Rh1DG138100

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000073
Physical Location & Seq
Forward (+)
29042402 .. 29139793
97392 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG138100.1

Sequence Viewer

Length: 1803 bp
ATGGGGAAACCAACCCCAAGACGCTACAAAATCTCACTTAAGGAACCTCATCGCATCCAGATCTCTGAAGCTTTGTTATTGTTCCTACTTCTCATTCTAGCTCAGACAGATAGTTCATTTCCTACTCCCTACTTAACTGAGATGGAAGAAGCACATAAATCTCCTGATAACCTAGTTGTGCAGATGAGGAGGAAATTATCATTATATGATCTGGACAGAAAGGTTAGATTGAGTGCTGTTATCTTTGCTGACAAGATCCCAAACAAGGTAACTATTTGTAACACTATGAGAACTGTTCTAGCAAGGTTTGGTACTACAGGGGTGACTGCTAGCAATGAAAGGGATCCAAACGACAGGATGTTCTCTGTTACTGCAGAGGATGTTGATTCTGCTAAGGCTATTCTAGACGGTTCCCCATGGTCAATTTTGAGATTCTCTGTACATTTCCAAGAATGGCCTGAGACTCTTGCTATTGAGGAACTTCAGTGCAATCAGATAGCCTTCTGGGTGCAAGTCAGGGGTGTTCCACCCTATATGTTTGATGTGGAAAATGTTAGGGAGATGATTGATCATTTTGGAGAGTTCATCAAGATGGACGACCCCCTGGAAAGTGAAGAAGGCACCTATAGTTTTCTCCGAGTCAGAGTCCTTCTTGATGCTCGGGATCCTCTTCCTACAGGCTATGAGCTTCCAAGAGAGGATGGAACCAAGAAATGGGTTAGTTTTGCTTTCGAGAAATTGTCTGATTTTTGCTATGTCTGTGGGAGATTAGGACATACAGATTTACCAAAAGCTCCATGCCCCCATGGAGTTGATCCAGAGAATGAAAATGAGTATGGTGATTGGCTTCGTGCATTACCACCTCGAAAGCAAATCAGGAATGAAAATCCACAGACCAAGACGGCAAGTGGTCGGAATAGAAGGAGGTTTCCCGGCCAAACTATCCAACCTATGGAAAGCAGTGACAACGGCCAAAATTCACAACCCCAACGAGCCTCCCCAAGTCACATCAATGAACTTCACATACAGCATTCAGCCCCCTCTGTCAGAATACAATTTCCTGACACAAGTGCCCATGCCGCTGTTGTCAACCAATGTGAAAGCAACTACACAAAGGCTCTGCCAAGGGAACTTTCAAGGTACCCCACTACCCCAATTGTACCAAACCTTAATAATATTTCCATGCCCTCCCCTCCACCTGGATTTGATCCCCTACCAAACAGTGTCTCAAGGACCATTTTCCTAGAACAAACTCAAAATGTGACAAATAGGAGCGGTTTTGGCTACCCATGGTTTTTTAATCAGGGTAACAACTCTGGTAATGTAAATACAATATACTATGGCACACTGGTCAAGTCTCTATCAGCAAACATAACAACTGCAACTCGACCCACTTGGGCTCCTGCAAAAGATGGTAATGAACAAGTGGCCTTCATCTCTGTTCGACTGAAGCCCCTCAGTTTGATTCAGAGTTTTCATGCAGATCGAGAAGAAAGAGATCCAAGATTTCAGAACCAACCATCTATTCGAATGAAGTTTACAAAAGAGCCCATGTCTAATTCCAAGAAGTTCCACATGAATTTCAGGGAGGCGGCTAGAATATGCAAGTTGCAACTTACAACCTCTAACGGCGTCAAATTTTATGATAAGTCTGAAATACCCAGTAAACACTTAACACTTCACAGCTCTTTCATAAACAACTGCAGAAGAGTAGGAACTGCAGCTGGACAGAACACCAGCGTCCAGATCACAGGCCTCGCCGAACTTATACTCAGACCGTTAGAAGTAAGCCATGGCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

600

Amino Acids

68.0

Weight (kDa)

8.74

Isoelectric Point (pI)

