Rw3G016400

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000073
Physical Location & Seq
Reverse (-)
17326531 .. 17328372
1842 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G016400.1

Sequence Viewer

Length: 1842 bp
ATGGCGGACCATCAGGTTGACCTAGATCTCGACCTCCTTGACCTGGCTGAATTGGAGCAGTTCCCATACCAACTTATTGGCTACGTGATCTCTGATAAGTCCCTCAATGTGCCTGCAGTTATCCGCATCCTTACCCATGCTTGGCAGGAGTTTGGATGGCTCCACATTGAACCCATCCAAGATTATCGTATCTATTCCATCACTCTAGAGAATGAAGATGCTGGCCAACTTCTCAAAGCTCGGGGCCCTTGGTCCGTCATGAGGTGCAGTTTCACCATCCATACCTGGCCTCTAGAGAGCCGTCTGTGTGATCTCCCGCTACATATGCTCTCAATCTGGATCCAAGCCCACGGTCTTCCTCTTCGACAGATGTCTCTGAAGAATGCCAACATAATGGGGTCGGCCATCGGAAGTGTTGAGGACGTTGAGGATCCCCATAGCCCTGAAGGATGGAGGGGTTACATTCGCATCCGTGTGCAGATTGATTCCCGCCGCCCCCTCATCTCTGGGTTCCGGTTTCGTCGCGACAAGCCCCACATGAAGGCCCAAATCCACTACGAACGCCTATCTAACTTTTGCCACACTTGTGGACGCCTTGGCCACATAGCCCGCACCTGCCCTCATGCAAAATCAACTACCATGCATTCTGCTACCCCACCTATTCCCCTTTATAGGGATTGGCTCAAAGCCAAAATGGCGAGGCGCATCCTCCCCCCACTCAACCCCAACCCTGCACCACCAATGATGTCGGAACCGTTACCCAATCATTTTGGCTGGGAAGATTCAGGACCCCAAGACCTTATGATCATCCAAGCTCTAGAGGCTTTCTCTCCTATCCCGGATATCCCTACCCCCATAATCCACACTGATGATCTCTTTATGCCTAATTTCAACTCAAGGGACATCCCCCCTCCAGGTTTTGAGCGAAGGCCTCCAGCTTATGGTTCTTATAGGGGCATCACTATCAATGAGCCAGGCGACTGTGCTTCGGAGGTCAGTATGGATGTGAGCATGATTCAGAGAGACAACCCTCCTATTATGGGCCCAAGAGACAAAGGGAAGGCTAAGTTATTTGATGAACAAATGGAGGCCATCTTGGCGGCCAACCCTTTCCTCAGGCCCAACCCTACTTCCATCCCTCCCGATGTCCTACTAGAGTACCACTCTTCCCACATGTTGGATCAGTATGCGGCTATGGCCATGGGAACCCCAATCACTGATATTGCAGGGCCGTCCAATCTCCTGTTCAACCCCCAGGCCCATCCCAACCTACCCAATCCATACATTGAACCCAATCCTCCATCTCTCAGCCAAATCTCTGATACCCCATCCCAATTCGAATATGCTCGTCCCCTACCTTTATCCCCTTCTCCATCTCAGATACCTTCCCCTCTTCTTGCTGACCCTGTGTCTTTCATGCCACCATCCCCTCCCCAATCTACAGAATCCACCATTTCCACCATTTCCACCACTCTTGAGCAGCTACAACTCAAACGCCTGACTCCTACATATGAAGATCTACCTTCTCCAAAACATCATTGCCTTCTCAACCCCCATGAGGAACAGCCCACTGACCCCATTTCCCATCTTCACCAATCCCAGACTCACGACCCCCTTCCTCCCACTCGGGGACGAGGCCGAGGTCGAGGTCGAGGTCGAGGTAGGTCCGCCTCTTCAGGCCGTGGGGGCTGGGGTCGAGGTCGGAGCCGCGCTACCCTTGATCCCTTCATCATCCCTACCCAAGCTGCCTACTCACAAGATCGAGCTACTCAGCTCCATGGAACTATCATCCAAGGAGATTCCTTATATGAGGTCCAAATTCAATTAGCTGAACAGGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4 zf-RING_2

