(s) 1088
NcoI CCATGG 2 cut(s) 394, 982
NdeI CATATG 2 cut(s) 648, 781
NdeII GATC 3 cut(s) 118, 475, 1073
NheI GCTAGC 1 cut(s) 269
NlaIII CATG 8 cut(s) 26, 398, 884, 986, 993, 1016, 1073, 1169
NlaIV GGNNCC 8 cut(s) 20, 150, 335, 410, 849, 1075, 1173, 1248
NmeAIII GCCGAG 1 cut(s) 621
NmuCI GTSAC 2 cut(s) 919, 1039
NsiI ATGCAT 1 cut(s) 1097
NspI RCATGY 1 cut(s) 1169
NspV TTCGAA 1 cut(s) 1027
PasI CCCWGGG 1 cut(s) 1104
PceI AGGCCT 1 cut(s) 1204
PciI ACATGT 1 cut(s) 1165
PctI GAATGC 3 cut(s) 1095, 1097, 1285
PdmI GAANNNNTTC 2 cut(s) 617, 1095
PfeI GAWTC 2 cut(s) 501, 798
PflMI CCANNNNNTGG 1 cut(s) 1181
PfoI TCCNGGA 1 cut(s) 96
PkrI GCNGC 2 cut(s) 88, 561
PleI GAGTC 2 cut(s) 704, 766
PpsI GAGTC 2 cut(s) 704, 766
PpuMI RGGWCCY 1 cut(s) 867
PscI ACATGT 1 cut(s) 1165
Psp5II RGGWCCY 1 cut(s) 867
Psp6I CCWGG 8 cut(s) 96, 151, 753, 819, 976, 1076, 1103, 1199
PspGI CCWGG 8 cut(s) 96, 151, 753, 819, 976, 1076, 1103, 1199
PspN4I GGNNCC 8 cut(s) 20, 150, 335, 410, 849, 1075, 1173, 1248
PspOMI GGGCCC 1 cut(s) 1246
PspPPI RGGWCCY 1 cut(s) 867
PstI CTGCAG 1 cut(s) 955
PsuI RGATCY 2 cut(s) 475, 1073
RsaI GTAC 1 cut(s) 380
RsaNI GTAC 1 cut(s) 379
SaqAI TTAA 3 cut(s) 168, 303, 1242
SatI GCNGC 2 cut(s) 87, 560
Sau3AI GATC 3 cut(s) 118, 475, 1073
SchI GAGTC 2 cut(s) 704, 767
ScrFI CCNGG 9 cut(s) 98, 153, 755, 821, 978, 1078, 1088, 1105, 1201
SduI GDGCHC 3 cut(s) 111, 815, 1250
SexAI ACCWGGT 1 cut(s) 151
SfaNI GCATC 4 cut(s) 138, 195, 517, 997
SfcI CTRYAG 2 cut(s) 661, 951
SfuI TTCGAA 1 cut(s) 1027
SinI GGWCC 6 cut(s) 19, 409, 688, 867, 986, 1171
Sse9I AATT 6 cut(s) 51, 607, 744, 773, 826, 832
SseBI AGGCCT 1 cut(s) 1204
SsiI CCGC 1 cut(s) 86
SspI AATATT 2 cut(s) 301, 1130
SspMI CTAG 4 cut(s) 270, 440, 564, 837
StuI AGGCCT 1 cut(s) 1204
StyD4I CCNGG 9 cut(s) 96, 151, 753, 819, 976, 1076, 1086, 1103, 1199
StyI CCWWGG 4 cut(s) 293, 394, 439, 982
TaaI ACNGT 4 cut(s) 113, 242, 250, 632
TaiI ACGT 1 cut(s) 947
TaqI TCGA 4 cut(s) 282, 360, 525, 1027
TasI AATT 6 cut(s) 51, 607, 744, 773, 826, 832
TatI WGTACW 1 cut(s) 378
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 2 cut(s) 501, 798
Tru1I TTAA 3 cut(s) 168, 303, 1242
Tru9I TTAA 3 cut(s) 168, 303, 1242
TscAI CASTG 2 cut(s) 253, 960
TseFI GTSAC 2 cut(s) 919, 1039
TseI GCWGC 1 cut(s) 559
Tsp45I GTSAC 2 cut(s) 919, 1039
TspDTI ATGAA 2 cut(s) 39, 60
TspRI CASTG 2 cut(s) 253, 960
Van91I CCANNNNNTGG 1 cut(s) 1181
VpaK11BI GGWCC 6 cut(s) 19, 409, 688, 867, 986, 1171
XagI CCTNNNNNAGG 3 cut(s) 553, 567, 1198
XapI RAATTY 4 cut(s) 607, 773, 826, 832
XceI RCATGY 1 cut(s) 1169
XcmI CCANNNNNNNNNTGG 1 cut(s) 538
XmaJI CCTAGG 1 cut(s) 439
XmiI GTMKAC 1 cut(s) 664
XmnI GAANNNNTTC 2 cut(s) 617, 1095
XspI CTAG 4 cut(s) 270, 440, 564, 837
Zsp2I ATGCAT 1 cut(s) 1097
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.