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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfaI | GTAC | 1 cut(s) | 77 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 199, 262 |
| AgsI | TTSAA | 2 cut(s) | 103, 164 |
| AluBI | AGCT | 1 cut(s) | 106 |
| AluI | AGCT | 1 cut(s) | 106 |
| AoxI | GGCC | 2 cut(s) | 20, 282 |
| ApeKI | GCWGC | 1 cut(s) | 40 |
| AspS9I | GGNCC | 1 cut(s) | 20 |
| AsuC2I | CCSGG | 1 cut(s) | 58 |
| AsuHPI | GGTGA | 1 cut(s) | 230 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 256, 289 |
| BbsI | GAAGAC | 1 cut(s) | 91 |
| BbvI | GCAGC | 1 cut(s) | 52 |
| BccI | CCATC | 1 cut(s) | 217 |
| BcnI | CCSGG | 1 cut(s) | 58 |
| BfaI | CTAG | 2 cut(s) | 87, 320 |
| BfmI | CTRYAG | 1 cut(s) | 214 |
| BisI | GCNGC | 1 cut(s) | 41 |
| BlsI | GCNGC | 1 cut(s) | 42 |
| Bme1390I | CCNGG | 1 cut(s) | 58 |
| BmgT120I | GGNCC | 1 cut(s) | 20 |
| BmrFI | CCNGG | 1 cut(s) | 58 |
| BmsI | GCATC | 1 cut(s) | 214 |
| BpiI | GAAGAC | 1 cut(s) | 91 |
| BpuMI | CCSGG | 1 cut(s) | 58 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 199, 262 |
| BseGI | GGATG | 1 cut(s) | 205 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 199, 262 |
| BseRI | GAGGAG | 1 cut(s) | 344 |
| BseXI | GCAGC | 1 cut(s) | 52 |
| BshFI | GGCC | 2 cut(s) | 22, 284 |
| BsiSI | CCGG | 1 cut(s) | 58 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 199, 262 |
| BsnI | GGCC | 2 cut(s) | 22, 284 |
| Bsp143I | GATC | 1 cut(s) | 156 |
| BspANI | GGCC | 2 cut(s) | 22, 284 |
| BspHI | TCATGA | 2 cut(s) | 244, 259 |
| BssMI | GATC | 1 cut(s) | 156 |
| Bst6I | CTCTTC | 1 cut(s) | 2 |
| BstDEI | CTNAG | 1 cut(s) | 354 |
| BstF5I | GGATG | 1 cut(s) | 205 |
| BstKTI | GATC | 1 cut(s) | 159 |
| BstMBI | GATC | 1 cut(s) | 156 |
| BstSCI | CCNGG | 1 cut(s) | 56 |
| BstSFI | CTRYAG | 1 cut(s) | 214 |
| BstV1I | GCAGC | 1 cut(s) | 52 |
| BstV2I | GAAGAC | 1 cut(s) | 91 |
| BsuRI | GGCC | 2 cut(s) | 22, 284 |
| BtsCI | GGATG | 1 cut(s) | 205 |
| CciI | TCATGA | 2 cut(s) | 244, 259 |
| Cfr13I | GGNCC | 1 cut(s) | 20 |
| Csp6I | GTAC | 1 cut(s) | 76 |
| CviAII | CATG | 3 cut(s) | 245, 260, 286 |
| CviJI | RGCY | 4 cut(s) | 22, 106, 227, 284 |
| CviKI_1 | RGCY | 4 cut(s) | 22, 106, 227, 284 |
| CviQI | GTAC | 1 cut(s) | 76 |
| DdeI | CTNAG | 1 cut(s) | 354 |
| DpnI | GATC | 1 cut(s) | 158 |
| DpnII | GATC | 1 cut(s) | 156 |
| Eam1104I | CTCTTC | 1 cut(s) | 2 |
| EarI | CTCTTC | 1 cut(s) | 2 |
| FaeI | CATG | 3 cut(s) | 248, 263, 289 |
| FaiI | YATR | 5 cut(s) | 71, 146, 246, 261, 287 |
| FatI | CATG | 3 cut(s) | 244, 259, 285 |
| Fnu4HI | GCNGC | 1 cut(s) | 41 |
| FokI | GGATG | 1 cut(s) | 192 |
| Fsp4HI | GCNGC | 1 cut(s) | 41 |
