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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 71, 137 |
| AciI | CCGC | 1 cut(s) | 349 |
| AcsI | RAATTY | 2 cut(s) | 46, 68 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 71, 137, 149, 293 |
| AgsI | TTSAA | 1 cut(s) | 177 |
| AjnI | CCWGG | 1 cut(s) | 130 |
| AluBI | AGCT | 1 cut(s) | 182 |
| AluI | AGCT | 1 cut(s) | 182 |
| Alw21I | GWGCWC | 1 cut(s) | 91 |
| Ama87I | CYCGRG | 1 cut(s) | 336 |
| AoxI | GGCC | 2 cut(s) | 403, 423 |
| ApoI | RAATTY | 2 cut(s) | 46, 68 |
| AspS9I | GGNCC | 3 cut(s) | 140, 404, 424 |
| AsuC2I | CCSGG | 1 cut(s) | 318 |
| AsuHPI | GGTGA | 1 cut(s) | 272 |
| AvaI | CYCGRG | 1 cut(s) | 336 |
| AvaII | GGWCC | 1 cut(s) | 140 |
| Bbv12I | GWGCWC | 1 cut(s) | 91 |
| BccI | CCATC | 5 cut(s) | 214, 229, 261, 370, 498 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 64, 78, 98, 112 |
| BciT130I | CCWGG | 1 cut(s) | 132 |
| BcnI | CCSGG | 1 cut(s) | 318 |
| BfaI | CTAG | 1 cut(s) | 266 |
| Bme1390I | CCNGG | 2 cut(s) | 132, 318 |
| Bme18I | GGWCC | 1 cut(s) | 140 |
| BmeT110I | CYCGRG | 1 cut(s) | 336 |
| BmgT120I | GGNCC | 3 cut(s) | 140, 404, 424 |
| BmrFI | CCNGG | 2 cut(s) | 132, 318 |
| BmsI | GCATC | 4 cut(s) | 104, 170, 334, 494 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 35 |
| BpuMI | CCSGG | 1 cut(s) | 318 |
| BsaBI | GATNNNNATC | 2 cut(s) | 369, 508 |
| BsaJI | CCNNGG | 2 cut(s) | 287, 317 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 71, 137, 149, 293 |
| Bse1I | ACTGG | 1 cut(s) | 257 |
| Bse8I | GATNNNNATC | 2 cut(s) | 369, 508 |
| BseBI | CCWGG | 1 cut(s) | 132 |
| BseDI | CCNNGG | 2 cut(s) | 287, 317 |
| BseGI | GGATG | 3 cut(s) | 161, 253, 381 |
| BseJI | GATNNNNATC | 2 cut(s) | 369, 508 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 71, 137, 149, 293 |
| BseNI | ACTGG | 1 cut(s) | 257 |
| BshFI | GGCC | 2 cut(s) | 405, 425 |
| BsiHKAI | GWGCWC | 1 cut(s) | 91 |
| BsiHKCI | CYCGRG | 1 cut(s) | 336 |
| BsiSI | CCGG | 1 cut(s) | 317 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 71, 137, 149, 293 |
| BsnI | GGCC | 2 cut(s) | 405, 425 |
| BsoBI | CYCGRG | 1 cut(s) | 336 |
| Bsp1286I | GDGCHC | 1 cut(s) | 91 |
| BspACI | CCGC | 1 cut(s) | 349 |
| BspANI | GGCC | 2 cut(s) | 405, 425 |
| BsrI | ACTGG | 1 cut(s) | 257 |
| BssECI | CCNNGG | 2 cut(s) | 287, 317 |
| BssT1I | CCWWGG | 1 cut(s) | 287 |
| Bst2UI | CCWGG | 1 cut(s) | 132 |
| BstC8I | GCNNGC | 1 cut(s) | 349 |
| BstDEI | CTNAG | 2 cut(s) | 146, 475 |
| BstF5I | GGATG | 3 cut(s) | 161, 253, 381 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 25 |
| BstNI | CCWGG | 1 cut(s) | 132 |
| BstSCI | CCNGG | 2 cut(s) | 130, 316 |
| BsuRI | GGCC | 2 cut(s) | 405, 425 |
| BtsCI | GGATG | 3 cut(s) | 161, 253, 381 |
| Cac8I | GCNNGC | 1 cut(s) | 349 |
| Cfr13I | GGNCC | 3 cut(s) | 140, 404, 424 |
| CviAII | CATG | 1 cut(s) | 352 |
| CviJI | RGCY | 8 cut(s) | 9, 61, 153, 182, 316, 405, 425, 452 |
| CviKI_1 | RGCY | 8 cut(s) | 9, 61, 153, 182, 316, 405, 425, 452 |
| DdeI | CTNAG | 2 cut(s) | 146, 475 |
