Rh6DG263700

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000073
Physical Location & Seq
Forward (+)
45554007 .. 45555467
1461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG263700.1

Sequence Viewer

Length: 1461 bp
ATGGGCTCACACGACCATTTGGCGGCACTTTTGGAAGATAAGCTGAATATTGATGATGTCCAACAACCTGCTCTCCTCATGGGGGCCTTCATTGCTGATGAGTCATTTAATATTGGAGGGATAAAAGGATCTCTGCGAACTTCTTGGAGGGGTCTTGGCAGCTTCAAGATTTCGCATTTAAGAAGGAATCTCTTCTCCATCCAGATGAATCAAGAAGGTGCTAAAAAAGTCCTTGAGGGTGGTCCCTGGCATGTTGATAACCACCGCTTCAATGTTGTTCCCTGGCCATCTAATTGTACTATCAATGATATTCCTTACCACATGGTAACCTATTGGGTACGTATATCTGGCCTTACACCTGAGAAGATGATTATGAGCAATGCAAGGCTCATTGGGTCAGAAATCGGAGAAGTGGTCGAGATGGAGGATATCTCGTCGGAGGAAGCCTTTCTACGAGGTTATCTGCGTATCAGAATCAGTATGGATTCTAGAAAGCCTTTCCCAACTGGCTTTTGGCTTCCCACCTCCGATAACAAGAGTGTTCGTGTGGAGTATAAGTATGAAGGTCTTTGCATTTTCTGCTGGAAATGTGGCAAACTAGGCCACACCATGAATGATTGCAGAATTTCCATCGTCCTTAGTCCATCAAAGGAGAGGCATGAAAATATTTGGTATGGTCCTTGGATGGCCTACAAGGCATCAAAACCATCATCCAGCTTTGATCAATCGAAGACGGTTCATCGGAAACGACCGGCATTACATCGTTTCAGTGGTGAAGACCGTTTTACCCTGTCTACTACCACAAAAGATACTCTTCACCACCAATCAGGTACTAAGGTTACTAGGTTGAATTCAAATTTTCCTAGTACTTCGTTTACTGTGCAACCTTGTGCTCCCTACCCAAGGCATGATGGTGATTTATCTATCACGGGCTCTGTTGCAAGCGGTTCCTTTGCTGAATCGAACATAAATGCTGCTGCTTCTTTTGGTAACGGTGACGCAACGGGAAACAAGGGTGGTGGGGTTACTAGCTCTGTTGATTGCCCAAGTCCTAATTGTTACAAGCTGGCAATCACTACTGCCACTACCCATGTGCAATGGACAAAGAAGATTAGAAAGCCCAATTCTCATGCCCATCATCATACCCCTTGTGCTCCCACTTCCCCAAATAAGCCCATTTCCATTTCTGTCTCAATTGACACAACCAAGCCCATCCCAACTCCATTACACCTCACGTATCCAAAAAATCACCTTCATCAGGATCGGCCTTTGTTAGAACTACCAACCTCTCGACCAAAAATTGATAATACCACTGTTATTCCAATCCCGCATCCTCTTCGACTTGCAACTAAATCTCGAAGTTTCACCAACTCCCCTCTTAGGTCCCATGACTTGGCCATCAGAAATCACACCTTCTCTTCAAATAACCCAGACCATATTTTCAAACCCAAAGAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4 zf-RING_2

Protein Analysis

486

Amino Acids

54.26

Weight (kDa)

9.32

Isoelectric Point (pI)

