FvH4_6g11611

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000073
Physical Location & Seq
Forward (+)
6955304 .. 6958059
2756 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g11611.t1

Sequence Viewer

Length: 2361 bp
ATGGAAGATTCACAAAAATCTTCTGACAGCCTTGTGGTGCAGATGAGGAGGAAGTTATCTTTATATGATTTGGACAGAAAGGTTAGATTGAATGCTGTCTTCTTTGCTGATAAGATCCCCAACAAGGTTACTATTTGTAATACCATGAAGTCTGTTCTAGGAAGGTTTGGCAATACAGGAGTAACTGCTAGTAACGAGAGGGATCCAAATGATAAGATGTTCATAGTTACCGCAGAAGATGCAGATTCAGCAAAGGATATCCTTGATGGATCACCATGGTCAATTATGAGATATTCTGTCCACTTCCAAGAATGGCCAGAAACTCTTGCTATAGAGGAACTACAAAGTAGCCAGATAGCTTTCTGGGTGCAAGTTAGGGGTGTTCCACCCTATATGTTCGAAGAGGAAAATGTCAGGGAGATGGCTGAAAAGTTTGGAGAGTACATGGGGATGGACGACCCCATTGAAAGAGAAGAAGGCACATACAGTTTTCTCCGGGTTAGAATCCTTCTTGATGCTCGTGATCCTCTTCCCACAGGCTATGAGCTACCAAGAGATGATGGAACCAAGAAGTGGGACACTGATTTACCTAAATCTCCATGCCCTCATGGAGCTGATCCGGAGAGTGAAAATGAGTATGGTGATTGGTTGAGAGCATTACCACCTCGGAAGCAAATCAGGAATGAACATTCTCAGGTGAAGACTGCAAGTGGCCGGAATAGAAGGAGATTTCCCGGCCAAACAATCCGGCCAATAGAAAGCAATGATAACAGCCATAATTCAAAGCCCCAAGGAGCCTCCTCAAGTCACATCAGAGAGTCTCAACCCCAAGGAAAGCATGCAGTCCCTGTCAGACTACAACTTTCTAACACAAGAGCCAATGTCTCTGCTGTCAACCATGGTGATAGCAACTACACAAGGGAGCTCTCAACGGAACAATTAAGGTACCCCACTACCCCAGCTGTTTCAAACCATAATAATATTTTCATGTCCTCCCCCCCACCTGGATTTGATCCTATCCTAAACAATATCTCAAGTACCTTTTTCCTTGAACAAACTCAGAACGTGACAAATGGGGGTAATGTTGGCTATCCATGGTTTGTTAATCAAGGAATGAGTCCCACCCAGGCGAAGAGGCCCCTTCAGTCTGATACTGCCCATATTCCCTCTAGAAGGAAGATAAGGAAATTCACCAAATATCGCACCTCTGGAACCGAGACCCTTGTGTCGAATACTGAGGCTGTGACTGATGGATGTTCAACGAGTGAAAGCGTTGAAGGTGGTGGTGGCTCGCCTACAGCCACAAGGAAAACATCGCCCATCCATTGTCTTTCTTTCGGAAACTCGAATGAAGGACAAGATATTAAAAGTCTAAGATTGAAGTGTAAGTTCTCCCATGGAATTACAGTGAAGCCAGTCAATACCGCTGGTGGGCTGGCACTATGGTGGGATAACAATGTTATAGTTCAAATACTCTCTAAATCCAAATTTCTGATTGATACAGTGGTCAAGTTCAAGTCTGACGATTCTTTAGTTCGGTTTTCTTGGTTCTATGGACCACCCGACAAGATTCGGCCTGGATTTTGGAATAGGTGTGCTAACTTGGCTGGTTCTATGGATCTCCCATGGTTGTGTGCTGGTGATTTTAATGAATTCTTATGGCCTCATGAAAAGGAGGGTGGTAACCCTTGGAATCCAGGTAAAAGGCGTTTTCTACGCGAGTTTATGGAGGCTAATGATTTGATCGAGCTTCAATCAAAGGGTCAAAAGCTTACTTGGTGTAACAACTGGCCAGAAGGAGGTCTAATTAAGATCAAGCTGGATAGAGGGGTGGTAAACACAAGGTGGTTGGAGAGGTGGCCAGATTCTAGTGTCTTCAATCATCCTCGGTTGGGGGGTATTGTGGAGGCCTCTTGGACCGACAACTCTCCAACTATTGGAGCTGCCCAATGGGTCACAAGAAGTCAAAGATGTGGTGTGGAGTTATCCAAGTGGAGCAAGAAGAAGTTCTCTAACAATCATATGGCTATTAATAGAAGAATAGAGGAACTTCAAGTCATACAGGAGTCTACAACAGTAGAAGCTCGTAACATAGAGTCCCTTTTAATTGGAGAAATTGGTGCTTTTTGGAACAAGGAGGAGAAATACTGGACACAACGTGCAAGAGTCAACTGGCTAAAAGCTGGGGACTCAAATACAAAATTTTTTCATTTGACAACCATCCAAAGAAGGCAACGGAACAAAATCCTCAAGCTTAAATCTACCAATGATGTATGGCTGGATCGGGAGGGTACTATTCGATCAGAAGTGGAGAATTATTTCAAGAATATTTTCAAGAGTTCTGGTGAGAGACTGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3

