Rroxscaffold_2G00154760

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000073
Physical Location & Seq
Reverse (-)
91267395 .. 91269997
2603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00154760.1

Sequence Viewer

Length: 1353 bp
ATGCTTCTTCTCTATTCTCGGGCGCAGGCGCGGCGTGGAGGGGAATTCTCGCAGCGCCGTAGGCTTGGAGCAAGGGGCCGCAGGCTAGATCGTGGCGGCGGCGGCATGCCATGGATCGTATGGCGCCGGTCTCTGTTCGGAGGTTGGTTGCTCGGCGATGTTTGCGAGAGGTGGGTTCGGGCTCCCAAGCGGATGGACACGGATGGGTGGAGCGATTTCGTTCCGAGGTGGAAGGGCACGGTGATTCCCTTCTTATTTCTCGGTGGTTTGGATTGGAGTGAATTTTCCAAATCTAGATCCGGCGGCCGACAACAAGCGTGTGTATCGGTGTGGCTTGTCGTATTGATTGGGTATCTCCGGGGAGGTGAGCTAGAAGGGCAAGCTTTGTGGAGGTGGTCCGCCGGGGAAATTGGAGAGAGGGAAGTTGATTATAATAGCTTTGGTCCGGTCTTGTTTAGCGTTTTAATTTTGGTTAGGCTTTTGATTTCAACTTCGTATTATACTACCATTGAAGATGGACTCCTCTTCCTCTTCCGGACCGAGATCCCCCATGAGGATGAAGGGATTATCGAGGCAATGTCAATCTGTTTCGAGGATAATGCCTCTTTTATTGATATCCAAGAGGGTATCAACCTTCCGGGTATCCTAATAGCGGATGAGGAGCCGGGGTTGGAGGTGTCAAAGCTACTCGATGGGAATTTGGAAGTCCCTCGGACAAATCGAATTGAAGCCGGGTATGGTTCGGGGTCGGCTATTGAGGTGGAGGACCCCGCCATCCTTGGCAACGGGGGTACCTTAGATCGAGGGTGGATTTTGACACCAAGTAAACCCCTTGCAACTTTCATTCAACTACCTAGAGATAAGTCTCCTTCTTCCGTAATCCGCCTTCAATATGAGAACTTGAGAAGTTTCTCGTTTCAAGTGTGGCCGACTTGGACACATGATTTCTTCTTGCAGTATCAAGTAAACCCAATCCTTATCTCTCCGGGAGTACGCTACGACAACTCCTTGATTGCCGAGCCCCCCCAAAACCTCGTTTACACCCAAACTCGGTTCCCACCTAAGTATCCTTATGCTCCGACGACCGAATCTTTGGCGGAACAGGAGTGGGAGGAGGCCGACCAAGTTTTGAATTCTAGGAGTATGTGTGCCCCCGAAAGTGACAAGACAACATTGGCACACAATTCAACTTTGGATGTTGACTTGCCTCCTCAGTCCGCCACTCGCCCGTCTTGGTCATTGAGGGACAGGTCACTATCACCTAAGCGGCTACAAAGTCCTAGAATCCCTCCGGATGGACCACATCTTTGGGACCCGGATGCACATGGAACTTTTTTCGAAATGGCGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_3 zf-CCHC_4

Protein Analysis

450

Amino Acids

50.79

Weight (kDa)

5.18

Isoelectric Point (pI)

