FvH4_3g21493

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000073
Physical Location & Seq
Reverse (-)
14605881 .. 14608365
2485 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g21493.t1

Sequence Viewer

Length: 2082 bp
ATGAACCAAAAGAATGTTGAGATGATTGGTGCTGAGATTGAGACTGTTCTGGAGCTTGAAGACTCCTCGGTGGATTTAAAGTTGAGGGGTTTTCTTAGAGTCAAGGTCCTGATCGACTCTAGAAATCCTTTGCCCACCAGTTTCTGGTTGCCGCTGAACTCCTACACAAAAACTAGGGTGGAGTTCGCTTATGAGGGGCTGAGAGATTTTTGCTACAAGTGCAGTAGACTGGGTCATAACATGGCTGGCTGGAAAAATCTACACCTAGTTTGCCCAGAGGAAGTCGAAAGTGAAATCCAGTGGTATGGTCCGTGGATGAGGAAGGGTGTTTCTTCCAAGAAGCAACAGTCGTGGTTGGACAGGCCGGCGAGTAATGCAGCGAGTTTGAATGAGCCTTGTGTCAGGGAGTCTGAGATTGTGGTCCATGCTGGGGAACTTTCAAATTTGGCTTTGGCTTTTGTGAGCCCTAGAAGCTATGACCCCTCTCCTGTCACTGTTGATGCTCTGAACTTTGTACAAAGCCAGGGTTCAAATTTTGATGCCACCCTCGTGACCTCTTCCAACCCCAGGCTTCGGGCTTGGTTTTCATCTATGAATTCCAGCTATGCCTTGTCTGAGTCTTTTCCTAGCCCTAATTGGTTAAAGATTGCCATCATCTCGGCGAAAACCAATGAAGAGTGGGCCCTAAAGTGCTCTATCATATCCTCAAGGCCCATTTCGCACTCTCAGTCTCAAGATTGCCATCCCAGGCCCAGCCTTGCTTTACCCTGCTCACATTTTATCAATTTAGGCCTTTCCCGACTTGGGCCCTTGTCTTCTAAGCCCATTCTCACCCTCTCCCCTATCAACACAAACCCTCTTTCACTTAACCCCGATTCACTTAACCATATTCCAATCATTGGTGAACTTCCCTTGCCGCAAATCCATAACCCCAAACTTGTTTCCCCATCTTCTTCTGTGCTCTCACCTCCACCCTCTATCCAATCCAACCATGTCCAAAATCCAGGTCTTGATGTGTCGGGGTCCAAAACAAAGCTTTTATCGTCTCTGGAGGCTTCGGTACATGGATCTTTACCTGGGGTTAGAAGAGAAGTTTATAGGCAGCGGAAGAAGCCTGGGTTTAGGACTGAGGCGGCTGGAGGAGCAATCCTCTCTCCAGGGCGGTGGTGGCTGTCCTACAGCCATAAGGAGTCAATGAGTCAAATCCTTTCCTGGAACTGTCATGGTCTAGGACGAGCCTTGACAGTCCAGAAACTTGGACAGCTCATTCGCTCTCATTCGCCGTCCGTGTGGCGCCCTGAAGTTGATGTTGAGATTATTTTCAGGAGTCAGAATTTGATTGATACTGTGATTAAGTTCTCTTCAGTCGATGCTCCTACTCGGGTCACTTTCTTCTATGGCCCTCCTTACAATGAAGACAAGCTTCCTTTATGGTCCTCAATTGAGAATCTTGCTTTTTCTAATCCTAGTGCTTGGGTCTGGATTGGGGATTTTAATGAAATTGTTTCCATGGATGAGAAGGAGGGAGGTGTTTCCTGGAGTTGGAGTAGAACTCGTTTTTTGAAGAATTTTATGGACAACAATAGTTTACTTGATCTCCATTTCACAGGTCCTCGCCTCACATGGGAAAACAGGCGAGAAGATGTCAATGAGATTATCAGGGAGCGTTTGGACCGAGCAATTGAGAATGCTGAATGGCTTCATGATTGGCCGAAGTCTTTTGTCAAACATAAACCGAGAATTGGGTCACATCATTGCCCTATGATTCTATACTTCCAGGCAAAAGTAGAGAGATTTAAAAAGCCTTTCAGCTTTGAGGCCAGTTGGGTGAAGGATCCGGATTATGATGAAGTAGCGGCTGCTTGTTGGAAGTCGGAGTGCTCTGATCCTTTTTGGAGATGGAGTGAGAATCTGGAATCTTGCAAATTTGATTTAGCTAGGTGGAGCAAGGTCAAGTTTCCAAATAACAAGCTTCGTGTTGAGAGTCTCCAAAATGACCTTCTATCTTTACAAGAGGGTTCGGTCTTGTGTGACTCGAAGGAAAAGGAGCAGGCTTTGCTTCAGGAGATAAACCACACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