Protein Analysis

787

Amino Acids

89.42

Weight (kDa)

9.04

Isoelectric Point (pI)

50.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1225
Acc65I GGTACC 1 cut(s) 945
AccB1I GGYRCC 1 cut(s) 945
AccB7I CCANNNNNTGG 2 cut(s) 573, 1937
AccI GTMKAC 1 cut(s) 2069
AccII CGCG 1 cut(s) 1719
AccIII TCCGGA 1 cut(s) 619
AciI CCGC 2 cut(s) 231, 1425
AclWI GGATC 9 cut(s) 109, 197, 210, 277, 518, 611, 1007, 1626, 2289
AcoI YGGCCR 6 cut(s) 314, 712, 736, 749, 1790, 1859
AcsI RAATTY 4 cut(s) 1187, 1487, 1652, 2201
AcuI CTGAAG 1 cut(s) 1127
AdeI CACNNNGTG 2 cut(s) 1845, 2159
AfaI GTAC 4 cut(s) 443, 947, 1039, 2293
AfiI CCNNNNNNNGG 8 cut(s) 124, 573, 1004, 1173, 1431, 1799, 1892, 1937
AjnI CCWGG 4 cut(s) 1003, 1125, 1576, 1696
AleI CACNNNNGTG 1 cut(s) 1444
Alw21I GWGCWC 1 cut(s) 927
Alw26I GTCTC 4 cut(s) 825, 889, 1211, 2344
AlwI GGATC 9 cut(s) 109, 197, 210, 277, 518, 611, 1007, 1626, 2289
AlwNI CAGNNNCTG 1 cut(s) 848
Aor13HI TCCGGA 1 cut(s) 619
ApeKI GCWGC 1 cut(s) 1943
ApoI RAATTY 4 cut(s) 1187, 1487, 1652, 2201
AseI ATTAAT 1 cut(s) 2031
Asp700I GAANNNNTTC 3 cut(s) 2006, 2318, 2330
Asp718I GGTACC 1 cut(s) 945
AspS9I GGNCC 3 cut(s) 1137, 1556, 1917
AsuC2I CCSGG 2 cut(s) 497, 735
AsuHPI GGTGA 7 cut(s) 264, 653, 709, 914, 1183, 1652, 2357
AsuII TTCGAA 1 cut(s) 399
AvaII GGWCC 2 cut(s) 1556, 1917
BaeI ACNNNNGTAYC 2 cut(s) 1491, 1524
BalI TGGCCA 3 cut(s) 316, 1792, 1861
BamHI GGATCC 1 cut(s) 202
BanI GGYRCC 1 cut(s) 945
BanII GRGCYC 1 cut(s) 927
BauI CACGAG 1 cut(s) 519
BbsI GAAGAC 3 cut(s) 91, 707, 1867
Bbv12I GWGCWC 1 cut(s) 927
BbvI GCAGC 1 cut(s) 1930
BccI CCATC 7 cut(s) 260, 415, 445, 554, 1244, 1328, 2228
BciT130I CCWGG 4 cut(s) 1005, 1127, 1578, 1698
BcnI CCSGG 2 cut(s) 497, 735
BcoDI GTCTC 4 cut(s) 825, 889, 1211, 2344
BfaI CTAG 4 cut(s) 158, 189, 1170, 1869
BfmI CTRYAG 2 cut(s) 330, 1296
BisI GCNGC 1 cut(s) 1944
BlsI GCNGC 1 cut(s) 1945
Bme1390I CCNGG 6 cut(s) 497, 735, 1005, 1127, 1578, 1698
Bme18I GGWCC 2 cut(s) 1556, 1917
BmgT120I GGNCC 3 cut(s) 1137, 1556, 1917
BmiI GGNNCC 6 cut(s) 204, 565, 796, 947, 1139, 1213
BmrFI CCNGG 6 cut(s) 497, 735, 1005, 1127, 1578, 1698
BmsI GCATC 2 cut(s) 229, 505
BpiI GAAGAC 3 cut(s) 91, 707, 1867
Bpu14I TTCGAA 1 cut(s) 399
BpuEI CTTGAG 3 cut(s) 787, 1018, 2234