| Eco130I | CCWWGG | 1 cut(s) | 287 |
| Eco47I | GGWCC | 1 cut(s) | 140 |
| Eco88I | CYCGRG | 1 cut(s) | 336 |
| EcoRII | CCWGG | 1 cut(s) | 130 |
| EcoT14I | CCWWGG | 1 cut(s) | 287 |
| ErhI | CCWWGG | 1 cut(s) | 287 |
| FaeI | CATG | 1 cut(s) | 355 |
| FaiI | YATR | 6 cut(s) | 80, 215, 247, 353, 429, 431 |
| FatI | CATG | 1 cut(s) | 351 |
| FauI | CCCGC | 1 cut(s) | 356 |
| FauNDI | CATATG | 1 cut(s) | 429 |
| FokI | GGATG | 3 cut(s) | 148, 240, 388 |
| FspBI | CTAG | 1 cut(s) | 266 |
| HaeIII | GGCC | 2 cut(s) | 405, 425 |
| HapII | CCGG | 1 cut(s) | 317 |
| Hin1II | CATG | 1 cut(s) | 355 |
| HindIII | AAGCTT | 1 cut(s) | 180 |
| HinfI | GANTC | 2 cut(s) | 325, 370 |
| HpaII | CCGG | 1 cut(s) | 317 |
| HphI | GGTGA | 1 cut(s) | 272 |
| Hpy188I | TCNGA | 2 cut(s) | 86, 375 |
| Hpy188III | TCNNGA | 3 cut(s) | 294, 338, 513 |
| Hpy99I | CGWCG | 1 cut(s) | 362 |
| HpyAV | CCTTC | 1 cut(s) | 235 |
| HpyCH4IV | ACGT | 1 cut(s) | 360 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 25 |
| HpyF3I | CTNAG | 2 cut(s) | 146, 475 |
| HpySE526I | ACGT | 1 cut(s) | 360 |
| Hsp92II | CATG | 1 cut(s) | 355 |
| LmnI | GCTCC | 3 cut(s) | 24, 33, 86 |
| LpnPI | CCDG | 4 cut(s) | 117, 144, 270, 330 |
| LweI | GCATC | 4 cut(s) | 104, 170, 334, 494 |
| MaeI | CTAG | 1 cut(s) | 266 |
| MaeII | ACGT | 1 cut(s) | 360 |
| MboII | GAAGA | 3 cut(s) | 180, 263, 353 |
| MhlI | GDGCHC | 1 cut(s) | 91 |
| MluCI | AATT | 3 cut(s) | 35, 46, 68 |
| MmeI | TCCRAC | 3 cut(s) | 46, 55, 362 |
| MnlI | CCTC | 4 cut(s) | 143, 285, 294, 442 |
| MseI | TTAA | 1 cut(s) | 38 |
| MspI | CCGG | 1 cut(s) | 317 |
| MspR9I | CCNGG | 2 cut(s) | 132, 318 |
| MvaI | CCWGG | 1 cut(s) | 132 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 25 |
| NciI | CCSGG | 1 cut(s) | 318 |
| NdeI | CATATG | 1 cut(s) | 429 |
| NlaIII | CATG | 1 cut(s) | 355 |
| NmeAIII | GCCGAG | 1 cut(s) | 35 |
| PfeI | GAWTC | 2 cut(s) | 325, 370 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 71, 137 |
| Psp6I | CCWGG | 1 cut(s) | 130 |
| PspGI | CCWGG | 1 cut(s) | 130 |
| PspPI | GGNCC | 3 cut(s) | 140, 404, 424 |
| SaqAI | TTAA | 1 cut(s) | 38 |
| Sau96I | GGNCC | 3 cut(s) | 140, 404, 424 |
| ScrFI | CCNGG | 2 cut(s) | 132, 318 |
| SduI | GDGCHC | 1 cut(s) | 91 |
| SetI | ASST | 4 cut(s) | 184, 293, 363, 483 |
| SfaNI | GCATC | 4 cut(s) | 104, 170, 334, 494 |
| SinI | GGWCC | 1 cut(s) | 140 |
| Sse9I | AATT | 3 cut(s) | 35, 46, 68 |
| SsiI | CCGC | 1 cut(s) | 349 |
| SspMI | CTAG | 1 cut(s) | 266 |
| StyD4I | CCNGG | 2 cut(s) | 130, 316 |
| StyI | CCWWGG | 1 cut(s) | 287 |
| TaiI | ACGT | 1 cut(s) | 363 |
| TaqI | TCGA | 1 cut(s) | 98 |
| TasI | AATT | 3 cut(s) | 35, 46, 68 |
| TfiI | GAWTC | 2 cut(s) | 325, 370 |
| Tru1I | TTAA | 1 cut(s) | 38 |
| Tru9I | TTAA | 1 cut(s) | 38 |
| TspDTI | ATGAA | 1 cut(s) | 102 |
| TspGWI | ACGGA | 2 cut(s) | 154, 181 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 71, 137 |
| VpaK11BI | GGWCC | 1 cut(s) | 140 |
| XapI | RAATTY | 2 cut(s) | 46, 68 |
| XspI | CTAG | 1 cut(s) | 266 |