694

Amino Acids

78.63

Weight (kDa)

7.6

Isoelectric Point (pI)

54.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 38 - 82 6.1e-07 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1293
AccB7I CCANNNNNTGG 2 cut(s) 144, 899
AccI GTMKAC 1 cut(s) 226
AccIII TCCGGA 1 cut(s) 1837
AciI CCGC 6 cut(s) 152, 917, 1105, 1133, 1162, 1856
AclWI GGATC 4 cut(s) 1075, 1829, 1842, 1880
AcoI YGGCCR 1 cut(s) 1709
AcsI RAATTY 6 cut(s) 442, 532, 595, 1333, 1567, 1925
AcuI CTGAAG 3 cut(s) 1320, 1347, 2045
AcyI GRCGYC 1 cut(s) 1294
AfaI GTAC 2 cut(s) 516, 1062
AfiI CCNNNNNNNGG 9 cut(s) 144, 430, 567, 573, 804, 899, 1542, 1624, 1742
AgsI TTSAA 5 cut(s) 59, 388, 441, 531, 1564
AjuI GAANNNNNNNTTGG 2 cut(s) 1983, 2015
AleI CACNNNNGTG 1 cut(s) 548
AluBI AGCT 9 cut(s) 55, 474, 603, 1036, 1264, 1423, 1812, 1937, 1972
AluI AGCT 9 cut(s) 55, 474, 603, 1036, 1264, 1423, 1812, 1937, 1972
Alw21I GWGCWC 3 cut(s) 695, 963, 1883
Alw26I GTCTC 4 cut(s) 35, 735, 1050, 1991
AlwI GGATC 4 cut(s) 1075, 1829, 1842, 1880
AlwNI CAGNNNCTG 1 cut(s) 144
Ama87I CYCGRG 1 cut(s) 1380
Aor13HI TCCGGA 1 cut(s) 1837
AoxI GGCC 9 cut(s) 362, 681, 710, 749, 790, 806, 1399, 1709, 1818
ApaI GGGCCC 2 cut(s) 685, 810
ApeKI GCWGC 3 cut(s) 377, 1102, 1859
ApoI RAATTY 6 cut(s) 442, 532, 595, 1333, 1567, 1925
ArsI GACNNNNNNTTYG 4 cut(s) 991, 1023, 1251, 1283
Asp700I GAANNNNTTC 1 cut(s) 1698
AspLEI GCGC 1 cut(s) 1296
AsuHPI GGTGA 4 cut(s) 823, 914, 957, 1840
AvaI CYCGRG 1 cut(s) 1380
AvaII GGWCC 7 cut(s) 106, 308, 421, 1023, 1434, 1610, 1672
BaeGI GKGCMC 2 cut(s) 685, 810
BamHI GGATCC 1 cut(s) 1834
BanI GGYRCC 1 cut(s) 1293
BanII GRGCYC 3 cut(s) 467, 685, 810
BauI CACGAG 1 cut(s) 548
BbsI GAAGAC 3 cut(s) 66, 807, 1422
Bbv12I GWGCWC 3 cut(s) 695, 963, 1883
BbvI GCAGC 3 cut(s) 389, 1114, 1846
BccI CCATC 4 cut(s) 659, 750, 955, 1893
BceAI ACGGC 1 cut(s) 1267