BpuMI CCSGG 2 cut(s) 497, 735
BsaI GGTCTC 1 cut(s) 1211
BsaWI WCCGGW 1 cut(s) 619
Bsc4I CCNNNNNNNGG 8 cut(s) 124, 573, 1004, 1173, 1431, 1799, 1892, 1937
Bse1I ACTGG 5 cut(s) 1415, 1793, 2153, 2177, 2358
Bse3DI GCAATG 1 cut(s) 769
BseAI TCCGGA 1 cut(s) 619
BseBI CCWGG 4 cut(s) 1005, 1127, 1578, 1698
BseGI GGATG 5 cut(s) 456, 1259, 1320, 1882, 2220
BseLI CCNNNNNNNGG 8 cut(s) 124, 573, 1004, 1173, 1431, 1799, 1892, 1937
BseMI GCAATG 1 cut(s) 769
BseMII CTCAG 3 cut(s) 707, 1073, 1227
BseNI ACTGG 5 cut(s) 1415, 1793, 2153, 2177, 2358
BseRI GAGGAG 3 cut(s) 61, 790, 2153
BseXI GCAGC 1 cut(s) 1930
BseYI CCCAGC 2 cut(s) 958, 2183
BsgI GTGCAG 1 cut(s) 59
Bsh1236I CGCG 1 cut(s) 1719
BshNI GGYRCC 1 cut(s) 945
BsiHKAI GWGCWC 1 cut(s) 927
BsiSI CCGG 5 cut(s) 496, 620, 715, 735, 748
BslFI GGGAC 5 cut(s) 590, 830, 1104, 2083, 2201
BslI CCNNNNNNNGG 8 cut(s) 124, 573, 1004, 1173, 1431, 1799, 1892, 1937
BsmAI GTCTC 4 cut(s) 825, 889, 1211, 2344
BsmFI GGGAC 5 cut(s) 590, 830, 1104, 2083, 2201
BsmI GAATGC 1 cut(s) 97
Bso31I GGTCTC 1 cut(s) 1211
Bsp119I TTCGAA 1 cut(s) 399
Bsp1286I GDGCHC 1 cut(s) 927
Bsp13I TCCGGA 1 cut(s) 619
Bsp19I CCATGG 5 cut(s) 275, 898, 1094, 1396, 1625
BspACI CCGC 2 cut(s) 231, 1425
BspCNI CTCAG 3 cut(s) 706, 1072, 1228
BspEI TCCGGA 1 cut(s) 619
BspFNI CGCG 1 cut(s) 1719
BspHI TCATGA 1 cut(s) 1666
BspLI GGNNCC 6 cut(s) 204, 565, 796, 947, 1139, 1213
BspPI GGATC 9 cut(s) 109, 197, 210, 277, 518, 611, 1007, 1626, 2289
BspT104I TTCGAA 1 cut(s) 399
BspT107I GGYRCC 1 cut(s) 945
BspTNI GGTCTC 1 cut(s) 1211
BsrDI GCAATG 1 cut(s) 769
BsrI ACTGG 5 cut(s) 1415, 1793, 2153, 2177, 2358
BssSI CACGAG 1 cut(s) 519
BssT1I CCWWGG 8 cut(s) 275, 790, 829, 898, 1094, 1396, 1625, 1688
Bst2BI CACGAG 1 cut(s) 519
Bst2UI CCWGG 4 cut(s) 1005, 1127, 1578, 1698
Bst4CI ACNGT 4 cut(s) 488, 1408, 1504, 2077
Bst6I CTCTTC 3 cut(s) 396, 534, 1127
BstAPI GCANNNNNTGC 1 cut(s) 239
BstBI TTCGAA 1 cut(s) 399
BstC8I GCNNGC 3 cut(s) 840, 1292, 1437
BstDEI CTNAG 4 cut(s) 693, 1059, 1236, 1373
BstDSI CCRYGG 5 cut(s) 275, 898, 1094, 1396, 1625
BstEII GGTNACC 1 cut(s) 1682
BstENI CCTNNNNNAGG 1 cut(s) 1171
BstF5I GGATG 5 cut(s) 456, 1259, 1320, 1882, 2220
BstFNI CGCG 1 cut(s) 1719
BstMAI GTCTC 4 cut(s) 825, 889, 1211, 2344