40.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 26 - 100 1.4e-08 Domain of unknown function (DUF4283)
zf-CCHC_4 PF14392 177 - 208 4.3e-07 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 76
AccB7I CCANNNNNTGG 1 cut(s) 1393
AccI GTMKAC 1 cut(s) 794
AciI CCGC 4 cut(s) 23, 265, 945, 1328
AclWI GGATC 2 cut(s) 136, 1269
AcoI YGGCCR 2 cut(s) 284, 1395
AcsI RAATTY 3 cut(s) 624, 850, 856
AfaI GTAC 4 cut(s) 298, 339, 832, 868
AfiI CCNNNNNNNGG 6 cut(s) 22, 82, 903, 1258, 1380, 1393
AgsI TTSAA 6 cut(s) 166, 271, 850, 855, 1422, 1444
AjnI CCWGG 2 cut(s) 245, 281
AluBI AGCT 5 cut(s) 43, 162, 717, 1032, 1066
AluI AGCT 5 cut(s) 43, 162, 717, 1032, 1066
Alw21I GWGCWC 2 cut(s) 895, 1156
Alw26I GTCTC 1 cut(s) 1195
AlwI GGATC 2 cut(s) 136, 1269
AoxI GGCC 7 cut(s) 84, 284, 349, 601, 687, 1265, 1395
ApeKI GCWGC 3 cut(s) 159, 974, 977
ApoI RAATTY 3 cut(s) 624, 850, 856
Asp700I GAANNNNTTC 2 cut(s) 191, 447
AspS9I GGNCC 4 cut(s) 84, 242, 677, 1383
AsuHPI GGTGA 6 cut(s) 785, 809, 926, 1007, 1241, 1357
AvaII GGWCC 3 cut(s) 242, 677, 1383
BaeI ACNNNNGTAYC 2 cut(s) 822, 855
BalI TGGCCA 2 cut(s) 286, 1397
BanII GRGCYC 2 cut(s) 8, 935
BarI GAAGNNNNNNTAC 2 cut(s) 435, 467
BbsI GAAGAC 2 cut(s) 737, 783
Bbv12I GWGCWC 2 cut(s) 895, 1156
BbvI GCAGC 3 cut(s) 171, 961, 964
BcgI CGANNNNNNTGC 2 cut(s) 1319, 1353
BciT130I CCWGG 2 cut(s) 247, 283
BciVI GTATCC 1 cut(s) 1248
BclI TGATCA 1 cut(s) 721
BcoDI GTCTC 1 cut(s) 1195
BfaI CTAG 5 cut(s) 489, 599, 843, 864, 1029
BfuAI ACCTGC 1 cut(s) 76
BfuI GTATCC 1 cut(s) 1248
BglI GCCNNNNNGGC 1 cut(s) 695
BisI GCNGC 4 cut(s) 24, 160, 975, 978
BlsI GCNGC 4 cut(s) 25, 161, 976, 979
BmcAI AGTACT 1 cut(s) 868
Bme1390I CCNGG 2 cut(s) 247, 283
Bme18I GGWCC 3 cut(s) 242, 677, 1383
BmgT120I GGNCC 4 cut(s) 84, 242, 677, 1383
BmiI GGNNCC 4 cut(s) 85, 244, 949, 1385
BmrFI CCNGG 2 cut(s) 247, 283
BmsI GCATC 2 cut(s) 707, 1339
BpiI GAAGAC 2 cut(s) 737, 783
BplI GAGNNNNNCTC 2 cut(s) 416, 448
BpuEI CTTGAG 1 cut(s) 254
BsaAI YACGTR 2 cut(s) 341, 1236
BsaJI CCNNGG 4 cut(s) 245, 281, 680, 902
BsaXI ACNNNNNCTCC 6 cut(s) 57, 87, 399, 429, 542, 572
Bsc4I CCNNNNNNNGG 6 cut(s) 22, 82, 903, 1258, 1380, 1393
Bse118I RCCGGY 1 cut(s) 751
Bse1I ACTGG 1 cut(s) 511
Bse3DI GCAATG 3 cut(s) 90, 385, 1103
BseBI CCWGG 2 cut(s) 247, 283
BseDI CCNNGG 4 cut(s) 245, 281, 680, 902
BseGI GGATG 5 cut(s) 198, 690, 710, 1212, 1330
BseLI CCNNNNNNNGG 6 cut(s) 22, 82, 903, 1258, 1380, 1393
BseMI GCAATG 3 cut(s) 90, 385, 1103
BseMII CTCAG 1 cut(s) 351
BseNI ACTGG 1 cut(s) 511
BseRI GAGGAG 1 cut(s) 65
BseXI GCAGC 3 cut(s) 171, 961, 964
Bsh1285I CGRYCG 1 cut(s) 752