BcoDI GTCTC 4 cut(s) 35, 735, 1050, 1991
BfaI CTAG 9 cut(s) 120, 174, 266, 468, 627, 1229, 1467, 1938, 2080
BfmI CTRYAG 1 cut(s) 1177
BfoI RGCGCY 1 cut(s) 1297
BisI GCNGC 7 cut(s) 152, 378, 917, 1103, 1134, 1857, 1860
BlsI GCNGC 7 cut(s) 153, 379, 918, 1104, 1135, 1858, 1861
Bme18I GGWCC 7 cut(s) 106, 308, 421, 1023, 1434, 1610, 1672
BmeT110I CYCGRG 1 cut(s) 1380
BmiI GGNNCC 5 cut(s) 683, 808, 1024, 1295, 1836
BmrI ACTGGG 1 cut(s) 239
BmsI GCATC 3 cut(s) 490, 529, 1360
BmuI ACTGGG 1 cut(s) 239
BpiI GAAGAC 3 cut(s) 66, 807, 1422
BplI GAGNNNNNCTC 4 cut(s) 1134, 1166, 1537, 1569
BpmI CTGGAG 5 cut(s) 71, 1070, 1140, 1158, 1558
BpuEI CTTGAG 2 cut(s) 691, 717
BsaBI GATNNNNATC 2 cut(s) 650, 741
BsaHI GRCGYC 1 cut(s) 1294
BsaJI CCNNGG 9 cut(s) 66, 311, 523, 566, 746, 1076, 1115, 1157, 1509
BsaWI WCCGGW 1 cut(s) 1837
BsaXI ACNNNNNCTCC 6 cut(s) 1531, 1561, 1581, 1611, 1888, 1918
Bsc4I CCNNNNNNNGG 9 cut(s) 144, 430, 567, 573, 804, 899, 1542, 1624, 1742
Bse118I RCCGGY 1 cut(s) 364
Bse1I ACTGG 4 cut(s) 138, 234, 298, 1821
Bse3DI GCAATG 1 cut(s) 1753
Bse8I GATNNNNATC 2 cut(s) 650, 741
BseAI TCCGGA 1 cut(s) 1837
BseDI CCNNGG 9 cut(s) 66, 311, 523, 566, 746, 1076, 1115, 1157, 1509
BseGI GGATG 3 cut(s) 321, 742, 1519
BseJI GATNNNNATC 2 cut(s) 650, 741
BseLI CCNNNNNNNGG 9 cut(s) 144, 430, 567, 573, 804, 899, 1542, 1624, 1742
BseMI GCAATG 1 cut(s) 1753
BseMII CTCAG 6 cut(s) 24, 191, 402, 606, 740, 1119
BseNI ACTGG 4 cut(s) 138, 234, 298, 1821
BseRI GAGGAG 2 cut(s) 55, 1155
BseSI GKGCMC 2 cut(s) 685, 810
BseXI GCAGC 3 cut(s) 389, 1114, 1846
BseYI CCCAGC 2 cut(s) 428, 752
BsgI GTGCAG 1 cut(s) 241
BshFI GGCC 9 cut(s) 364, 683, 712, 751, 792, 808, 1401, 1711, 1820
BshNI GGYRCC 1 cut(s) 1293
BsiHKAI GWGCWC 3 cut(s) 695, 963, 1883
BsiHKCI CYCGRG 1 cut(s) 1380
BsiSI CCGG 2 cut(s) 365, 1838
BslI CCNNNNNNNGG 9 cut(s) 144, 430, 567, 573, 804, 899, 1542, 1624, 1742
BsmAI GTCTC 4 cut(s) 35, 735, 1050, 1991
BsmBI CGTCTC 1 cut(s) 1050
BsmI GAATGC 1 cut(s) 1693
BsnI GGCC 9 cut(s) 364, 683, 712, 751, 792, 808, 1401, 1711, 1820
BsoBI CYCGRG 1 cut(s) 1380
Bsp120I GGGCCC 2 cut(s) 681, 806
Bsp1286I GDGCHC 6 cut(s) 467, 685, 695, 810, 963, 1883