| FspBI | CTAG | 2 cut(s) | 87, 320 |
| GluI | GCNGC | 1 cut(s) | 41 |
| HaeIII | GGCC | 2 cut(s) | 22, 284 |
| HapII | CCGG | 1 cut(s) | 58 |
| Hin1II | CATG | 3 cut(s) | 248, 263, 289 |
| HincII | GTYRAC | 1 cut(s) | 313 |
| HindII | GTYRAC | 1 cut(s) | 313 |
| HindIII | AAGCTT | 1 cut(s) | 104 |
| HinfI | GANTC | 2 cut(s) | 15, 302 |
| HpaII | CCGG | 1 cut(s) | 58 |
| HphI | GGTGA | 1 cut(s) | 230 |
| Hpy166II | GTNNAC | 1 cut(s) | 313 |
| Hpy188I | TCNGA | 1 cut(s) | 122 |
| Hpy188III | TCNNGA | 4 cut(s) | 50, 180, 245, 260 |
| Hpy8I | GTNNAC | 1 cut(s) | 313 |
| Hpy99I | CGWCG | 1 cut(s) | 98 |
| HpyAV | CCTTC | 2 cut(s) | 165, 251 |
| HpyCH4V | TGCA | 1 cut(s) | 205 |
| HpyF3I | CTNAG | 1 cut(s) | 354 |
| Hsp92II | CATG | 3 cut(s) | 248, 263, 289 |
| Kzo9I | GATC | 1 cut(s) | 156 |
| LpnPI | CCDG | 2 cut(s) | 35, 71 |
| Lsp1109I | GCAGC | 1 cut(s) | 52 |
| LweI | GCATC | 1 cut(s) | 214 |
| MaeI | CTAG | 2 cut(s) | 87, 320 |
| MalI | GATC | 1 cut(s) | 158 |
| MboI | GATC | 1 cut(s) | 156 |
| MboII | GAAGA | 7 cut(s) | 19, 24, 91, 137, 140, 189, 222 |
| MluCI | AATT | 3 cut(s) | 139, 187, 291 |
| MlyI | GAGTC | 1 cut(s) | 311 |
| MnlI | CCTC | 7 cut(s) | 54, 219, 256, 267, 274, 322, 325 |
| MseI | TTAA | 1 cut(s) | 294 |
| MslI | CAYNNNNRTG | 1 cut(s) | 243 |
| MspI | CCGG | 1 cut(s) | 58 |
| MspR9I | CCNGG | 1 cut(s) | 58 |
| NciI | CCSGG | 1 cut(s) | 58 |
| NdeII | GATC | 1 cut(s) | 156 |
| NlaIII | CATG | 3 cut(s) | 248, 263, 289 |
| PagI | TCATGA | 2 cut(s) | 244, 259 |
| PfeI | GAWTC | 1 cut(s) | 15 |
| PkrI | GCNGC | 1 cut(s) | 42 |
| PleI | GAGTC | 1 cut(s) | 310 |
| PpsI | GAGTC | 1 cut(s) | 310 |
| PspPI | GGNCC | 1 cut(s) | 20 |
| RsaI | GTAC | 1 cut(s) | 77 |
| RsaNI | GTAC | 1 cut(s) | 76 |
| RseI | CAYNNNNRTG | 1 cut(s) | 243 |
| SaqAI | TTAA | 1 cut(s) | 294 |
| SatI | GCNGC | 1 cut(s) | 41 |
| Sau3AI | GATC | 1 cut(s) | 156 |
| Sau96I | GGNCC | 1 cut(s) | 20 |
| SchI | GAGTC | 1 cut(s) | 311 |
| ScrFI | CCNGG | 1 cut(s) | 58 |
| SetI | ASST | 5 cut(s) | 65, 88, 108, 176, 243 |
| SfaNI | GCATC | 1 cut(s) | 214 |
| SfcI | CTRYAG | 1 cut(s) | 214 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 243 |
| Sse9I | AATT | 3 cut(s) | 139, 187, 291 |
| SspMI | CTAG | 2 cut(s) | 87, 320 |
| StyD4I | CCNGG | 1 cut(s) | 56 |
| TaqI | TCGA | 2 cut(s) | 155, 181 |
| TaqII | GACCGA | 1 cut(s) | 235 |
| TasI | AATT | 3 cut(s) | 139, 187, 291 |
| TatI | WGTACW | 1 cut(s) | 75 |
| TfiI | GAWTC | 1 cut(s) | 15 |
| Tru1I | TTAA | 1 cut(s) | 294 |
| Tru9I | TTAA | 1 cut(s) | 294 |
| TseI | GCWGC | 1 cut(s) | 40 |
| TspDTI | ATGAA | 3 cut(s) | 222, 233, 264 |
| TspGWI | ACGGA | 2 cut(s) | 19, 295 |
| XspI | CTAG | 2 cut(s) | 87, 320 |