BstMWI GCNNNNNNNGC 3 cut(s) 239, 248, 1604
BstNI CCWGG 4 cut(s) 1005, 1127, 1578, 1698
BstNSI RCATGY 1 cut(s) 842
BstPI GGTNACC 1 cut(s) 1682
BstSCI CCNGG 6 cut(s) 495, 733, 1003, 1125, 1576, 1696
BstSFI CTRYAG 2 cut(s) 330, 1296
BstUI CGCG 1 cut(s) 1719
BstV1I GCAGC 1 cut(s) 1930
BstV2I GAAGAC 3 cut(s) 91, 707, 1867
BstX2I RGATCY 3 cut(s) 114, 202, 1618
BstYI RGATCY 3 cut(s) 114, 202, 1618
BtgI CCRYGG 5 cut(s) 275, 898, 1094, 1396, 1625
BtgZI GCGATG 1 cut(s) 1299
BtsCI GGATG 5 cut(s) 456, 1259, 1320, 1882, 2220
BtsIMutI CAGTG 3 cut(s) 579, 1413, 1509
Cac8I GCNNGC 3 cut(s) 840, 1292, 1437
CaiI CAGNNNCTG 1 cut(s) 848
CciI TCATGA 1 cut(s) 1666
Cfr13I GGNCC 3 cut(s) 1137, 1556, 1917
Csp6I GTAC 4 cut(s) 442, 946, 1038, 2292
CviQI GTAC 4 cut(s) 442, 946, 1038, 2292
DdeI CTNAG 4 cut(s) 693, 1059, 1236, 1373
DraIII CACNNNGTG 2 cut(s) 1845, 2159
DrdI GACNNNNNNGTC 1 cut(s) 1225
DseDI GACNNNNNNGTC 1 cut(s) 1225
EaeI YGGCCR 6 cut(s) 314, 712, 736, 749, 1790, 1859
Eam1104I CTCTTC 3 cut(s) 396, 534, 1127
EarI CTCTTC 3 cut(s) 396, 534, 1127
Ecl136II GAGCTC 1 cut(s) 925
Eco130I CCWWGG 8 cut(s) 275, 790, 829, 898, 1094, 1396, 1625, 1688
Eco147I AGGCCT 1 cut(s) 1910
Eco24I GRGCYC 1 cut(s) 927
Eco31I GGTCTC 1 cut(s) 1211
Eco32I GATATC 1 cut(s) 259
Eco47I GGWCC 2 cut(s) 1556, 1917
Eco53kI GAGCTC 1 cut(s) 925
Eco57I CTGAAG 1 cut(s) 1127
Eco91I GGTNACC 1 cut(s) 1682
EcoICRI GAGCTC 1 cut(s) 925
EcoNI CCTNNNNNAGG 1 cut(s) 1171
EcoO109I RGGNCCY 1 cut(s) 1137
EcoO65I GGTNACC 1 cut(s) 1682
EcoRI GAATTC 1 cut(s) 1652
EcoRII CCWGG 4 cut(s) 1003, 1125, 1576, 1696
EcoRV GATATC 1 cut(s) 259
EcoT14I CCWWGG 8 cut(s) 275, 790, 829, 898, 1094, 1396, 1625, 1688
EcoT38I GRGCYC 1 cut(s) 927
ErhI CCWWGG 8 cut(s) 275, 790, 829, 898, 1094, 1396, 1625, 1688
FaqI GGGAC 5 cut(s) 590, 830, 1104, 2083, 2201
FauNDI CATATG 1 cut(s) 2022
FblI GTMKAC 1 cut(s) 2069
Fnu4HI GCNGC 1 cut(s) 1944
FokI GGATG 5 cut(s) 463, 1266, 1307, 1869, 2207
FriOI GRGCYC 1 cut(s) 927
Fsp4HI GCNGC 1 cut(s) 1944
FspBI CTAG 4 cut(s) 158, 189, 1170, 1869
GluI GCNGC 1 cut(s) 1944
GsaI CCCAGC 2 cut(s) 962, 2187
HapII CCGG 5 cut(s) 496, 620, 715, 735, 748
HincII GTYRAC 2 cut(s) 895, 2170
HindII GTYRAC 2 cut(s) 895, 2170
HindIII AAGCTT 2 cut(s) 1769, 2252
HpaII CCGG 5 cut(s) 496, 620, 715, 735, 748