39.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 218 - 261 7.4e-09 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1140
AccB1I GGYRCC 2 cut(s) 620, 1140
AccB7I CCANNNNNTGG 2 cut(s) 714, 952
AccBSI CCGCTC 1 cut(s) 1275
AciI CCGC 3 cut(s) 1080, 1275, 1592
AclWI GGATC 8 cut(s) 250, 338, 351, 659, 672, 809, 1202, 1493
AcoI YGGCCR 2 cut(s) 934, 970
AcsI RAATTY 3 cut(s) 976, 1579, 1637
AcuI CTGAAG 3 cut(s) 87, 467, 1469
AcyI GRCGYC 1 cut(s) 1632
AfaI GTAC 4 cut(s) 313, 441, 1142, 1161
AfiI CCNNNNNNNGG 4 cut(s) 265, 714, 952, 1199
AflII CTTAAG 1 cut(s) 38
AgsI TTSAA 1 cut(s) 1137
AjnI CCWGG 2 cut(s) 603, 1198
AjuI GAANNNNNNNTTGG 4 cut(s) 1117, 1149, 1509, 1541
AluBI AGCT 6 cut(s) 71, 101, 688, 794, 1686, 1724
AluI AGCT 6 cut(s) 71, 101, 688, 794, 1686, 1724
Alw26I GTCTC 3 cut(s) 455, 1231, 1362
AlwI GGATC 8 cut(s) 250, 338, 351, 659, 672, 809, 1202, 1493
Ama87I CYCGRG 1 cut(s) 660
AoxI GGCC 5 cut(s) 455, 934, 970, 1428, 1753
ApeKI GCWGC 1 cut(s) 1721
ApoI RAATTY 3 cut(s) 976, 1579, 1637
Asp718I GGTACC 1 cut(s) 1140
AspS9I GGNCC 1 cut(s) 1233
AsuC2I CCSGG 1 cut(s) 933
AsuHPI GGTGA 2 cut(s) 334, 851
AsuII TTCGAA 1 cut(s) 1528
AsuNHI GCTAGC 1 cut(s) 329
AvaI CYCGRG 1 cut(s) 660
AvaII GGWCC 1 cut(s) 1233
BaeGI GKGCMC 1 cut(s) 1075
BamHI GGATCC 2 cut(s) 343, 664
BanI GGYRCC 2 cut(s) 620, 1140
BanII GRGCYC 2 cut(s) 1402, 1551
BbvI GCAGC 1 cut(s) 1733
BccI CCATC 5 cut(s) 136, 586, 695, 1406, 1528
BceAI ACGGC 3 cut(s) 918, 985, 1645
BciT130I CCWGG 2 cut(s) 605, 1200
BclI TGATCA 1 cut(s) 568
BcnI CCSGG 1 cut(s) 933
BcoDI GTCTC 3 cut(s) 455, 1231, 1362
BfaI CTAG 7 cut(s) 98, 173, 299, 330, 404, 1244, 1596
BfmI CTRYAG 6 cut(s) 315, 372, 625, 675, 1702, 1719
BfrI CTTAAG 1 cut(s) 38
BglII AGATCT 1 cut(s) 60
BisI GCNGC 3 cut(s) 1080, 1593, 1722
BlsI GCNGC 3 cut(s) 1081, 1594, 1723
Bme1390I CCNGG 3 cut(s) 605, 933, 1200
Bme18I GGWCC 1 cut(s) 1233
BmeT110I CYCGRG 1 cut(s) 660
BmgT120I GGNCC 1 cut(s) 1233
BmiI GGNNCC 8 cut(s) 45, 345, 412, 622, 666, 706, 1142, 1401
BmrFI CCNGG 3 cut(s) 605, 933, 1200
BmrI ACTGGG 1 cut(s) 1656
BmsI GCATC 2 cut(s) 63, 646
BmtI GCTAGC 1 cut(s) 333
BmuI ACTGGG 1 cut(s) 1656
Bpu10I CCTNAGC 1 cut(s) 393
Bpu14I TTCGAA 1 cut(s) 1528
BpuEI CTTGAG 1 cut(s) 1213
BpuMI CCSGG 1 cut(s) 933
BsaHI GRCGYC 1 cut(s) 1632
BsaJI CCNNGG 6 cut(s) 416, 603, 805, 1124, 1289, 1792
BsaXI ACNNNNNCTCC 2 cut(s) 1384, 1414
Bsc4I CCNNNNNNNGG 4 cut(s) 265, 714, 952, 1199
Bse1I ACTGG 2 cut(s) 1353, 1662
Bse3DI GCAATG 1 cut(s) 340
