Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 40 - 82 | 1.4e-10 | Zinc knuckle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 68 |
| AclWI | GGATC | 1 cut(s) | 355 |
| AcoI | YGGCCR | 1 cut(s) | 229 |
| AcsI | RAATTY | 1 cut(s) | 188 |
| AfaI | GTAC | 1 cut(s) | 88 |
| AgsI | TTSAA | 4 cut(s) | 74, 188, 193, 200 |
| AhlI | ACTAGT | 2 cut(s) | 143, 323 |
| AjnI | CCWGG | 1 cut(s) | 179 |
| AleI | CACNNNNGTG | 1 cut(s) | 42 |
| AluBI | AGCT | 2 cut(s) | 350, 483 |
| AluI | AGCT | 2 cut(s) | 350, 483 |
| Alw21I | GWGCWC | 1 cut(s) | 39 |
| AlwI | GGATC | 1 cut(s) | 355 |
| AoxI | GGCC | 3 cut(s) | 131, 229, 391 |
| ApoI | RAATTY | 1 cut(s) | 188 |
| AspS9I | GGNCC | 1 cut(s) | 106 |
| AsuC2I | CCSGG | 1 cut(s) | 342 |
| AsuHPI | GGTGA | 1 cut(s) | 56 |
| AvaII | GGWCC | 1 cut(s) | 106 |
| BanII | GRGCYC | 1 cut(s) | 437 |
| Bbv12I | GWGCWC | 1 cut(s) | 39 |
| BccI | CCATC | 2 cut(s) | 22, 260 |
| BceAI | ACGGC | 1 cut(s) | 216 |
| BciT130I | CCWGG | 1 cut(s) | 181 |
| BcnI | CCSGG | 1 cut(s) | 342 |
| BcuI | ACTAGT | 2 cut(s) | 143, 323 |
| BfaI | CTAG | 4 cut(s) | 126, 144, 324, 464 |
| BfmI | CTRYAG | 1 cut(s) | 304 |
| Bme1390I | CCNGG | 2 cut(s) | 181, 342 |
| Bme18I | GGWCC | 1 cut(s) | 106 |
| BmgT120I | GGNCC | 1 cut(s) | 106 |
| BmiI | GGNNCC | 1 cut(s) | 107 |
| BmrFI | CCNGG | 2 cut(s) | 181, 342 |
| BmsI | GCATC | 1 cut(s) | 112 |
| BpuMI | CCSGG | 1 cut(s) | 342 |
| BsaJI | CCNNGG | 3 cut(s) | 180, 284, 417 |
| BsaWI | WCCGGW | 1 cut(s) | 406 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 370, 400 |
| BseBI | CCWGG | 1 cut(s) | 181 |
| BseDI | CCNNGG | 3 cut(s) | 180, 284, 417 |
| BseGI | GGATG | 2 cut(s) | 252, 321 |
| BseRI | GAGGAG | 1 cut(s) | 394 |
| BsgI | GTGCAG | 1 cut(s) | 408 |
| Bsh1285I | CGRYCG | 1 cut(s) | 341 |
| BshFI | GGCC | 3 cut(s) | 133, 231, 393 |
| BsiEI | CGRYCG | 1 cut(s) | 341 |
| BsiHKAI | GWGCWC | 1 cut(s) | 39 |
| BsiSI | CCGG | 2 cut(s) | 341, 407 |
| BslFI | GGGAC | 2 cut(s) | 159, 357 |
| BsmFI | GGGAC | 2 cut(s) | 159, 357 |
| BsnI | GGCC | 3 cut(s) | 133, 231, 393 |
| Bsp1286I | GDGCHC | 2 cut(s) | 39, 437 |
| Bsp143I | GATC | 1 cut(s) | 360 |
| BspACI | CCGC | 1 cut(s) | 68 |
| BspANI | GGCC | 3 cut(s) | 133, 231, 393 |