HphI GGTGA 7 cut(s) 264, 653, 709, 914, 1183, 1652, 2357
Hpy166II GTNNAC 5 cut(s) 301, 895, 1837, 2070, 2170
Hpy8I GTNNAC 5 cut(s) 301, 895, 1837, 2070, 2170
HpyCH4III ACNGT 4 cut(s) 488, 1408, 1504, 2077
HpyCH4IV ACGT 2 cut(s) 1065, 2158
HpyCH4V TGCA 6 cut(s) 40, 242, 370, 707, 842, 2162
HpyF10VI GCNNNNNNNGC 3 cut(s) 239, 248, 1604
HpyF3I CTNAG 4 cut(s) 693, 1059, 1236, 1373
HpySE526I ACGT 2 cut(s) 1065, 2158
Kpn2I TCCGGA 1 cut(s) 619
KpnI GGTACC 1 cut(s) 949
LmnI GCTCC 5 cut(s) 611, 794, 922, 1940, 1995
Lsp1109I GCAGC 1 cut(s) 1930
LweI GCATC 2 cut(s) 229, 505
MaeI CTAG 4 cut(s) 158, 189, 1170, 1869
MaeII ACGT 2 cut(s) 1065, 2158
MflI RGATCY 3 cut(s) 114, 202, 1618
MhlI GDGCHC 1 cut(s) 927
MlsI TGGCCA 3 cut(s) 316, 1792, 1861
MluNI TGGCCA 3 cut(s) 316, 1792, 1861
MlyI GAGTC 6 cut(s) 827, 1126, 2075, 2105, 2175, 2183
MmeI TCCRAC 2 cut(s) 1830, 1955
Mox20I TGGCCA 3 cut(s) 316, 1792, 1861
MroI TCCGGA 1 cut(s) 619
MroXI GAANNNNTTC 3 cut(s) 2006, 2318, 2330
MscI TGGCCA 3 cut(s) 316, 1792, 1861
MseI TTAA 8 cut(s) 941, 1104, 1365, 1647, 1809, 2031, 2105, 2256
MslI CAYNNNNRTG 3 cut(s) 449, 1444, 1630
Msp20I TGGCCA 3 cut(s) 316, 1792, 1861
MspA1I CMGCKG 2 cut(s) 962, 1427
MspI CCGG 5 cut(s) 496, 620, 715, 735, 748
MspR9I CCNGG 6 cut(s) 497, 735, 1005, 1127, 1578, 1698
Mva1269I GAATGC 1 cut(s) 97
MvaI CCWGG 4 cut(s) 1005, 1127, 1578, 1698
MvnI CGCG 1 cut(s) 1719
MwoI GCNNNNNNNGC 3 cut(s) 239, 248, 1604
NciI CCSGG 2 cut(s) 497, 735
NcoI CCATGG 5 cut(s) 275, 898, 1094, 1396, 1625
NdeI CATATG 1 cut(s) 2022
NlaIV GGNNCC 6 cut(s) 204, 565, 796, 947, 1139, 1213
NmuCI GTSAC 4 cut(s) 806, 1066, 1243, 1954
NspI RCATGY 1 cut(s) 842
NspV TTCGAA 1 cut(s) 399
OliI CACNNNNGTG 1 cut(s) 1444
PaeI GCATGC 1 cut(s) 842
PagI TCATGA 1 cut(s) 1666
PceI AGGCCT 1 cut(s) 1910
PctI GAATGC 1 cut(s) 97
PdmI GAANNNNTTC 3 cut(s) 2006, 2318, 2330
PfeI GAWTC 7 cut(s) 8, 245, 504, 1526, 1570, 1693, 1865
PflMI CCANNNNNTGG 2 cut(s) 573, 1937
PkrI GCNGC 1 cut(s) 1945
PleI GAGTC 6 cut(s) 826, 1125, 2074, 2104, 2174, 2183
PpsI GAGTC 6 cut(s) 826, 1125, 2074, 2104, 2174, 2183
PshBI ATTAAT 1 cut(s) 2031
Psp124BI GAGCTC 1 cut(s) 927
Psp6I CCWGG 4 cut(s) 1003, 1125, 1576, 1696
PspEI GGTNACC 1 cut(s) 1682
PspFI CCCAGC 2 cut(s) 958, 2183