60.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 432
Acc65I GGTACC 1 cut(s) 791
AccB1I GGYRCC 2 cut(s) 123, 791
AccII CGCG 1 cut(s) 31
AccIII TCCGGA 2 cut(s) 534, 1291
AclWI GGATC 3 cut(s) 122, 291, 538
AcoI YGGCCR 2 cut(s) 304, 926
AcsI RAATTY 4 cut(s) 44, 281, 697, 1132
AcyI GRCGYC 1 cut(s) 124
AfaI GTAC 2 cut(s) 793, 993
AfiI CCNNNNNNNGG 4 cut(s) 553, 652, 1050, 1295
AgsI TTSAA 8 cut(s) 489, 512, 728, 848, 890, 920, 1132, 1188
AluBI AGCT 4 cut(s) 370, 383, 438, 685
AluI AGCT 4 cut(s) 370, 383, 438, 685
Alw26I GTCTC 2 cut(s) 135, 870
AlwI GGATC 3 cut(s) 122, 291, 538
Ama87I CYCGRG 1 cut(s) 18
Aor13HI TCCGGA 2 cut(s) 534, 1291
AoxI GGCC 4 cut(s) 76, 304, 926, 1116
ApeKI GCWGC 1 cut(s) 52
ApoI RAATTY 4 cut(s) 44, 281, 697, 1132
ArsI GACNNNNNNTTYG 4 cut(s) 1075, 1107, 1290, 1322
Asp718I GGTACC 1 cut(s) 791
AspLEI GCGC 4 cut(s) 25, 31, 57, 126
AspS9I GGNCC 7 cut(s) 76, 396, 443, 537, 766, 1298, 1312
AsuC2I CCSGG 7 cut(s) 359, 403, 639, 666, 733, 987, 1316
AsuHPI GGTGA 3 cut(s) 253, 377, 1251
AsuII TTCGAA 1 cut(s) 1338
AvaI CYCGRG 1 cut(s) 18
AvaII GGWCC 6 cut(s) 396, 443, 537, 766, 1298, 1312
BaeGI GKGCMC 2 cut(s) 239, 1153
BaeI ACNNNNGTAYC 4 cut(s) 775, 808, 1049, 1082
BanI GGYRCC 2 cut(s) 123, 791
BanII GRGCYC 2 cut(s) 184, 1023
BarI GAAGNNNNNNTAC 2 cut(s) 870, 902
BbvI GCAGC 1 cut(s) 64
BccI CCATC 6 cut(s) 187, 197, 509, 686, 782, 1289
BceAI ACGGC 1 cut(s) 42
BcgI CGANNNNNNTGC 2 cut(s) 581, 615
BciVI GTATCC 2 cut(s) 653, 1077
BcnI CCSGG 7 cut(s) 359, 403, 639, 666, 733, 987, 1316
BcoDI GTCTC 2 cut(s) 135, 870
BfaI CTAG 6 cut(s) 86, 294, 371, 855, 1137, 1281
BfoI RGCGCY 2 cut(s) 58, 127
BfuI GTATCC 2 cut(s) 653, 1077
BisI GCNGC 8 cut(s) 32, 53, 79, 97, 100, 103, 304, 1268
BlsI GCNGC 8 cut(s) 33, 54, 80, 98, 101, 104, 305, 1269
Bme1390I CCNGG 7 cut(s) 359, 403, 639, 666, 733, 987, 1316
Bme18I GGWCC 6 cut(s) 396, 443, 537, 766, 1298, 1312
BmeT110I CYCGRG 1 cut(s) 18
BmgT120I GGNCC 7 cut(s) 76, 396, 443, 537, 766, 1298, 1312
BmiI GGNNCC 9 cut(s) 77, 125, 183, 663, 768, 793, 1055, 1313, 1314
BmrFI CCNGG 7 cut(s) 359, 403, 639, 666, 733, 987, 1316
BmsI GCATC 1 cut(s) 1309
Bpu10I CCTNAGC 1 cut(s) 1263
Bpu14I TTCGAA 1 cut(s) 1338
BpuEI CTTGAG 1 cut(s) 922
BpuMI CCSGG 7 cut(s) 359, 403, 639, 666, 733, 987, 1316
