Rmu_sc0024164.1_g000001

Domain of unknown function (DUF4283)

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0024164.1
Physical Location & Seq
Forward (+)
67 .. 963
897 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0024164.1_g000001.1.cds

Sequence Viewer

Length: 804 bp
atgaccaccctcaaacggatctggtcacaatatggaaatgttaatataatagctcgtgatgagaaagatccagaagataaggtatggcctgcaaccaaagctattgaagatattccgacacacctgattgctttttggatgcaaataagaggtgtgcctctttgtctatatgtggagtcaaatgttagggatatggttacccatttcggtgagttcatgactatggatgaccccctcaatggtggtgatggaacctacagtttccttagagtccgtgtactgttcgatggaagcaaacccctgctggctggtttcaggcttgctagagatgatggctctgtttcgtgggttgaagtcaagtatgaaaagcttgcaaagttttgttatcactgtggcagattaaggcataaccacaacatcagagccccttgtatgaggctagttgattcccaaaatgaaaatgtggaacttggtagctggatgtcaactttagcttttcgtcgaccagttagacaaccaattcaacctccacatgcggtggtgcaggaagcccaagcccaatcagccgcggagaccattccggcaacgccaatctctagacggagaagggcaggtcaaatttttgaaccttttggtgtggggacagtcggccaaaattccagttctcaaggtgctctctctacaagggcagaaagcagcccctctaaccaggttcaaagctggacaagaccatacgagggctctgggaatcttttacagcccccaacaaataaccactctctctggtcaggtttctcatcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

267

Amino Acids

29.99

Weight (kDa)

8.71

Isoelectric Point (pI)