Protein Analysis

613

Amino Acids

68.69

Weight (kDa)

6.14

Isoelectric Point (pI)

54.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 161 - 207 3e-07 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 623
Acc36I ACCTGC 1 cut(s) 623
AccB7I CCANNNNNTGG 2 cut(s) 941, 1177
AccII CGCG 2 cut(s) 525, 1710
AclWI GGATC 6 cut(s) 334, 347, 425, 438, 1188, 1715
AcoI YGGCCR 5 cut(s) 223, 402, 598, 1101, 1197
AcsI RAATTY 1 cut(s) 1818
AcuI CTGAAG 3 cut(s) 398, 465, 1659
AcyI GRCGYC 1 cut(s) 592
AfaI GTAC 1 cut(s) 1160
AflIII ACRYGT 1 cut(s) 1173
AgsI TTSAA 5 cut(s) 170, 892, 1249, 1289, 1823
AhdI GACNNNNNGTC 1 cut(s) 1408
AjnI CCWGG 5 cut(s) 42, 284, 913, 973, 1254
AjuI GAANNNNNNNTTGG 2 cut(s) 1229, 1261
AleI CACNNNNGTG 1 cut(s) 585
AluBI AGCT 8 cut(s) 239, 815, 938, 1483, 1745, 1766, 1774, 1829
AluI AGCT 8 cut(s) 239, 815, 938, 1483, 1745, 1766, 1774, 1829
Alw26I GTCTC 3 cut(s) 378, 1017, 1044
AlwI GGATC 6 cut(s) 334, 347, 425, 438, 1188, 1715
Ama87I CYCGRG 2 cut(s) 240, 1626
ApaI GGGCCC 2 cut(s) 248, 1046
ApeKI GCWGC 2 cut(s) 1480, 1745
ApoI RAATTY 1 cut(s) 1818
AspLEI GCGC 2 cut(s) 705, 1712
AsuC2I CCSGG 1 cut(s) 839
AsuHPI GGTGA 2 cut(s) 265, 1583
AsuII TTCGAA 1 cut(s) 1338
AvaI CYCGRG 2 cut(s) 240, 1626
AvaII GGWCC 5 cut(s) 7, 252, 788, 1665, 1813
AxyI CCTNAGG 1 cut(s) 1115
BaeGI GKGCMC 2 cut(s) 248, 1046
BaeI ACNNNNGTAYC 2 cut(s) 1142, 1175
BalI TGGCCA 3 cut(s) 225, 600, 1199
BamHI GGATCC 2 cut(s) 339, 430
BanII GRGCYC 2 cut(s) 248, 1046
BbsI GAAGAC 1 cut(s) 347
BbvI GCAGC 2 cut(s) 1492, 1732
BceAI ACGGC 3 cut(s) 285, 1216, 1665
BciT130I CCWGG 5 cut(s) 44, 286, 915, 975, 1256
BclI TGATCA 1 cut(s) 804
BcnI CCSGG 1 cut(s) 839
BcoDI GTCTC 3 cut(s) 378, 1017, 1044
BfaI CTAG 6 cut(s) 23, 206, 293, 818, 1154, 1840
BfmI CTRYAG 2 cut(s) 114, 1440
BfuAI ACCTGC 1 cut(s) 623
BglI GCCNNNNNGGC 3 cut(s) 695, 1097, 1686
BglII AGATCT 2 cut(s) 25, 1516
BisI GCNGC 6 cut(s) 493, 1101, 1191, 1481, 1708, 1746
BlsI GCNGC 6 cut(s) 494, 1102, 1192, 1482, 1709, 1747
Bme1390I CCNGG 6 cut(s) 44, 286, 839, 915, 975, 1256
Bme18I GGWCC 5 cut(s) 7, 252, 788, 1665, 1813
BmeRI GACNNNNNGTC 1 cut(s) 1408
BmeT110I CYCGRG 2 cut(s) 240, 1626
BmrFI CCNGG 6 cut(s) 44, 286, 839, 915, 975, 1256