BshFI GGCC 7 cut(s) 86, 286, 351, 603, 689, 1267, 1397
BsiEI CGRYCG 1 cut(s) 752
BsiHKAI GWGCWC 2 cut(s) 895, 1156
BsiSI CCGG 1 cut(s) 752
BslFI GGGAC 2 cut(s) 228, 1369
BslI CCNNNNNNNGG 6 cut(s) 22, 82, 903, 1258, 1380, 1393
BsmAI GTCTC 1 cut(s) 1195
BsmFI GGGAC 2 cut(s) 228, 1369
BsnI GGCC 7 cut(s) 86, 286, 351, 603, 689, 1267, 1397
Bsp1286I GDGCHC 4 cut(s) 8, 895, 935, 1156
Bsp143I GATC 3 cut(s) 128, 721, 1261
BspACI CCGC 4 cut(s) 23, 265, 945, 1328
BspANI GGCC 7 cut(s) 86, 286, 351, 603, 689, 1267, 1397
BspCNI CTCAG 1 cut(s) 352
BspLI GGNNCC 4 cut(s) 85, 244, 949, 1385
BspMI ACCTGC 1 cut(s) 76
BspPI GGATC 2 cut(s) 136, 1269
BsrDI GCAATG 3 cut(s) 90, 385, 1103
BsrFI RCCGGY 1 cut(s) 751
BsrI ACTGG 1 cut(s) 511
BssAI RCCGGY 1 cut(s) 751
BssECI CCNNGG 4 cut(s) 245, 281, 680, 902
BssMI GATC 3 cut(s) 128, 721, 1261
BssT1I CCWWGG 2 cut(s) 680, 902
Bst2UI CCWGG 2 cut(s) 247, 283
Bst4CI ACNGT 5 cut(s) 736, 782, 880, 995, 1315
Bst6I CTCTTC 4 cut(s) 197, 819, 1341, 1423
BstAPI GCANNNNNTGC 1 cut(s) 579
BstBAI YACGTR 2 cut(s) 341, 1236
BstC8I GCNNGC 2 cut(s) 943, 1068
BstDEI CTNAG 4 cut(s) 360, 638, 834, 1379
BstEII GGTNACC 1 cut(s) 325
BstENI CCTNNNNNAGG 2 cut(s) 901, 1256
BstF5I GGATG 5 cut(s) 198, 690, 710, 1212, 1330
BstKTI GATC 3 cut(s) 131, 724, 1264
BstMAI GTCTC 1 cut(s) 1195
BstMBI GATC 3 cut(s) 128, 721, 1261
BstMCI CGRYCG 1 cut(s) 752
BstMWI GCNNNNNNNGC 4 cut(s) 92, 579, 600, 695
BstNI CCWGG 2 cut(s) 247, 283
BstNSI RCATGY 1 cut(s) 254
BstPI GGTNACC 1 cut(s) 325
BstSCI CCNGG 2 cut(s) 245, 281
BstSNI TACGTA 1 cut(s) 341
BstV1I GCAGC 3 cut(s) 171, 961, 964
BstV2I GAAGAC 2 cut(s) 737, 783
BstX2I RGATCY 1 cut(s) 128
BstYI RGATCY 1 cut(s) 128
BsuI GTATCC 1 cut(s) 1248
BsuRI GGCC 7 cut(s) 86, 286, 351, 603, 689, 1267, 1397
BtsCI GGATG 5 cut(s) 198, 690, 710, 1212, 1330
BtsIMutI CAGTG 2 cut(s) 775, 1311
BveI ACCTGC 1 cut(s) 76
Cac8I GCNNGC 2 cut(s) 943, 1068
Cfr10I RCCGGY 1 cut(s) 751
Cfr13I GGNCC 4 cut(s) 84, 242, 677, 1383
CseI GACGC 1 cut(s) 1007
Csp6I GTAC 4 cut(s) 297, 338, 831, 867
CspCI CAANNNNNGTGG 2 cut(s) 1000, 1035
CviAII CATG 9 cut(s) 79, 251, 322, 610, 659, 908, 1091, 1130, 1388
CviQI GTAC 4 cut(s) 297, 338, 831, 867
DdeI CTNAG 4 cut(s) 360, 638, 834, 1379
DpnI GATC 3 cut(s) 130, 723, 1263
DpnII GATC 3 cut(s) 128, 721, 1261
EaeI YGGCCR 2 cut(s) 284, 1395
Eam1104I CTCTTC 4 cut(s) 197, 819, 1341, 1423
EarI CTCTTC 4 cut(s) 197, 819, 1341, 1423
Eco105I TACGTA 1 cut(s) 341
Eco130I CCWWGG 2 cut(s) 680, 902
Eco24I GRGCYC 2 cut(s) 8, 935
Eco32I GATATC 1 cut(s) 430
Eco47I GGWCC 3 cut(s) 242, 677, 1383
Eco91I GGTNACC 1 cut(s) 325
EcoNI CCTNNNNNAGG 2 cut(s) 901, 1256