Bsp13I TCCGGA 1 cut(s) 1837
Bsp1407I TGTACA 1 cut(s) 514
Bsp143I GATC 5 cut(s) 111, 1067, 1594, 1834, 1885
Bsp19I CCATGG 1 cut(s) 1509
BspACI CCGC 6 cut(s) 152, 917, 1105, 1133, 1162, 1856
BspANI GGCC 9 cut(s) 364, 683, 712, 751, 792, 808, 1401, 1711, 1820
BspCNI CTCAG 6 cut(s) 25, 192, 403, 607, 739, 1120
BspEI TCCGGA 1 cut(s) 1837
BspHI TCATGA 1 cut(s) 1702
BspLI GGNNCC 5 cut(s) 683, 808, 1024, 1295, 1836
BspPI GGATC 4 cut(s) 1075, 1829, 1842, 1880
BspT107I GGYRCC 1 cut(s) 1293
BsrDI GCAATG 1 cut(s) 1753
BsrFI RCCGGY 1 cut(s) 364
BsrGI TGTACA 1 cut(s) 514
BsrI ACTGG 4 cut(s) 138, 234, 298, 1821
BssAI RCCGGY 1 cut(s) 364
BssECI CCNNGG 9 cut(s) 66, 311, 523, 566, 746, 1076, 1115, 1157, 1509
BssMI GATC 5 cut(s) 111, 1067, 1594, 1834, 1885
BssNI GRCGYC 1 cut(s) 1294
BssSI CACGAG 1 cut(s) 548
BssT1I CCWWGG 1 cut(s) 1509
Bst2BI CACGAG 1 cut(s) 548
Bst4CI ACNGT 6 cut(s) 46, 348, 496, 1220, 1246, 1348
Bst6I CTCTTC 4 cut(s) 562, 669, 1081, 1366
BstACI GRCGYC 1 cut(s) 1294
BstAPI GCANNNNNTGC 1 cut(s) 2056
BstAUI TGTACA 1 cut(s) 514
BstC8I GCNNGC 3 cut(s) 247, 366, 2052
BstDEI CTNAG 8 cut(s) 33, 95, 200, 411, 615, 726, 819, 1128
BstDSI CCRYGG 2 cut(s) 311, 1509
BstF5I GGATG 3 cut(s) 321, 742, 1519
BstH2I RGCGCY 1 cut(s) 1297
BstHHI GCGC 1 cut(s) 1296
BstKTI GATC 5 cut(s) 114, 1070, 1597, 1837, 1888
BstMAI GTCTC 4 cut(s) 35, 735, 1050, 1991
BstMBI GATC 5 cut(s) 111, 1067, 1594, 1834, 1885
BstMWI GCNNNNNNNGC 8 cut(s) 219, 374, 471, 718, 1111, 1142, 1168, 2056
BstSFI CTRYAG 1 cut(s) 1177
BstSLI GKGCMC 2 cut(s) 685, 810
BstV1I GCAGC 3 cut(s) 389, 1114, 1846
BstV2I GAAGAC 3 cut(s) 66, 807, 1422
BstX2I RGATCY 2 cut(s) 1067, 1834
BstXI CCANNNNNNTGG 3 cut(s) 305, 1164, 1256
BstYI RGATCY 2 cut(s) 1067, 1834
BsuRI GGCC 9 cut(s) 364, 683, 712, 751, 792, 808, 1401, 1711, 1820
BtgI CCRYGG 2 cut(s) 311, 1509
BtsCI GGATG 3 cut(s) 321, 742, 1519
BtsIMutI CAGTG 2 cut(s) 305, 492
Cac8I GCNNGC 3 cut(s) 247, 366, 2052
CaiI CAGNNNCTG 1 cut(s) 144
CciI TCATGA 1 cut(s) 1702
CfoI GCGC 1 cut(s) 1296
Cfr10I RCCGGY 1 cut(s) 364
Csp6I GTAC 2 cut(s) 515, 1061
CspCI CAANNNNNGTGG 2 cut(s) 332, 367