| BspLI | GGNNCC | 1 cut(s) | 107 |
| BspPI | GGATC | 1 cut(s) | 355 |
| BssECI | CCNNGG | 3 cut(s) | 180, 284, 417 |
| BssMI | GATC | 1 cut(s) | 360 |
| BssT1I | CCWWGG | 2 cut(s) | 284, 417 |
| Bst2UI | CCWGG | 1 cut(s) | 181 |
| Bst4CI | ACNGT | 2 cut(s) | 301, 505 |
| Bst6I | CTCTTC | 2 cut(s) | 18, 159 |
| BstC8I | GCNNGC | 2 cut(s) | 391, 481 |
| BstF5I | GGATG | 2 cut(s) | 252, 321 |
| BstKTI | GATC | 1 cut(s) | 363 |
| BstMBI | GATC | 1 cut(s) | 360 |
| BstMCI | CGRYCG | 1 cut(s) | 341 |
| BstNI | CCWGG | 1 cut(s) | 181 |
| BstSCI | CCNGG | 2 cut(s) | 179, 340 |
| BstSFI | CTRYAG | 1 cut(s) | 304 |
| BsuRI | GGCC | 3 cut(s) | 133, 231, 393 |
| BtsCI | GGATG | 2 cut(s) | 252, 321 |
| BtsIMutI | CAGTG | 1 cut(s) | 510 |
| Cac8I | GCNNGC | 2 cut(s) | 391, 481 |
| Cfr13I | GGNCC | 1 cut(s) | 106 |
| Csp6I | GTAC | 1 cut(s) | 87 |
| CviAII | CATG | 1 cut(s) | 115 |
| CviJI | RGCY | 7 cut(s) | 133, 231, 350, 393, 435, 479, 483 |
| CviKI_1 | RGCY | 7 cut(s) | 133, 231, 350, 393, 435, 479, 483 |
| CviQI | GTAC | 1 cut(s) | 87 |
| DpnI | GATC | 1 cut(s) | 362 |
| DpnII | GATC | 1 cut(s) | 360 |
| EaeI | YGGCCR | 1 cut(s) | 229 |
| Eam1104I | CTCTTC | 2 cut(s) | 18, 159 |
| EarI | CTCTTC | 2 cut(s) | 18, 159 |
| Eco130I | CCWWGG | 2 cut(s) | 284, 417 |
| Eco24I | GRGCYC | 1 cut(s) | 437 |
| Eco47I | GGWCC | 1 cut(s) | 106 |
| EcoRI | GAATTC | 1 cut(s) | 188 |
| EcoRII | CCWGG | 1 cut(s) | 179 |
| EcoT14I | CCWWGG | 2 cut(s) | 284, 417 |
| EcoT38I | GRGCYC | 1 cut(s) | 437 |
| ErhI | CCWWGG | 2 cut(s) | 284, 417 |
| FaeI | CATG | 1 cut(s) | 118 |
| FaiI | YATR | 4 cut(s) | 116, 168, 306, 476 |
| FaqI | GGGAC | 2 cut(s) | 159, 357 |
| FatI | CATG | 1 cut(s) | 114 |
| FauI | CCCGC | 1 cut(s) | 75 |
| FokI | GGATG | 2 cut(s) | 239, 328 |
| FriOI | GRGCYC | 1 cut(s) | 437 |
| FspBI | CTAG | 4 cut(s) | 126, 144, 324, 464 |
| HaeIII | GGCC | 3 cut(s) | 133, 231, 393 |
| HapII | CCGG | 2 cut(s) | 341, 407 |
| Hin1II | CATG | 1 cut(s) | 118 |
| HpaII | CCGG | 2 cut(s) | 341, 407 |
| HphI | GGTGA | 1 cut(s) | 56 |
| Hpy188I | TCNGA | 3 cut(s) | 14, 292, 365 |
| Hpy188III | TCNNGA | 1 cut(s) | 210 |
| HpyAV | CCTTC | 3 cut(s) | 77, 110, 369 |
| HpyCH4III | ACNGT | 2 cut(s) | 301, 505 |