EcoO109I RGGNCCY 2 cut(s) 84, 1383
EcoO65I GGTNACC 1 cut(s) 325
EcoRI GAATTC 1 cut(s) 850
EcoRII CCWGG 2 cut(s) 245, 281
EcoRV GATATC 1 cut(s) 430
EcoT14I CCWWGG 2 cut(s) 680, 902
EcoT38I GRGCYC 2 cut(s) 8, 935
ErhI CCWWGG 2 cut(s) 680, 902
FaeI CATG 9 cut(s) 82, 254, 325, 613, 662, 911, 1094, 1133, 1391
FalI AAGNNNNNCTT 2 cut(s) 798, 830
FaqI GGGAC 2 cut(s) 228, 1369
FatI CATG 9 cut(s) 78, 250, 321, 609, 658, 907, 1090, 1129, 1387
FauI CCCGC 1 cut(s) 1335
FbaI TGATCA 1 cut(s) 721
FblI GTMKAC 1 cut(s) 794
Fnu4HI GCNGC 4 cut(s) 24, 160, 975, 978
FokI GGATG 5 cut(s) 185, 697, 697, 1199, 1317
FriOI GRGCYC 2 cut(s) 8, 935
Fsp4HI GCNGC 4 cut(s) 24, 160, 975, 978
FspBI CTAG 5 cut(s) 489, 599, 843, 864, 1029
GluI GCNGC 4 cut(s) 24, 160, 975, 978
HaeIII GGCC 7 cut(s) 86, 286, 351, 603, 689, 1267, 1397
HapII CCGG 1 cut(s) 752
HgaI GACGC 1 cut(s) 1007
Hin1II CATG 9 cut(s) 82, 254, 325, 613, 662, 911, 1094, 1133, 1391
HinfI GANTC 6 cut(s) 101, 187, 208, 474, 485, 959
HpaII CCGG 1 cut(s) 752
HphI GGTGA 6 cut(s) 785, 809, 926, 1007, 1241, 1357
Hpy166II GTNNAC 2 cut(s) 795, 876
Hpy188I TCNGA 7 cut(s) 400, 407, 439, 473, 529, 744, 1403
Hpy188III TCNNGA 8 cut(s) 166, 202, 212, 418, 489, 1259, 1290, 1356
Hpy8I GTNNAC 2 cut(s) 795, 876
Hpy99I CGWCG 1 cut(s) 439
HpyAV CCTTC 6 cut(s) 97, 177, 209, 557, 1262, 1423
HpyCH4III ACNGT 5 cut(s) 736, 782, 880, 995, 1315
HpyCH4IV ACGT 2 cut(s) 340, 1235
HpyCH4V TGCA 7 cut(s) 383, 573, 621, 883, 941, 1096, 1346
HpyF10VI GCNNNNNNNGC 4 cut(s) 92, 579, 600, 695
HpyF3I CTNAG 4 cut(s) 360, 638, 834, 1379
HpySE526I ACGT 2 cut(s) 340, 1235
Hsp92II CATG 9 cut(s) 82, 254, 325, 613, 662, 911, 1094, 1133, 1391
Ksp22I TGATCA 1 cut(s) 721
Kzo9I GATC 3 cut(s) 128, 721, 1261
LmnI GCTCC 2 cut(s) 898, 1159
Lsp1109I GCAGC 3 cut(s) 171, 961, 964
LweI GCATC 2 cut(s) 707, 1339
MaeI CTAG 5 cut(s) 489, 599, 843, 864, 1029
MaeII ACGT 2 cut(s) 340, 1235
MaeIII GTNAC 6 cut(s) 325, 838, 989, 995, 1024, 1058
MalI GATC 3 cut(s) 130, 723, 1263
MboI GATC 3 cut(s) 128, 721, 1261
MboII GAAGA 9 cut(s) 47, 184, 376, 742, 788, 806, 1120, 1328, 1410
MfeI CAATTG 1 cut(s) 1194
MflI RGATCY 1 cut(s) 128
MhlI GDGCHC 4 cut(s) 8, 895, 935, 1156
MlsI TGGCCA 2 cut(s) 286, 1397
MluCI AATT 8 cut(s) 292, 624, 850, 856, 1054, 1123, 1194, 1299
MluNI TGGCCA 2 cut(s) 286, 1397
MlyI GAGTC 1 cut(s) 110
MmeI TCCRAC 2 cut(s) 85, 417
Mox20I TGGCCA 2 cut(s) 286, 1397
MroXI GAANNNNTTC 2 cut(s) 191, 447
MscI TGGCCA 2 cut(s) 286, 1397
MseI TTAA 2 cut(s) 108, 179
MslI CAYNNNNRTG 2 cut(s) 203, 912
Msp20I TGGCCA 2 cut(s) 286, 1397
MspI CCGG 1 cut(s) 752
MspR9I CCNGG 2 cut(s) 247, 283