BseBI CCWGG 2 cut(s) 605, 1200
BseDI CCNNGG 6 cut(s) 416, 603, 805, 1124, 1289, 1792
BseGI GGATG 4 cut(s) 54, 363, 385, 706
BseLI CCNNNNNNNGG 4 cut(s) 265, 714, 952, 1199
BseMI GCAATG 1 cut(s) 340
BseMII CTCAG 5 cut(s) 116, 129, 450, 1471, 1786
BseNI ACTGG 2 cut(s) 1353, 1662
BseRI GAGGAG 1 cut(s) 202
BseSI GKGCMC 1 cut(s) 1075
BseXI GCAGC 1 cut(s) 1733
BsgI GTGCAG 1 cut(s) 200
BshFI GGCC 5 cut(s) 457, 936, 972, 1430, 1755
BshNI GGYRCC 2 cut(s) 620, 1140
BsiHKCI CYCGRG 1 cut(s) 660
BsiSI CCGG 1 cut(s) 933
BslI CCNNNNNNNGG 4 cut(s) 265, 714, 952, 1199
BsmAI GTCTC 3 cut(s) 455, 1231, 1362
BsmI GAATGC 1 cut(s) 1030
BsnI GGCC 5 cut(s) 457, 936, 972, 1430, 1755
BsoBI CYCGRG 1 cut(s) 660
Bsp119I TTCGAA 1 cut(s) 1528
Bsp1286I GDGCHC 3 cut(s) 1075, 1402, 1551
Bsp1407I TGTACA 1 cut(s) 439
Bsp19I CCATGG 4 cut(s) 416, 805, 1289, 1792
BspACI CCGC 3 cut(s) 1080, 1275, 1592
BspANI GGCC 5 cut(s) 457, 936, 972, 1430, 1755
BspCNI CTCAG 5 cut(s) 115, 130, 451, 1470, 1785
BspLI GGNNCC 8 cut(s) 45, 345, 412, 622, 666, 706, 1142, 1401
BspMAI CTGCAG 3 cut(s) 376, 1706, 1723
BspOI GCTAGC 1 cut(s) 333
BspPI GGATC 8 cut(s) 250, 338, 351, 659, 672, 809, 1202, 1493
BspT104I TTCGAA 1 cut(s) 1528
BspT107I GGYRCC 2 cut(s) 620, 1140
BspTI CTTAAG 1 cut(s) 38
BsrBI CCGCTC 1 cut(s) 1275
BsrDI GCAATG 1 cut(s) 340
BsrGI TGTACA 1 cut(s) 439
BsrI ACTGG 2 cut(s) 1353, 1662
BssECI CCNNGG 6 cut(s) 416, 603, 805, 1124, 1289, 1792
BssNI GRCGYC 1 cut(s) 1632
BssT1I CCWWGG 5 cut(s) 416, 805, 1124, 1289, 1792
Bst2UI CCWGG 2 cut(s) 605, 1200
Bst4CI ACNGT 4 cut(s) 295, 410, 1223, 1779
Bst6I CTCTTC 2 cut(s) 675, 1702
BstACI GRCGYC 1 cut(s) 1632
BstAFI CTTAAG 1 cut(s) 38
BstAUI TGTACA 1 cut(s) 439
BstBI TTCGAA 1 cut(s) 1528
BstC8I GCNNGC 1 cut(s) 331
BstDEI CTNAG 6 cut(s) 102, 138, 393, 459, 1457, 1772
BstDSI CCRYGG 4 cut(s) 416, 805, 1289, 1792
BstF5I GGATG 4 cut(s) 54, 363, 385, 706
BstMAI GTCTC 3 cut(s) 455, 1231, 1362
BstMWI GCNNNNNNNGC 2 cut(s) 1079, 1281
BstNI CCWGG 2 cut(s) 605, 1200
BstSCI CCNGG 3 cut(s) 603, 931, 1198
BstSFI CTRYAG 6 cut(s) 315, 372, 625, 675, 1702, 1719
BstSLI GKGCMC 1 cut(s) 1075
BstV1I GCAGC 1 cut(s) 1733
BstX2I RGATCY 5 cut(s) 60, 255, 343, 664, 1498
BstYI RGATCY 5 cut(s) 60, 255, 343, 664, 1498
BsuRI GGCC 5 cut(s) 457, 936, 972, 1430, 1755
BtgI CCRYGG 4 cut(s) 416, 805, 1289, 1792
BtgZI GCGATG 1 cut(s) 35
BtsCI GGATG 4 cut(s) 54, 363, 385, 706
BtsI GCAGTG 1 cut(s) 967
BtsIMutI CAGTG 4 cut(s) 491, 967, 1228, 1346