CviAII CATG 8 cut(s) 241, 425, 992, 1064, 1223, 1510, 1623, 1703
CviQI GTAC 2 cut(s) 515, 1061
DdeI CTNAG 8 cut(s) 33, 95, 200, 411, 615, 726, 819, 1128
DinI GGCGCC 1 cut(s) 1295
DpnI GATC 5 cut(s) 113, 1069, 1596, 1836, 1887
DpnII GATC 5 cut(s) 111, 1067, 1594, 1834, 1885
DraI TTTAAA 2 cut(s) 78, 1798
EaeI YGGCCR 1 cut(s) 1709
Eam1104I CTCTTC 4 cut(s) 562, 669, 1081, 1366
EarI CTCTTC 4 cut(s) 562, 669, 1081, 1366
Eco130I CCWWGG 1 cut(s) 1509
Eco147I AGGCCT 1 cut(s) 792
Eco24I GRGCYC 3 cut(s) 467, 685, 810
Eco47I GGWCC 7 cut(s) 106, 308, 421, 1023, 1434, 1610, 1672
Eco57I CTGAAG 3 cut(s) 1320, 1347, 2045
Eco88I CYCGRG 1 cut(s) 1380
EcoO109I RGGNCCY 4 cut(s) 106, 682, 807, 1610
EcoRI GAATTC 1 cut(s) 595
EcoT14I CCWWGG 1 cut(s) 1509
EcoT38I GRGCYC 3 cut(s) 467, 685, 810
EgeI GGCGCC 1 cut(s) 1295
EheI GGCGCC 1 cut(s) 1295
ErhI CCWWGG 1 cut(s) 1509
Esp3I CGTCTC 1 cut(s) 1050
FaeI CATG 8 cut(s) 244, 428, 995, 1067, 1226, 1513, 1626, 1706
FalI AAGNNNNNCTT 2 cut(s) 1407, 1439
FatI CATG 8 cut(s) 240, 424, 991, 1063, 1222, 1509, 1622, 1702
FblI GTMKAC 1 cut(s) 226
Fnu4HI GCNGC 7 cut(s) 152, 378, 917, 1103, 1134, 1857, 1860
FokI GGATG 3 cut(s) 328, 729, 1526
FriOI GRGCYC 3 cut(s) 467, 685, 810
Fsp4HI GCNGC 7 cut(s) 152, 378, 917, 1103, 1134, 1857, 1860
FspBI CTAG 9 cut(s) 120, 174, 266, 468, 627, 1229, 1467, 1938, 2080
GlaI GCGC 1 cut(s) 1295
GluI GCNGC 7 cut(s) 152, 378, 917, 1103, 1134, 1857, 1860
GsaI CCCAGC 2 cut(s) 432, 756
GsuI CTGGAG 5 cut(s) 71, 1070, 1140, 1158, 1558
HaeII RGCGCY 1 cut(s) 1297
HaeIII GGCC 9 cut(s) 364, 683, 712, 751, 792, 808, 1401, 1711, 1820
HapII CCGG 2 cut(s) 365, 1838
HhaI GCGC 1 cut(s) 1296
Hin1I GRCGYC 1 cut(s) 1294
Hin1II CATG 8 cut(s) 244, 428, 995, 1067, 1226, 1513, 1626, 1706
Hin6I GCGC 1 cut(s) 1294
HinP1I GCGC 1 cut(s) 1294
HindIII AAGCTT 3 cut(s) 1034, 1421, 1970
HpaII CCGG 2 cut(s) 365, 1838
HphI GGTGA 4 cut(s) 823, 914, 957, 1840
Hpy166II GTNNAC 3 cut(s) 227, 905, 1589
Hpy188I TCNGA 6 cut(s) 412, 507, 616, 1332, 1876, 1885
Hpy8I GTNNAC 3 cut(s) 227, 905, 1589
HpyAV CCTTC 5 cut(s) 316, 1513, 1825, 2009, 2032
HpyCH4III ACNGT 6 cut(s) 46, 348, 496, 1220, 1246, 1348