BmsI GCATC 5 cut(s) 135, 208, 477, 714, 966
BoxI GACNNNNGTC 1 cut(s) 370
BpiI GAAGAC 1 cut(s) 347
BplI GAGNNNNNCTC 4 cut(s) 812, 844, 1148, 1180
BpmI CTGGAG 2 cut(s) 897, 918
Bpu14I TTCGAA 1 cut(s) 1338
BpuEI CTTGAG 2 cut(s) 880, 1496
BpuMI CCSGG 1 cut(s) 839
BsaAI YACGTR 1 cut(s) 85
BsaHI GRCGYC 1 cut(s) 592
BsaJI CCNNGG 9 cut(s) 248, 349, 595, 1200, 1254, 1639, 1681, 1777, 1792
BsaWI WCCGGW 1 cut(s) 513
Bse21I CCTNAGG 1 cut(s) 1115
Bse3DI GCAATG 1 cut(s) 1537
BseBI CCWGG 5 cut(s) 44, 286, 915, 975, 1256
BseDI CCNNGG 9 cut(s) 248, 349, 595, 1200, 1254, 1639, 1681, 1777, 1792
BseMI GCAATG 1 cut(s) 1537
BseMII CTCAG 4 cut(s) 1129, 1321, 1391, 1784
BseSI GKGCMC 2 cut(s) 248, 1046
BseXI GCAGC 2 cut(s) 1492, 1732
BseYI CCCAGC 2 cut(s) 774, 1689
BsgI GTGCAG 3 cut(s) 286, 497, 717
Bsh1236I CGCG 2 cut(s) 525, 1710
BsiHKCI CYCGRG 2 cut(s) 240, 1626
BsiSI CCGG 2 cut(s) 514, 839
BslFI GGGAC 4 cut(s) 85, 914, 1335, 1644
BsmAI GTCTC 3 cut(s) 378, 1017, 1044
BsmFI GGGAC 4 cut(s) 85, 914, 1335, 1644
BsmI GAATGC 2 cut(s) 388, 643
BsoBI CYCGRG 2 cut(s) 240, 1626
Bsp119I TTCGAA 1 cut(s) 1338
Bsp120I GGGCCC 2 cut(s) 244, 1042
Bsp1286I GDGCHC 2 cut(s) 248, 1046
Bsp19I CCATGG 2 cut(s) 1200, 1777
Bsp68I TCGCGA 1 cut(s) 525
BspCNI CTCAG 4 cut(s) 1128, 1320, 1390, 1783
BspFNI CGCG 2 cut(s) 525, 1710
BspHI TCATGA 1 cut(s) 258
BspMAI CTGCAG 1 cut(s) 118
BspMI ACCTGC 1 cut(s) 623
BspPI GGATC 6 cut(s) 334, 347, 425, 438, 1188, 1715
BspT104I TTCGAA 1 cut(s) 1338
BsrDI GCAATG 1 cut(s) 1537
BssECI CCNNGG 9 cut(s) 248, 349, 595, 1200, 1254, 1639, 1681, 1777, 1792
BssNI GRCGYC 1 cut(s) 592
BssT1I CCWWGG 5 cut(s) 248, 595, 1200, 1777, 1792
Bst2UI CCWGG 5 cut(s) 44, 286, 915, 975, 1256
Bst4CI ACNGT 3 cut(s) 353, 756, 983
Bst6I CTCTTC 4 cut(s) 366, 1171, 1398, 1678
BstACI GRCGYC 1 cut(s) 592
BstBAI YACGTR 1 cut(s) 85
BstBI TTCGAA 1 cut(s) 1338
BstC8I GCNNGC 3 cut(s) 114, 223, 610
BstDEI CTNAG 5 cut(s) 1065, 1115, 1307, 1377, 1770
BstDSI CCRYGG 4 cut(s) 349, 1200, 1681, 1777
BstFNI CGCG 2 cut(s) 525, 1710
BstHHI GCGC 2 cut(s) 705, 1712
BstMAI GTCTC 3 cut(s) 378, 1017, 1044
BstMWI GCNNNNNNNGC 6 cut(s) 325, 695, 821, 1097, 1196, 1686
BstNI CCWGG 5 cut(s) 44, 286, 915, 975, 1256
BstNSI RCATGY 1 cut(s) 1177