BsaHI GRCGYC 1 cut(s) 124
BsaI GGTCTC 1 cut(s) 135
BsaJI CCNNGG 7 cut(s) 110, 224, 358, 402, 665, 710, 778
BsaWI WCCGGW 3 cut(s) 445, 534, 1291
BsaXI ACNNNNNCTCC 6 cut(s) 653, 683, 989, 1019, 1132, 1162
Bsc4I CCNNNNNNNGG 4 cut(s) 553, 652, 1050, 1295
Bse118I RCCGGY 1 cut(s) 126
Bse3DI GCAATG 1 cut(s) 582
BseAI TCCGGA 2 cut(s) 534, 1291
BseDI CCNNGG 7 cut(s) 110, 224, 358, 402, 665, 710, 778
BseGI GGATG 8 cut(s) 198, 208, 562, 661, 774, 1201, 1300, 1324
BseLI CCNNNNNNNGG 4 cut(s) 553, 652, 1050, 1295
BseMI GCAATG 1 cut(s) 582
BseMII CTCAG 1 cut(s) 1226
BseRI GAGGAG 4 cut(s) 512, 674, 1127, 1200
BseSI GKGCMC 2 cut(s) 239, 1153
BseX3I CGGCCG 1 cut(s) 304
BseXI GCAGC 1 cut(s) 64
Bsh1236I CGCG 1 cut(s) 31
Bsh1285I CGRYCG 2 cut(s) 307, 1086
BshFI GGCC 4 cut(s) 78, 306, 928, 1118
BshNI GGYRCC 2 cut(s) 123, 791
BsiEI CGRYCG 2 cut(s) 307, 1086
BsiHKCI CYCGRG 1 cut(s) 18
BslFI GGGAC 3 cut(s) 692, 1259, 1325
BslI CCNNNNNNNGG 4 cut(s) 553, 652, 1050, 1295
BsmAI GTCTC 2 cut(s) 135, 870
BsmFI GGGAC 3 cut(s) 692, 1259, 1325
BsnI GGCC 4 cut(s) 78, 306, 928, 1118
Bso31I GGTCTC 1 cut(s) 135
BsoBI CYCGRG 1 cut(s) 18
Bsp119I TTCGAA 1 cut(s) 1338
Bsp1286I GDGCHC 4 cut(s) 184, 239, 1023, 1153
Bsp13I TCCGGA 2 cut(s) 534, 1291
Bsp143I GATC 5 cut(s) 88, 114, 296, 543, 799
Bsp19I CCATGG 1 cut(s) 110
BspANI GGCC 4 cut(s) 78, 306, 928, 1118
BspCNI CTCAG 1 cut(s) 1225
BspEI TCCGGA 2 cut(s) 534, 1291
BspFNI CGCG 1 cut(s) 31
BspLI GGNNCC 9 cut(s) 77, 125, 183, 663, 768, 793, 1055, 1313, 1314
BspPI GGATC 3 cut(s) 122, 291, 538
BspT104I TTCGAA 1 cut(s) 1338
BspT107I GGYRCC 2 cut(s) 123, 791
BspTNI GGTCTC 1 cut(s) 135
BsrDI GCAATG 1 cut(s) 582
BsrFI RCCGGY 1 cut(s) 126
BssAI RCCGGY 1 cut(s) 126
BssECI CCNNGG 7 cut(s) 110, 224, 358, 402, 665, 710, 778
BssMI GATC 5 cut(s) 88, 114, 296, 543, 799
BssNI GRCGYC 1 cut(s) 124
BssT1I CCWWGG 2 cut(s) 110, 778
Bst4CI ACNGT 1 cut(s) 241
Bst6I CTCTTC 2 cut(s) 530, 536
BstACI GRCGYC 1 cut(s) 124
BstBI TTCGAA 1 cut(s) 1338
BstC8I GCNNGC 4 cut(s) 27, 83, 107, 381
BstDEI CTNAG 4 cut(s) 796, 1062, 1212, 1263
BstDSI CCRYGG 1 cut(s) 110
BstF5I GGATG 8 cut(s) 198, 208, 562, 661, 774, 1201, 1300, 1324
BstFNI CGCG 1 cut(s) 31
BstH2I RGCGCY 2 cut(s) 58, 127
BstHHI GCGC 4 cut(s) 25, 31, 57, 126