HpyCH4V TGCA 3 cut(s) 222, 377, 1923
HpyF10VI GCNNNNNNNGC 8 cut(s) 219, 374, 471, 718, 1111, 1142, 1168, 2056
HpyF3I CTNAG 8 cut(s) 33, 95, 200, 411, 615, 726, 819, 1128
Hsp92I GRCGYC 1 cut(s) 1294
Hsp92II CATG 8 cut(s) 244, 428, 995, 1067, 1226, 1513, 1626, 1706
HspAI GCGC 1 cut(s) 1294
KasI GGCGCC 1 cut(s) 1293
Kpn2I TCCGGA 1 cut(s) 1837
KroI GCCGGC 1 cut(s) 364
KroNI GCCGGC 1 cut(s) 366
Kzo9I GATC 5 cut(s) 111, 1067, 1594, 1834, 1885
LmnI GCTCC 6 cut(s) 52, 1142, 1378, 1663, 1944, 2047
Lsp1109I GCAGC 3 cut(s) 389, 1114, 1846
LweI GCATC 3 cut(s) 490, 529, 1360
MaeI CTAG 9 cut(s) 120, 174, 266, 468, 627, 1229, 1467, 1938, 2080
MaeIII GTNAC 5 cut(s) 490, 550, 1384, 1746, 2030
MalI GATC 5 cut(s) 113, 1069, 1596, 1836, 1887
MboI GATC 5 cut(s) 111, 1067, 1594, 1834, 1885
MfeI CAATTG 2 cut(s) 1440, 1680
MflI RGATCY 2 cut(s) 1067, 1834
MhlI GDGCHC 6 cut(s) 467, 685, 695, 810, 963, 1883
Mly113I GGCGCC 1 cut(s) 1294
MmeI TCCRAC 6 cut(s) 336, 585, 1011, 1523, 1847, 1854
MroI TCCGGA 1 cut(s) 1837
MroNI GCCGGC 1 cut(s) 364
MroXI GAANNNNTTC 1 cut(s) 1698
MseI TTAA 7 cut(s) 77, 641, 867, 882, 1353, 1494, 1797
MslI CAYNNNNRTG 1 cut(s) 548
MspA1I CMGCKG 2 cut(s) 154, 1105
MspI CCGG 2 cut(s) 365, 1838
MunI CAATTG 2 cut(s) 1440, 1680
Mva1269I GAATGC 1 cut(s) 1693
MwoI GCNNNNNNNGC 8 cut(s) 219, 374, 471, 718, 1111, 1142, 1168, 2056
NaeI GCCGGC 1 cut(s) 366
NarI GGCGCC 1 cut(s) 1294
NcoI CCATGG 1 cut(s) 1509
NdeII GATC 5 cut(s) 111, 1067, 1594, 1834, 1885
NgoMIV GCCGGC 1 cut(s) 364
NlaIII CATG 8 cut(s) 244, 428, 995, 1067, 1226, 1513, 1626, 1706
NlaIV GGNNCC 5 cut(s) 683, 808, 1024, 1295, 1836
NmeAIII GCCGAG 1 cut(s) 638
NmuCI GTSAC 5 cut(s) 490, 550, 1384, 1746, 2030
OliI CACNNNNGTG 1 cut(s) 548
PagI TCATGA 1 cut(s) 1702
PceI AGGCCT 1 cut(s) 792
PctI GAATGC 1 cut(s) 1693
PdiI GCCGGC 1 cut(s) 366
PdmI GAANNNNTTC 1 cut(s) 1698
PfeI GAWTC 5 cut(s) 875, 1447, 1765, 1909, 1916
PflFI GACNNNGTC 1 cut(s) 231
PflMI CCANNNNNTGG 2 cut(s) 144, 899
PfoI TCCNGGA 2 cut(s) 1211, 1535
PkrI GCNGC 7 cut(s) 153, 379, 918, 1104, 1135, 1858, 1861
PluTI GGCGCC 1 cut(s) 1297