53.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 602
AccI GTMKAC 1 cut(s) 502
AccII CGCG 1 cut(s) 569
AciI CCGC 3 cut(s) 536, 567, 569
AclWI GGATC 2 cut(s) 26, 62
AcoI YGGCCR 1 cut(s) 649
AcsI RAATTY 2 cut(s) 618, 655
AfaI GTAC 1 cut(s) 279
AfiI CCNNNNNNNGG 3 cut(s) 15, 239, 737
AgsI TTSAA 5 cut(s) 107, 353, 524, 626, 716
AjnI CCWGG 1 cut(s) 708
AluBI AGCT 6 cut(s) 53, 101, 370, 477, 494, 720
AluI AGCT 6 cut(s) 53, 101, 370, 477, 494, 720
Alw21I GWGCWC 1 cut(s) 676
Alw26I GTCTC 1 cut(s) 566
AlwI GGATC 2 cut(s) 26, 62
AoxI GGCC 2 cut(s) 86, 649
ApeKI GCWGC 1 cut(s) 696
ApoI RAATTY 2 cut(s) 618, 655
Asp700I GAANNNNTTC 1 cut(s) 111
AsuHPI GGTGA 2 cut(s) 221, 257
BanII GRGCYC 2 cut(s) 427, 743
BauI CACGAG 1 cut(s) 54
Bbv12I GWGCWC 1 cut(s) 676
BbvI GCAGC 1 cut(s) 708
BccI CCATC 3 cut(s) 242, 281, 326
BciT130I CCWGG 1 cut(s) 710
BcoDI GTCTC 1 cut(s) 566
BfaI CTAG 3 cut(s) 324, 440, 597
BfmI CTRYAG 1 cut(s) 256
BfuAI ACCTGC 1 cut(s) 602
BisI GCNGC 2 cut(s) 567, 697
BlsI GCNGC 2 cut(s) 568, 698
Bme1390I CCNGG 1 cut(s) 710
BmiI GGNNCC 1 cut(s) 253
BmrFI CCNGG 1 cut(s) 710
BmsI GCATC 1 cut(s) 129
BpuEI CTTGAG 1 cut(s) 651
BsaI GGTCTC 1 cut(s) 566
BsaJI CCNNGG 1 cut(s) 567
Bsc4I CCNNNNNNNGG 3 cut(s) 15, 239, 737
Bse1I ACTGG 2 cut(s) 506, 660
BseBI CCWGG 1 cut(s) 710
BseDI CCNNGG 1 cut(s) 567
BseGI GGATG 3 cut(s) 144, 232, 486
BseLI CCNNNNNNNGG 3 cut(s) 15, 239, 737
BseNI ACTGG 2 cut(s) 506, 660
BseXI GCAGC 1 cut(s) 708
BsgI GTGCAG 1 cut(s) 563
Bsh1236I CGCG 1 cut(s) 569
BshFI GGCC 2 cut(s) 88, 651
BsiHKAI GWGCWC 1 cut(s) 676
BsiSI CCGG 1 cut(s) 581
BslFI GGGAC 1 cut(s) 655
BslI CCNNNNNNNGG 3 cut(s) 15, 239, 737
BsmAI GTCTC 1 cut(s) 566
BsmFI GGGAC 1 cut(s) 655
BsnI GGCC 2 cut(s) 88, 651
Bso31I GGTCTC 1 cut(s) 566
Bsp1286I GDGCHC 3 cut(s) 427, 676, 743
Bsp143I GATC 2 cut(s) 18, 67
BspACI CCGC 3 cut(s) 536, 567, 569
BspANI GGCC 2 cut(s) 88, 651
BspFNI CGCG 1 cut(s) 569
BspHI TCATGA 2 cut(s) 216, 800
BspLI GGNNCC 1 cut(s) 253
BspMI ACCTGC 1 cut(s) 602
BspPI GGATC 2 cut(s) 26, 62
BspTNI GGTCTC 1 cut(s) 566
BsrI ACTGG 2 cut(s) 506, 660
BssECI CCNNGG 1 cut(s) 567
BssMI GATC 2 cut(s) 18, 67
BssSI CACGAG 1 cut(s) 54
Bst2BI CACGAG 1 cut(s) 54
Bst2UI CCWGG 1 cut(s) 710
Bst4CI ACNGT 4 cut(s) 260, 282, 392, 646
BstC8I GCNNGC 4 cut(s) 90, 306, 321, 372
BstDEI CTNAG 1 cut(s) 266
BstDSI CCRYGG 1 cut(s) 567
BstEII GGTNACC 1 cut(s) 196
BstF5I GGATG 3 cut(s) 144, 232, 486
BstFNI CGCG 1 cut(s) 569
BstKTI GATC 2 cut(s) 21, 70
BstMAI GTCTC 1 cut(s) 566
BstMBI GATC 2 cut(s) 18, 67
BstMWI GCNNNNNNNGC 2 cut(s) 98, 563
BstNI CCWGG 1 cut(s) 710
BstNSI RCATGY 1 cut(s) 536
BstPI GGTNACC 1 cut(s) 196
BstSCI CCNGG 1 cut(s) 708
BstSFI CTRYAG 1 cut(s) 256
BstUI CGCG 1 cut(s) 569
BstV1I GCAGC 1 cut(s) 708
BstX2I RGATCY 2 cut(s) 18, 67
BstYI RGATCY 2 cut(s) 18, 67
BsuRI GGCC 2 cut(s) 88, 651
BtgI CCRYGG 1 cut(s) 567
BtsCI GGATG 3 cut(s) 144, 232, 486
BtsIMutI CAGTG 1 cut(s) 388
BveI ACCTGC 1 cut(s) 602
Cac8I GCNNGC 4 cut(s) 90, 306, 321, 372
CciI TCATGA 2 cut(s) 216, 800
Cfr42I CCGCGG 1 cut(s) 570
CsiI ACCWGGT 1 cut(s) 708
Csp6I GTAC 1 cut(s) 278
CviAII CATG 3 cut(s) 217, 533, 801
CviQI GTAC 1 cut(s) 278
DdeI CTNAG 1 cut(s) 266
DpnI GATC 2 cut(s) 20, 69
DpnII GATC 2 cut(s) 18, 67
EaeI YGGCCR 1 cut(s) 649
Eco24I GRGCYC 2 cut(s) 427, 743
Eco31I GGTCTC 1 cut(s) 566
Eco91I GGTNACC 1 cut(s) 196
EcoO65I GGTNACC 1 cut(s) 196
EcoRII CCWGG 1 cut(s) 708
EcoT38I GRGCYC 2 cut(s) 427, 743
FaeI CATG 3 cut(s) 220, 536, 804