BstKTI GATC 5 cut(s) 91, 117, 299, 546, 802
BstMAI GTCTC 2 cut(s) 135, 870
BstMBI GATC 5 cut(s) 88, 114, 296, 543, 799
BstMCI CGRYCG 2 cut(s) 307, 1086
BstMWI GCNNNNNNNGC 5 cut(s) 31, 61, 102, 162, 376
BstNSI RCATGY 1 cut(s) 109
BstSCI CCNGG 7 cut(s) 357, 401, 637, 664, 731, 985, 1314
BstSLI GKGCMC 2 cut(s) 239, 1153
BstUI CGCG 1 cut(s) 31
BstV1I GCAGC 1 cut(s) 64
BstX2I RGATCY 2 cut(s) 296, 543
BstXI CCANNNNNNTGG 2 cut(s) 193, 1308
BstYI RGATCY 2 cut(s) 296, 543
BstZI CGGCCG 1 cut(s) 304
BsuI GTATCC 2 cut(s) 653, 1077
BsuRI GGCC 4 cut(s) 78, 306, 928, 1118
BtgI CCRYGG 1 cut(s) 110
BtgZI GCGATG 1 cut(s) 171
BtsCI GGATG 8 cut(s) 198, 208, 562, 661, 774, 1201, 1300, 1324
Cac8I GCNNGC 4 cut(s) 27, 83, 107, 381
CfoI GCGC 4 cut(s) 25, 31, 57, 126
Cfr10I RCCGGY 1 cut(s) 126
Cfr13I GGNCC 7 cut(s) 76, 396, 443, 537, 766, 1298, 1312
CpoI CGGWCCG 1 cut(s) 537
Csp6I GTAC 2 cut(s) 792, 992
CspCI CAANNNNNGTGG 2 cut(s) 368, 403
CspI CGGWCCG 1 cut(s) 537
CviAII CATG 5 cut(s) 106, 111, 551, 941, 1325
CviQI GTAC 2 cut(s) 792, 992
DdeI CTNAG 4 cut(s) 796, 1062, 1212, 1263
DinI GGCGCC 1 cut(s) 125
DpnI GATC 5 cut(s) 90, 116, 298, 545, 801
DpnII GATC 5 cut(s) 88, 114, 296, 543, 799
EaeI YGGCCR 2 cut(s) 304, 926
EagI CGGCCG 1 cut(s) 304
Eam1104I CTCTTC 2 cut(s) 530, 536
EarI CTCTTC 2 cut(s) 530, 536
EciI GGCGGA 4 cut(s) 388, 872, 1112, 1207
EclXI CGGCCG 1 cut(s) 304
Eco130I CCWWGG 2 cut(s) 110, 778
Eco24I GRGCYC 2 cut(s) 184, 1023
Eco31I GGTCTC 1 cut(s) 135
Eco32I GATATC 1 cut(s) 616
Eco47I GGWCC 6 cut(s) 396, 443, 537, 766, 1298, 1312
Eco52I CGGCCG 1 cut(s) 304
Eco88I CYCGRG 1 cut(s) 18
EcoO109I RGGNCCY 2 cut(s) 766, 1312
EcoRI GAATTC 2 cut(s) 44, 1132
EcoRV GATATC 1 cut(s) 616
EcoT14I CCWWGG 2 cut(s) 110, 778
EcoT38I GRGCYC 2 cut(s) 184, 1023
EgeI GGCGCC 1 cut(s) 125
EheI GGCGCC 1 cut(s) 125
ErhI CCWWGG 2 cut(s) 110, 778
FaeI CATG 5 cut(s) 109, 114, 554, 944, 1328
FaqI GGGAC 3 cut(s) 692, 1259, 1325
FatI CATG 5 cut(s) 105, 110, 550, 940, 1324
FauI CCCGC 1 cut(s) 778
Fnu4HI GCNGC 8 cut(s) 32, 53, 79, 97, 100, 103, 304, 1268
FokI GGATG 8 cut(s) 205, 215, 569, 668, 761, 1208, 1307, 1331
FriOI GRGCYC 2 cut(s) 184, 1023
Fsp4HI GCNGC 8 cut(s) 32, 53, 79, 97, 100, 103, 304, 1268
FspBI CTAG 6 cut(s) 86, 294, 371, 855, 1137, 1281