PpuMI RGGWCCY 2 cut(s) 106, 1610
Psp5II RGGWCCY 2 cut(s) 106, 1610
PspFI CCCAGC 2 cut(s) 428, 752
PspN4I GGNNCC 5 cut(s) 683, 808, 1024, 1295, 1836
PspOMI GGGCCC 2 cut(s) 681, 806
PspPPI RGGWCCY 2 cut(s) 106, 1610
PstNI CAGNNNCTG 1 cut(s) 144
PsuI RGATCY 2 cut(s) 1067, 1834
PsyI GACNNNGTC 1 cut(s) 231
RsaI GTAC 2 cut(s) 516, 1062
RsaNI GTAC 2 cut(s) 515, 1061
RseI CAYNNNNRTG 1 cut(s) 548
SaqAI TTAA 7 cut(s) 77, 641, 867, 882, 1353, 1494, 1797
SatI GCNGC 7 cut(s) 152, 378, 917, 1103, 1134, 1857, 1860
Sau3AI GATC 5 cut(s) 111, 1067, 1594, 1834, 1885
SduI GDGCHC 6 cut(s) 467, 685, 695, 810, 963, 1883
SfaNI GCATC 3 cut(s) 490, 529, 1360
SfcI CTRYAG 1 cut(s) 1177
SfoI GGCGCC 1 cut(s) 1295
SinI GGWCC 7 cut(s) 106, 308, 421, 1023, 1434, 1610, 1672
SmiMI CAYNNNNRTG 1 cut(s) 548
SmlI CTYRAG 2 cut(s) 706, 732
SmoI CTYRAG 2 cut(s) 706, 732
SseBI AGGCCT 1 cut(s) 792
SsiI CCGC 6 cut(s) 152, 917, 1105, 1133, 1162, 1856
SspDI GGCGCC 1 cut(s) 1293
SspMI CTAG 9 cut(s) 120, 174, 266, 468, 627, 1229, 1467, 1938, 2080
StuI AGGCCT 1 cut(s) 792
StyI CCWWGG 1 cut(s) 1509
TaaI ACNGT 6 cut(s) 46, 348, 496, 1220, 1246, 1348
TaqI TCGA 4 cut(s) 114, 285, 1368, 2036
TaqII GACCGA 2 cut(s) 1689, 2011
TatI WGTACW 1 cut(s) 514
TauI GCSGC 4 cut(s) 154, 919, 1136, 1859
TfiI GAWTC 5 cut(s) 875, 1447, 1765, 1909, 1916
Tru1I TTAA 7 cut(s) 77, 641, 867, 882, 1353, 1494, 1797
Tru9I TTAA 7 cut(s) 77, 641, 867, 882, 1353, 1494, 1797
TscAI CASTG 2 cut(s) 305, 499
TseFI GTSAC 5 cut(s) 490, 550, 1384, 1746, 2030
TseI GCWGC 3 cut(s) 377, 1102, 1859
Tsp45I GTSAC 5 cut(s) 490, 550, 1384, 1746, 2030
TspDTI ATGAA 8 cut(s) 17, 576, 608, 687, 1428, 1512, 1691, 1863
TspGWI ACGGA 2 cut(s) 300, 1276
TspRI CASTG 2 cut(s) 305, 499
Tth111I GACNNNGTC 1 cut(s) 231
Van91I CCANNNNNTGG 2 cut(s) 144, 899
VpaK11BI GGWCC 7 cut(s) 106, 308, 421, 1023, 1434, 1610, 1672
XapI RAATTY 6 cut(s) 442, 532, 595, 1333, 1567, 1925
XbaI TCTAGA 1 cut(s) 119
XcmI CCANNNNNNNNNTGG 1 cut(s) 1164
XmiI GTMKAC 1 cut(s) 226
XmnI GAANNNNTTC 1 cut(s) 1698
XspI CTAG 9 cut(s) 120, 174, 266, 468, 627, 1229, 1467, 1938, 2080
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.