BstPAI GACNNNNGTC 1 cut(s) 370
BstSCI CCNGG 6 cut(s) 42, 284, 837, 913, 973, 1254
BstSFI CTRYAG 2 cut(s) 114, 1440
BstSLI GKGCMC 2 cut(s) 248, 1046
BstUI CGCG 2 cut(s) 525, 1710
BstV1I GCAGC 2 cut(s) 1492, 1732
BstV2I GAAGAC 1 cut(s) 347
BstX2I RGATCY 4 cut(s) 25, 339, 430, 1516
BstXI CCANNNNNNTGG 3 cut(s) 77, 394, 587
BstYI RGATCY 4 cut(s) 25, 339, 430, 1516
Bsu36I CCTNAGG 1 cut(s) 1115
BtgI CCRYGG 4 cut(s) 349, 1200, 1681, 1777
BtsIMutI CAGTG 3 cut(s) 864, 1215, 1569
BtuMI TCGCGA 1 cut(s) 525
BveI ACCTGC 1 cut(s) 623
Cac8I GCNNGC 3 cut(s) 114, 223, 610
CciI TCATGA 1 cut(s) 258
CfoI GCGC 2 cut(s) 705, 1712
CseI GACGC 1 cut(s) 600
Csp6I GTAC 1 cut(s) 1159
CspCI CAANNNNNGTGG 2 cut(s) 1456, 1491
CviQI GTAC 1 cut(s) 1159
DdeI CTNAG 5 cut(s) 1065, 1115, 1307, 1377, 1770
DriI GACNNNNNGTC 1 cut(s) 1408
EaeI YGGCCR 5 cut(s) 223, 402, 598, 1101, 1197
Eam1104I CTCTTC 4 cut(s) 366, 1171, 1398, 1678
Eam1105I GACNNNNNGTC 1 cut(s) 1408
EarI CTCTTC 4 cut(s) 366, 1171, 1398, 1678
EciI GGCGGA 2 cut(s) 20, 1657
Eco130I CCWWGG 5 cut(s) 248, 595, 1200, 1777, 1792
Eco147I AGGCCT 1 cut(s) 931
Eco24I GRGCYC 2 cut(s) 248, 1046
Eco32I GATATC 1 cut(s) 844
Eco47I GGWCC 5 cut(s) 7, 252, 788, 1665, 1813
Eco57I CTGAAG 3 cut(s) 398, 465, 1659
Eco81I CCTNAGG 1 cut(s) 1115
Eco88I CYCGRG 2 cut(s) 240, 1626
EcoO109I RGGNCCY 3 cut(s) 244, 245, 788
EcoRII CCWGG 5 cut(s) 42, 284, 913, 973, 1254
EcoRV GATATC 1 cut(s) 844
EcoT14I CCWWGG 5 cut(s) 248, 595, 1200, 1777, 1792
EcoT22I ATGCAT 1 cut(s) 645
EcoT38I GRGCYC 2 cut(s) 248, 1046
ErhI CCWWGG 5 cut(s) 248, 595, 1200, 1777, 1792
FaqI GGGAC 4 cut(s) 85, 914, 1335, 1644
FauI CCCGC 3 cut(s) 324, 497, 617
FauNDI CATATG 2 cut(s) 324, 1510
FbaI TGATCA 1 cut(s) 804
Fnu4HI GCNGC 6 cut(s) 493, 1101, 1191, 1481, 1708, 1746
FriOI GRGCYC 2 cut(s) 248, 1046
Fsp4HI GCNGC 6 cut(s) 493, 1101, 1191, 1481, 1708, 1746
FspBI CTAG 6 cut(s) 23, 206, 293, 818, 1154, 1840
GlaI GCGC 2 cut(s) 704, 1711
GluI GCNGC 6 cut(s) 493, 1101, 1191, 1481, 1708, 1746
GsaI CCCAGC 2 cut(s) 778, 1693
GsuI CTGGAG 2 cut(s) 897, 918
HapII CCGG 2 cut(s) 514, 839
HgaI GACGC 1 cut(s) 600
HhaI GCGC 2 cut(s) 705, 1712
Hin1I GRCGYC 1 cut(s) 592
Hin6I GCGC 2 cut(s) 703, 1710