Cac8I GCNNGC 1 cut(s) 331
Cfr13I GGNCC 1 cut(s) 1233
CseI GACGC 3 cut(s) 30, 1621, 1729
Csp6I GTAC 4 cut(s) 312, 440, 1141, 1160
CviQI GTAC 4 cut(s) 312, 440, 1141, 1160
DdeI CTNAG 6 cut(s) 102, 138, 393, 459, 1457, 1772
EaeI YGGCCR 2 cut(s) 934, 970
Eam1104I CTCTTC 2 cut(s) 675, 1702
EarI CTCTTC 2 cut(s) 675, 1702
Eco130I CCWWGG 5 cut(s) 416, 805, 1124, 1289, 1792
Eco147I AGGCCT 1 cut(s) 1755
Eco24I GRGCYC 2 cut(s) 1402, 1551
Eco47I GGWCC 1 cut(s) 1233
Eco57I CTGAAG 3 cut(s) 87, 467, 1469
Eco88I CYCGRG 1 cut(s) 660
EcoRII CCWGG 2 cut(s) 603, 1198
EcoT14I CCWWGG 5 cut(s) 416, 805, 1124, 1289, 1792
EcoT38I GRGCYC 2 cut(s) 1402, 1551
ErhI CCWWGG 5 cut(s) 416, 805, 1124, 1289, 1792
FbaI TGATCA 1 cut(s) 568
Fnu4HI GCNGC 3 cut(s) 1080, 1593, 1722
FokI GGATG 4 cut(s) 41, 370, 392, 713
FriOI GRGCYC 2 cut(s) 1402, 1551
Fsp4HI GCNGC 3 cut(s) 1080, 1593, 1722
FspBI CTAG 7 cut(s) 98, 173, 299, 330, 404, 1244, 1596
GluI GCNGC 3 cut(s) 1080, 1593, 1722
HaeIII GGCC 5 cut(s) 457, 936, 972, 1430, 1755
HapII CCGG 1 cut(s) 933
HgaI GACGC 3 cut(s) 30, 1621, 1729
Hin1I GRCGYC 1 cut(s) 1632
HincII GTYRAC 1 cut(s) 1090
HindII GTYRAC 1 cut(s) 1090
HindIII AAGCTT 1 cut(s) 69
HinfI GANTC 6 cut(s) 386, 432, 463, 639, 645, 1465
HpaII CCGG 1 cut(s) 933
HphI GGTGA 2 cut(s) 334, 851
Hpy166II GTNNAC 3 cut(s) 1090, 1539, 1667
Hpy8I GTNNAC 3 cut(s) 1090, 1539, 1667
HpyAV CCTTC 5 cut(s) 511, 611, 659, 915, 1441
HpyCH4III ACNGT 4 cut(s) 295, 410, 1223, 1779
HpyF10VI GCNNNNNNNGC 2 cut(s) 1079, 1281
HpyF3I CTNAG 6 cut(s) 102, 138, 393, 459, 1457, 1772
Hsp92I GRCGYC 1 cut(s) 1632
KpnI GGTACC 1 cut(s) 1144
Ksp22I TGATCA 1 cut(s) 568
LmnI GCTCC 3 cut(s) 799, 1272, 1405
Lsp1109I GCAGC 1 cut(s) 1733
LweI GCATC 2 cut(s) 63, 646
MaeI CTAG 7 cut(s) 98, 173, 299, 330, 404, 1244, 1596
MaeIII GTNAC 8 cut(s) 268, 278, 322, 367, 962, 1004, 1261, 1307
MbiI CCGCTC 1 cut(s) 1275
MboII GAAGA 5 cut(s) 158, 626, 662, 1502, 1719
MfeI CAATTG 1 cut(s) 1155
MflI RGATCY 5 cut(s) 60, 255, 343, 664, 1498
MhlI GDGCHC 3 cut(s) 1075, 1402, 1551
MluCI AATT 9 cut(s) 194, 423, 737, 976, 1055, 1155, 1558, 1579, 1637
MlyI GAGTC 3 cut(s) 457, 648, 654
MmeI TCCRAC 2 cut(s) 893, 970
MseI TTAA 5 cut(s) 39, 134, 1170, 1299, 1673
MslI CAYNNNNRTG 2 cut(s) 590, 1011
MspA1I CMGCKG 2 cut(s) 1082, 1724
MspCI CTTAAG 1 cut(s) 38
MspI CCGG 1 cut(s) 933
MspR9I CCNGG 3 cut(s) 605, 933, 1200
MunI CAATTG 1 cut(s) 1155
Mva1269I GAATGC 1 cut(s) 1030
MvaI CCWGG 2 cut(s) 605, 1200
MwoI GCNNNNNNNGC 2 cut(s) 1079, 1281