FaqI GGGAC 1 cut(s) 655
FatI CATG 3 cut(s) 216, 532, 800
FblI GTMKAC 1 cut(s) 502
Fnu4HI GCNGC 2 cut(s) 567, 697
FokI GGATG 3 cut(s) 151, 239, 493
FriOI GRGCYC 2 cut(s) 427, 743
Fsp4HI GCNGC 2 cut(s) 567, 697
FspBI CTAG 3 cut(s) 324, 440, 597
GluI GCNGC 2 cut(s) 567, 697
HaeIII GGCC 2 cut(s) 88, 651
HapII CCGG 1 cut(s) 581
Hin1II CATG 3 cut(s) 220, 536, 804
HincII GTYRAC 2 cut(s) 486, 503
HindII GTYRAC 2 cut(s) 486, 503
HindIII AAGCTT 1 cut(s) 368
HinfI GANTC 4 cut(s) 176, 270, 446, 748
HpaII CCGG 1 cut(s) 581
HphI GGTGA 2 cut(s) 221, 257
Hpy166II GTNNAC 3 cut(s) 278, 486, 503
Hpy188I TCNGA 2 cut(s) 117, 422
Hpy188III TCNNGA 5 cut(s) 56, 71, 217, 597, 801
Hpy8I GTNNAC 3 cut(s) 278, 486, 503
Hpy99I CGWCG 1 cut(s) 504
HpyAV CCTTC 1 cut(s) 600
HpyCH4III ACNGT 4 cut(s) 260, 282, 392, 646
HpyCH4V TGCA 4 cut(s) 92, 142, 374, 544
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 563
HpyF3I CTNAG 1 cut(s) 266
Hsp92II CATG 3 cut(s) 220, 536, 804
KspI CCGCGG 1 cut(s) 570
Kzo9I GATC 2 cut(s) 18, 67
Lsp1109I GCAGC 1 cut(s) 708
LweI GCATC 1 cut(s) 129
MabI ACCWGGT 1 cut(s) 708
MaeI CTAG 3 cut(s) 324, 440, 597
MaeIII GTNAC 2 cut(s) 24, 196
MalI GATC 2 cut(s) 20, 69
MboI GATC 2 cut(s) 18, 67
MboII GAAGA 2 cut(s) 86, 119
MflI RGATCY 2 cut(s) 18, 67
MhlI GDGCHC 3 cut(s) 427, 676, 743
MluCI AATT 3 cut(s) 519, 618, 655
MlyI GAGTC 2 cut(s) 185, 279
MmeI TCCRAC 1 cut(s) 140
MnlI CCTC 8 cut(s) 20, 143, 168, 245, 429, 537, 712, 730
MroXI GAANNNNTTC 1 cut(s) 111
MseI TTAA 2 cut(s) 42, 401
MslI CAYNNNNRTG 2 cut(s) 207, 221
MspA1I CMGCKG 1 cut(s) 569
MspI CCGG 1 cut(s) 581
MspR9I CCNGG 1 cut(s) 710
MvaI CCWGG 1 cut(s) 710
MvnI CGCG 1 cut(s) 569
MwoI GCNNNNNNNGC 2 cut(s) 98, 563
NdeII GATC 2 cut(s) 18, 67
NlaIII CATG 3 cut(s) 220, 536, 804
NlaIV GGNNCC 1 cut(s) 253
NmuCI GTSAC 1 cut(s) 24
NspI RCATGY 1 cut(s) 536
PagI TCATGA 2 cut(s) 216, 800
PdmI GAANNNNTTC 1 cut(s) 111
PfeI GAWTC 2 cut(s) 446, 748
PkrI GCNGC 2 cut(s) 568, 698
PleI GAGTC 2 cut(s) 184, 278
PpsI GAGTC 2 cut(s) 184, 278
Psp6I CCWGG 1 cut(s) 708
PspEI GGTNACC 1 cut(s) 196
PspGI CCWGG 1 cut(s) 708
PspN4I GGNNCC 1 cut(s) 253
PsuI RGATCY 2 cut(s) 18, 67
RsaI GTAC 1 cut(s) 279
RsaNI GTAC 1 cut(s) 278
RseI CAYNNNNRTG 2 cut(s) 207, 221
SacII CCGCGG 1 cut(s) 570
SalI GTCGAC 1 cut(s) 501
SaqAI TTAA 2 cut(s) 42, 401
SatI GCNGC 2 cut(s) 567, 697
Sau3AI GATC 2 cut(s) 18, 67
SchI GAGTC 2 cut(s) 185, 279
ScrFI CCNGG 1 cut(s) 710
SduI GDGCHC 3 cut(s) 427, 676, 743
SexAI ACCWGGT 1 cut(s) 708
SfaNI GCATC 1 cut(s) 129
SfcI CTRYAG 1 cut(s) 256
Sfr303I CCGCGG 1 cut(s) 570
SgrBI CCGCGG 1 cut(s) 570
SmiMI CAYNNNNRTG 2 cut(s) 207, 221
SmlI CTYRAG 1 cut(s) 666
SmoI CTYRAG 1 cut(s) 666
Sse9I AATT 3 cut(s) 519, 618, 655
SsiI CCGC 3 cut(s) 536, 567, 569
SspMI CTAG 3 cut(s) 324, 440, 597
StyD4I CCNGG 1 cut(s) 708
TaaI ACNGT 4 cut(s) 260, 282, 392, 646
TaqI TCGA 2 cut(s) 285, 502
TasI AATT 3 cut(s) 519, 618, 655
TatI WGTACW 1 cut(s) 277
TauI GCSGC 1 cut(s) 569
TfiI GAWTC 2 cut(s) 446, 748
Tru1I TTAA 2 cut(s) 42, 401
Tru9I TTAA 2 cut(s) 42, 401
TscAI CASTG 1 cut(s) 395
TseFI GTSAC 1 cut(s) 24
TseI GCWGC 1 cut(s) 696
Tsp45I GTSAC 1 cut(s) 24
TspDTI ATGAA 3 cut(s) 205, 378, 471
TspGWI ACGGA 3 cut(s) 31, 263, 616
TspRI CASTG 1 cut(s) 395
XapI RAATTY 2 cut(s) 618, 655
XbaI TCTAGA 1 cut(s) 596
XceI RCATGY 1 cut(s) 536
XmiI GTMKAC 1 cut(s) 502
XmnI GAANNNNTTC 1 cut(s) 111
XspI CTAG 3 cut(s) 324, 440, 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.