PspGI CCWGG 4 cut(s) 1003, 1125, 1576, 1696
PspN4I GGNNCC 6 cut(s) 204, 565, 796, 947, 1139, 1213
PspPI GGNCC 3 cut(s) 1137, 1556, 1917
PstNI CAGNNNCTG 1 cut(s) 848
PsuI RGATCY 3 cut(s) 114, 202, 1618
PvuII CAGCTG 1 cut(s) 962
RsaI GTAC 4 cut(s) 443, 947, 1039, 2293
RsaNI GTAC 4 cut(s) 442, 946, 1038, 2292
RseI CAYNNNNRTG 3 cut(s) 449, 1444, 1630
SacI GAGCTC 1 cut(s) 927
SaqAI TTAA 8 cut(s) 941, 1104, 1365, 1647, 1809, 2031, 2105, 2256
SatI GCNGC 1 cut(s) 1944
Sau96I GGNCC 3 cut(s) 1137, 1556, 1917
SchI GAGTC 6 cut(s) 827, 1126, 2075, 2105, 2175, 2183
ScrFI CCNGG 6 cut(s) 497, 735, 1005, 1127, 1578, 1698
SduI GDGCHC 1 cut(s) 927
SfaNI GCATC 2 cut(s) 229, 505
SfcI CTRYAG 2 cut(s) 330, 1296
SfuI TTCGAA 1 cut(s) 399
SinI GGWCC 2 cut(s) 1556, 1917
SmiMI CAYNNNNRTG 3 cut(s) 449, 1444, 1630
SmlI CTYRAG 3 cut(s) 802, 1033, 2249
SmoI CTYRAG 3 cut(s) 802, 1033, 2249
SphI GCATGC 1 cut(s) 842
SseBI AGGCCT 1 cut(s) 1910
SsiI CCGC 2 cut(s) 231, 1425
SspI AATATT 2 cut(s) 982, 2329
SspMI CTAG 4 cut(s) 158, 189, 1170, 1869
SstI GAGCTC 1 cut(s) 927
StuI AGGCCT 1 cut(s) 1910
StyD4I CCNGG 6 cut(s) 495, 733, 1003, 1125, 1576, 1696
StyI CCWWGG 8 cut(s) 275, 790, 829, 898, 1094, 1396, 1625, 1688
TaaI ACNGT 4 cut(s) 488, 1408, 1504, 2077
TaiI ACGT 2 cut(s) 1068, 2161
TaqI TCGA 5 cut(s) 399, 1229, 1346, 1746, 2299
TaqII GACCGA 1 cut(s) 1934
TatI WGTACW 1 cut(s) 441
TfiI GAWTC 7 cut(s) 8, 245, 504, 1526, 1570, 1693, 1865
Tru1I TTAA 8 cut(s) 941, 1104, 1365, 1647, 1809, 2031, 2105, 2256
Tru9I TTAA 8 cut(s) 941, 1104, 1365, 1647, 1809, 2031, 2105, 2256
TscAI CASTG 3 cut(s) 586, 1413, 1509
TseFI GTSAC 4 cut(s) 806, 1066, 1243, 1954
TseI GCWGC 1 cut(s) 1943
Tsp45I GTSAC 4 cut(s) 806, 1066, 1243, 1954
TspDTI ATGAA 8 cut(s) 161, 211, 699, 976, 1365, 1665, 1683, 2198
TspGWI ACGGA 2 cut(s) 947, 2251
TspRI CASTG 3 cut(s) 586, 1413, 1509
Van91I CCANNNNNTGG 2 cut(s) 573, 1937
VpaK11BI GGWCC 2 cut(s) 1556, 1917
VspI ATTAAT 1 cut(s) 2031
XagI CCTNNNNNAGG 1 cut(s) 1171
XapI RAATTY 4 cut(s) 1187, 1487, 1652, 2201
XbaI TCTAGA 1 cut(s) 1169
XceI RCATGY 1 cut(s) 842
XmiI GTMKAC 1 cut(s) 2069
XmnI GAANNNNTTC 3 cut(s) 2006, 2318, 2330
XspI CTAG 4 cut(s) 158, 189, 1170, 1869
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.