NciI CCSGG 1 cut(s) 933
NcoI CCATGG 4 cut(s) 416, 805, 1289, 1792
NheI GCTAGC 1 cut(s) 329
NlaIV GGNNCC 8 cut(s) 45, 345, 412, 622, 666, 706, 1142, 1401
NmuCI GTSAC 4 cut(s) 322, 962, 1004, 1261
NspV TTCGAA 1 cut(s) 1528
PceI AGGCCT 1 cut(s) 1755
PctI GAATGC 1 cut(s) 1030
PfeI GAWTC 3 cut(s) 386, 432, 1465
PflMI CCANNNNNTGG 2 cut(s) 714, 952
PkrI GCNGC 3 cut(s) 1081, 1594, 1723
PleI GAGTC 3 cut(s) 457, 647, 653
PpsI GAGTC 3 cut(s) 457, 647, 653
Psp6I CCWGG 2 cut(s) 603, 1198
PspGI CCWGG 2 cut(s) 603, 1198
PspN4I GGNNCC 8 cut(s) 45, 345, 412, 622, 666, 706, 1142, 1401
PspPI GGNCC 1 cut(s) 1233
PsrI GAACNNNNNNTAC 2 cut(s) 1008, 1040
PstI CTGCAG 3 cut(s) 376, 1706, 1723
PsuI RGATCY 5 cut(s) 60, 255, 343, 664, 1498
PvuII CAGCTG 1 cut(s) 1724
RsaI GTAC 4 cut(s) 313, 441, 1142, 1161
RsaNI GTAC 4 cut(s) 312, 440, 1141, 1160
RseI CAYNNNNRTG 2 cut(s) 590, 1011
SaqAI TTAA 5 cut(s) 39, 134, 1170, 1299, 1673
SatI GCNGC 3 cut(s) 1080, 1593, 1722
Sau96I GGNCC 1 cut(s) 1233
SchI GAGTC 3 cut(s) 457, 648, 654
ScrFI CCNGG 3 cut(s) 605, 933, 1200
SduI GDGCHC 3 cut(s) 1075, 1402, 1551
SfaNI GCATC 2 cut(s) 63, 646
SfcI CTRYAG 6 cut(s) 315, 372, 625, 675, 1702, 1719
SfuI TTCGAA 1 cut(s) 1528
SinI GGWCC 1 cut(s) 1233
SmiMI CAYNNNNRTG 2 cut(s) 590, 1011
SmlI CTYRAG 2 cut(s) 38, 1228
SmoI CTYRAG 2 cut(s) 38, 1228
Sse9I AATT 9 cut(s) 194, 423, 737, 976, 1055, 1155, 1558, 1579, 1637
SseBI AGGCCT 1 cut(s) 1755
SsiI CCGC 3 cut(s) 1080, 1275, 1592
SspI AATATT 1 cut(s) 1177
SspMI CTAG 7 cut(s) 98, 173, 299, 330, 404, 1244, 1596
StuI AGGCCT 1 cut(s) 1755
StyD4I CCNGG 3 cut(s) 603, 931, 1198
StyI CCWWGG 5 cut(s) 416, 805, 1124, 1289, 1792
TaaI ACNGT 4 cut(s) 295, 410, 1223, 1779
TaqI TCGA 6 cut(s) 732, 865, 1387, 1444, 1486, 1528
TasI AATT 9 cut(s) 194, 423, 737, 976, 1055, 1155, 1558, 1579, 1637
TatI WGTACW 1 cut(s) 439
TauI GCSGC 2 cut(s) 1082, 1595
TfiI GAWTC 3 cut(s) 386, 432, 1465
Tru1I TTAA 5 cut(s) 39, 134, 1170, 1299, 1673
Tru9I TTAA 5 cut(s) 39, 134, 1170, 1299, 1673
TscAI CASTG 4 cut(s) 491, 967, 1228, 1353
TseFI GTSAC 4 cut(s) 322, 962, 1004, 1261
TseI GCWGC 1 cut(s) 1721
Tsp45I GTSAC 4 cut(s) 322, 962, 1004, 1261
TspRI CASTG 4 cut(s) 491, 967, 1228, 1353
Van91I CCANNNNNTGG 2 cut(s) 714, 952
Vha464I CTTAAG 1 cut(s) 38
VpaK11BI GGWCC 1 cut(s) 1233
XapI RAATTY 3 cut(s) 976, 1579, 1637
XbaI TCTAGA 1 cut(s) 403
XspI CTAG 7 cut(s) 98, 173, 299, 330, 404, 1244, 1596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.