MunI CAATTG 1 cut(s) 1194
MvaI CCWGG 2 cut(s) 247, 283
MwoI GCNNNNNNNGC 4 cut(s) 92, 579, 600, 695
NdeII GATC 3 cut(s) 128, 721, 1261
NlaIII CATG 9 cut(s) 82, 254, 325, 613, 662, 911, 1094, 1133, 1391
NlaIV GGNNCC 4 cut(s) 85, 244, 949, 1385
NmuCI GTSAC 1 cut(s) 995
NspI RCATGY 1 cut(s) 254
PdmI GAANNNNTTC 2 cut(s) 191, 447
PfeI GAWTC 5 cut(s) 187, 208, 474, 485, 959
PflMI CCANNNNNTGG 1 cut(s) 1393
PkrI GCNGC 4 cut(s) 25, 161, 976, 979
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
Ppu21I YACGTR 2 cut(s) 341, 1236
PpuMI RGGWCCY 1 cut(s) 1383
Psp5II RGGWCCY 1 cut(s) 1383
Psp6I CCWGG 2 cut(s) 245, 281
PspEI GGTNACC 1 cut(s) 325
PspGI CCWGG 2 cut(s) 245, 281
PspN4I GGNNCC 4 cut(s) 85, 244, 949, 1385
PspPI GGNCC 4 cut(s) 84, 242, 677, 1383
PspPPI RGGWCCY 1 cut(s) 1383
PsuI RGATCY 1 cut(s) 128
RsaI GTAC 4 cut(s) 298, 339, 832, 868
RsaNI GTAC 4 cut(s) 297, 338, 831, 867
RseI CAYNNNNRTG 2 cut(s) 203, 912
SaqAI TTAA 2 cut(s) 108, 179
SatI GCNGC 4 cut(s) 24, 160, 975, 978
Sau3AI GATC 3 cut(s) 128, 721, 1261
Sau96I GGNCC 4 cut(s) 84, 242, 677, 1383
ScaI AGTACT 1 cut(s) 868
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 2 cut(s) 247, 283
SduI GDGCHC 4 cut(s) 8, 895, 935, 1156
SfaNI GCATC 2 cut(s) 707, 1339
SinI GGWCC 3 cut(s) 242, 677, 1383
SmiMI CAYNNNNRTG 2 cut(s) 203, 912
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
SnaBI TACGTA 1 cut(s) 341
Sse9I AATT 8 cut(s) 292, 624, 850, 856, 1054, 1123, 1194, 1299
SsiI CCGC 4 cut(s) 23, 265, 945, 1328
SspI AATATT 3 cut(s) 49, 112, 667
SspMI CTAG 5 cut(s) 489, 599, 843, 864, 1029
StyD4I CCNGG 2 cut(s) 245, 281
StyI CCWWGG 2 cut(s) 680, 902
TaaI ACNGT 5 cut(s) 736, 782, 880, 995, 1315
TaiI ACGT 2 cut(s) 343, 1238
TaqI TCGA 6 cut(s) 417, 728, 962, 1291, 1339, 1357
TasI AATT 8 cut(s) 292, 624, 850, 856, 1054, 1123, 1194, 1299
TatI WGTACW 2 cut(s) 296, 866
TauI GCSGC 1 cut(s) 26
TfiI GAWTC 5 cut(s) 187, 208, 474, 485, 959
Tru1I TTAA 2 cut(s) 108, 179
Tru9I TTAA 2 cut(s) 108, 179
TscAI CASTG 2 cut(s) 775, 1318
TseFI GTSAC 1 cut(s) 995
TseI GCWGC 3 cut(s) 159, 974, 977
Tsp45I GTSAC 1 cut(s) 995
TspDTI ATGAA 7 cut(s) 79, 221, 576, 626, 675, 728, 1244
TspRI CASTG 2 cut(s) 775, 1318
Van91I CCANNNNNTGG 1 cut(s) 1393
VpaK11BI GGWCC 3 cut(s) 242, 677, 1383
XagI CCTNNNNNAGG 2 cut(s) 901, 1256
XapI RAATTY 3 cut(s) 624, 850, 856
XbaI TCTAGA 1 cut(s) 488
XceI RCATGY 1 cut(s) 254
XcmI CCANNNNNNNNNTGG 1 cut(s) 510
XmiI GTMKAC 1 cut(s) 794
XmnI GAANNNNTTC 2 cut(s) 191, 447
XspI CTAG 5 cut(s) 489, 599, 843, 864, 1029
ZrmI AGTACT 1 cut(s) 868
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.