GlaI GCGC 4 cut(s) 24, 30, 56, 125
GluI GCNGC 8 cut(s) 32, 53, 79, 97, 100, 103, 304, 1268
HaeII RGCGCY 2 cut(s) 58, 127
HaeIII GGCC 4 cut(s) 78, 306, 928, 1118
HhaI GCGC 4 cut(s) 25, 31, 57, 126
Hin1I GRCGYC 1 cut(s) 124
Hin1II CATG 5 cut(s) 109, 114, 554, 944, 1328
Hin6I GCGC 4 cut(s) 23, 29, 55, 124
HinP1I GCGC 4 cut(s) 23, 29, 55, 124
HincII GTYRAC 1 cut(s) 1201
HindII GTYRAC 1 cut(s) 1201
HindIII AAGCTT 1 cut(s) 381
HinfI GANTC 4 cut(s) 244, 519, 1088, 1284
HphI GGTGA 3 cut(s) 253, 377, 1251
Hpy166II GTNNAC 4 cut(s) 827, 967, 1039, 1201
Hpy188I TCNGA 4 cut(s) 140, 225, 714, 1080
Hpy188III TCNNGA 3 cut(s) 294, 535, 1292
Hpy8I GTNNAC 4 cut(s) 827, 967, 1039, 1201
Hpy99I CGWCG 1 cut(s) 1084
HpyAV CCTTC 7 cut(s) 226, 259, 368, 554, 644, 879, 896
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4V TGCA 3 cut(s) 836, 955, 1322
HpyF10VI GCNNNNNNNGC 5 cut(s) 31, 61, 102, 162, 376
HpyF3I CTNAG 4 cut(s) 796, 1062, 1212, 1263
Hsp92I GRCGYC 1 cut(s) 124
Hsp92II CATG 5 cut(s) 109, 114, 554, 944, 1328
HspAI GCGC 4 cut(s) 23, 29, 55, 124
KasI GGCGCC 1 cut(s) 123
KflI GGGWCCC 1 cut(s) 1312
Kpn2I TCCGGA 2 cut(s) 534, 1291
KpnI GGTACC 1 cut(s) 795
Kzo9I GATC 5 cut(s) 88, 114, 296, 543, 799
LmnI GCTCC 5 cut(s) 68, 187, 210, 661, 1081
Lsp1109I GCAGC 1 cut(s) 64
LweI GCATC 1 cut(s) 1309
MaeI CTAG 6 cut(s) 86, 294, 371, 855, 1137, 1281
MaeIII GTNAC 2 cut(s) 1160, 1251
MalI GATC 5 cut(s) 90, 116, 298, 545, 801
MboI GATC 5 cut(s) 88, 114, 296, 543, 799
MboII GAAGA 5 cut(s) 517, 523, 524, 864, 940
MflI RGATCY 2 cut(s) 296, 543
MhlI GDGCHC 4 cut(s) 184, 239, 1023, 1153
MluCI AATT 8 cut(s) 44, 281, 408, 465, 697, 723, 1132, 1183
Mly113I GGCGCC 1 cut(s) 124
MlyI GAGTC 1 cut(s) 513
MmeI TCCRAC 2 cut(s) 651, 1103
MroI TCCGGA 2 cut(s) 534, 1291
MseI TTAA 1 cut(s) 464
MslI CAYNNNNRTG 1 cut(s) 555
MspR9I CCNGG 7 cut(s) 359, 403, 639, 666, 733, 987, 1316
MvnI CGCG 1 cut(s) 31
MwoI GCNNNNNNNGC 5 cut(s) 31, 61, 102, 162, 376
NarI GGCGCC 1 cut(s) 124
NciI CCSGG 7 cut(s) 359, 403, 639, 666, 733, 987, 1316
NcoI CCATGG 1 cut(s) 110
NdeII GATC 5 cut(s) 88, 114, 296, 543, 799
NlaIII CATG 5 cut(s) 109, 114, 554, 944, 1328
NlaIV GGNNCC 9 cut(s) 77, 125, 183, 663, 768, 793, 1055, 1313, 1314
NmeAIII GCCGAG 2 cut(s) 132, 1042