| HpyCH4V | TGCA | 1 cut(s) | 389 |
| Hsp92II | CATG | 1 cut(s) | 118 |
| Kzo9I | GATC | 1 cut(s) | 360 |
| LpnPI | CCDG | 7 cut(s) | 166, 193, 354, 375, 381, 420, 493 |
| LweI | GCATC | 1 cut(s) | 112 |
| MaeI | CTAG | 4 cut(s) | 126, 144, 324, 464 |
| MaeIII | GTNAC | 1 cut(s) | 505 |
| MalI | GATC | 1 cut(s) | 362 |
| MboI | GATC | 1 cut(s) | 360 |
| MboII | GAAGA | 4 cut(s) | 35, 146, 290, 509 |
| MhlI | GDGCHC | 2 cut(s) | 39, 437 |
| MluCI | AATT | 2 cut(s) | 188, 399 |
| MmeI | TCCRAC | 1 cut(s) | 388 |
| MnlI | CCTC | 5 cut(s) | 123, 187, 286, 372, 486 |
| MslI | CAYNNNNRTG | 2 cut(s) | 42, 56 |
| MspI | CCGG | 2 cut(s) | 341, 407 |
| MspR9I | CCNGG | 2 cut(s) | 181, 342 |
| MvaI | CCWGG | 1 cut(s) | 181 |
| NciI | CCSGG | 1 cut(s) | 342 |
| NdeII | GATC | 1 cut(s) | 360 |
| NlaIII | CATG | 1 cut(s) | 118 |
| NlaIV | GGNNCC | 1 cut(s) | 107 |
| NmuCI | GTSAC | 1 cut(s) | 505 |
| OliI | CACNNNNGTG | 1 cut(s) | 42 |
| Psp6I | CCWGG | 1 cut(s) | 179 |
| PspGI | CCWGG | 1 cut(s) | 179 |
| PspN4I | GGNNCC | 1 cut(s) | 107 |
| PspPI | GGNCC | 1 cut(s) | 106 |
| RsaI | GTAC | 1 cut(s) | 88 |
| RsaNI | GTAC | 1 cut(s) | 87 |
| RseI | CAYNNNNRTG | 2 cut(s) | 42, 56 |
| Sau3AI | GATC | 1 cut(s) | 360 |
| Sau96I | GGNCC | 1 cut(s) | 106 |
| ScrFI | CCNGG | 2 cut(s) | 181, 342 |
| SduI | GDGCHC | 2 cut(s) | 39, 437 |
| SetI | ASST | 7 cut(s) | 88, 206, 290, 352, 419, 461, 485 |
| SfaNI | GCATC | 1 cut(s) | 112 |
| SfcI | CTRYAG | 1 cut(s) | 304 |
| SinI | GGWCC | 1 cut(s) | 106 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 42, 56 |
| SpeI | ACTAGT | 2 cut(s) | 143, 323 |
| Sse9I | AATT | 2 cut(s) | 188, 399 |
| SsiI | CCGC | 1 cut(s) | 68 |
| SspMI | CTAG | 4 cut(s) | 126, 144, 324, 464 |
| StyD4I | CCNGG | 2 cut(s) | 179, 340 |
| StyI | CCWWGG | 2 cut(s) | 284, 417 |
| TaaI | ACNGT | 2 cut(s) | 301, 505 |
| TasI | AATT | 2 cut(s) | 188, 399 |
| TscAI | CASTG | 1 cut(s) | 510 |
| TseFI | GTSAC | 1 cut(s) | 505 |
| Tsp45I | GTSAC | 1 cut(s) | 505 |
| TspDTI | ATGAA | 1 cut(s) | 40 |
| TspGWI | ACGGA | 1 cut(s) | 98 |
| TspRI | CASTG | 1 cut(s) | 510 |
| VpaK11BI | GGWCC | 1 cut(s) | 106 |
| XapI | RAATTY | 1 cut(s) | 188 |
| XspI | CTAG | 4 cut(s) | 126, 144, 324, 464 |