NmuCI GTSAC 2 cut(s) 1160, 1251
NspI RCATGY 1 cut(s) 109
NspV TTCGAA 1 cut(s) 1338
PaeI GCATGC 1 cut(s) 109
PcsI WCGNNNNNNNCGW 1 cut(s) 718
PfeI GAWTC 3 cut(s) 244, 1088, 1284
PfoI TCCNGGA 1 cut(s) 985
PkrI GCNGC 8 cut(s) 33, 54, 80, 98, 101, 104, 305, 1269
PleI GAGTC 1 cut(s) 513
PluTI GGCGCC 1 cut(s) 127
PpsI GAGTC 1 cut(s) 513
PpuMI RGGWCCY 2 cut(s) 766, 1312
PsiI TTATAA 1 cut(s) 432
Psp5II RGGWCCY 2 cut(s) 766, 1312
PspN4I GGNNCC 9 cut(s) 77, 125, 183, 663, 768, 793, 1055, 1313, 1314
PspPI GGNCC 7 cut(s) 76, 396, 443, 537, 766, 1298, 1312
PspPPI RGGWCCY 2 cut(s) 766, 1312
PsuI RGATCY 2 cut(s) 296, 543
RsaI GTAC 2 cut(s) 793, 993
RsaNI GTAC 2 cut(s) 792, 992
RseI CAYNNNNRTG 1 cut(s) 555
Rsr2I CGGWCCG 1 cut(s) 537
RsrII CGGWCCG 1 cut(s) 537
SaqAI TTAA 1 cut(s) 464
SatI GCNGC 8 cut(s) 32, 53, 79, 97, 100, 103, 304, 1268
Sau3AI GATC 5 cut(s) 88, 114, 296, 543, 799
Sau96I GGNCC 7 cut(s) 76, 396, 443, 537, 766, 1298, 1312
SchI GAGTC 1 cut(s) 513
ScrFI CCNGG 7 cut(s) 359, 403, 639, 666, 733, 987, 1316
SduI GDGCHC 4 cut(s) 184, 239, 1023, 1153
SfaNI GCATC 1 cut(s) 1309
SfoI GGCGCC 1 cut(s) 125
SfuI TTCGAA 1 cut(s) 1338
SinI GGWCC 6 cut(s) 396, 443, 537, 766, 1298, 1312
SmiMI CAYNNNNRTG 1 cut(s) 555
SmlI CTYRAG 1 cut(s) 901
SmoI CTYRAG 1 cut(s) 901
SphI GCATGC 1 cut(s) 109
Sse9I AATT 8 cut(s) 44, 281, 408, 465, 697, 723, 1132, 1183
SspDI GGCGCC 1 cut(s) 123
SspMI CTAG 6 cut(s) 86, 294, 371, 855, 1137, 1281
StyD4I CCNGG 7 cut(s) 357, 401, 637, 664, 731, 985, 1314
StyI CCWWGG 2 cut(s) 110, 778
TaaI ACNGT 1 cut(s) 241
TaqI TCGA 6 cut(s) 570, 591, 690, 721, 802, 1338
TaqII GACCGA 2 cut(s) 554, 1100
TasI AATT 8 cut(s) 44, 281, 408, 465, 697, 723, 1132, 1183
TauI GCSGC 7 cut(s) 34, 81, 99, 102, 105, 306, 1270
TfiI GAWTC 3 cut(s) 244, 1088, 1284
Tru1I TTAA 1 cut(s) 464
Tru9I TTAA 1 cut(s) 464
TseFI GTSAC 2 cut(s) 1160, 1251
TseI GCWGC 1 cut(s) 52
Tsp45I GTSAC 2 cut(s) 1160, 1251
TspDTI ATGAA 2 cut(s) 573, 832
TspGWI ACGGA 2 cut(s) 215, 865
VpaK11BI GGWCC 6 cut(s) 396, 443, 537, 766, 1298, 1312
XapI RAATTY 4 cut(s) 44, 281, 697, 1132
XbaI TCTAGA 1 cut(s) 293
XceI RCATGY 1 cut(s) 109
XcmI CCANNNNNNNNNTGG 1 cut(s) 117
XspI CTAG 6 cut(s) 86, 294, 371, 855, 1137, 1281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.