HinP1I GCGC 2 cut(s) 703, 1710
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HinfI GANTC 7 cut(s) 485, 782, 1015, 1445, 1501, 1603, 1799
HpaII CCGG 2 cut(s) 514, 839
HphI GGTGA 2 cut(s) 265, 1583
Hpy166II GTNNAC 2 cut(s) 19, 590
Hpy188I TCNGA 9 cut(s) 94, 378, 410, 751, 991, 1020, 1321, 1380, 1704
Hpy8I GTNNAC 2 cut(s) 19, 590
Hpy99I CGWCG 1 cut(s) 525
HpyCH4III ACNGT 3 cut(s) 353, 756, 983
HpyCH4IV ACGT 2 cut(s) 84, 423
HpyCH4V TGCA 7 cut(s) 116, 267, 478, 626, 643, 734, 1226
HpyF10VI GCNNNNNNNGC 6 cut(s) 325, 695, 821, 1097, 1196, 1686
HpyF3I CTNAG 5 cut(s) 1065, 1115, 1307, 1377, 1770
HpySE526I ACGT 2 cut(s) 84, 423
Hsp92I GRCGYC 1 cut(s) 592
HspAI GCGC 2 cut(s) 703, 1710
Ksp22I TGATCA 1 cut(s) 804
LmnI GCTCC 4 cut(s) 55, 165, 1704, 1779
Lsp1109I GCAGC 2 cut(s) 1492, 1732
LweI GCATC 5 cut(s) 135, 208, 477, 714, 966
MaeI CTAG 6 cut(s) 23, 206, 293, 818, 1154, 1840
MaeII ACGT 2 cut(s) 84, 423
MaeIII GTNAC 2 cut(s) 458, 756
MflI RGATCY 4 cut(s) 25, 339, 430, 1516
MhlI GDGCHC 2 cut(s) 248, 1046
MlsI TGGCCA 3 cut(s) 225, 600, 1199
MluCI AATT 5 cut(s) 50, 886, 1334, 1818, 1823
MluNI TGGCCA 3 cut(s) 225, 600, 1199
MlyI GAGTC 2 cut(s) 1495, 1597
MmeI TCCRAC 3 cut(s) 729, 1158, 1682
Mox20I TGGCCA 3 cut(s) 225, 600, 1199
Mph1103I ATGCAT 1 cut(s) 645
MscI TGGCCA 3 cut(s) 225, 600, 1199
MslI CAYNNNNRTG 3 cut(s) 473, 585, 867
Msp20I TGGCCA 3 cut(s) 225, 600, 1199
MspI CCGG 2 cut(s) 514, 839
MspR9I CCNGG 6 cut(s) 44, 286, 839, 915, 975, 1256
Mva1269I GAATGC 2 cut(s) 388, 643
MvaI CCWGG 5 cut(s) 44, 286, 915, 975, 1256
MvnI CGCG 2 cut(s) 525, 1710
MwoI GCNNNNNNNGC 6 cut(s) 325, 695, 821, 1097, 1196, 1686
NciI CCSGG 1 cut(s) 839
NcoI CCATGG 2 cut(s) 1200, 1777
NdeI CATATG 2 cut(s) 324, 1510
NmeAIII GCCGAG 1 cut(s) 1664
NruI TCGCGA 1 cut(s) 525
NsiI ATGCAT 1 cut(s) 645
NspI RCATGY 1 cut(s) 1177
NspV TTCGAA 1 cut(s) 1338
OliI CACNNNNGTG 1 cut(s) 585
PagI TCATGA 1 cut(s) 258
PaqCI CACCTGC 1 cut(s) 623
PceI AGGCCT 1 cut(s) 931
PciI ACATGT 1 cut(s) 1173
PctI GAATGC 2 cut(s) 388, 643
PfeI GAWTC 5 cut(s) 485, 782, 1015, 1445, 1799
PflMI CCANNNNNTGG 2 cut(s) 941, 1177
PfoI TCCNGGA 1 cut(s) 837
PkrI GCNGC 6 cut(s) 494, 1102, 1192, 1482, 1709, 1747
PleI GAGTC 2 cut(s) 1495, 1597
PpsI GAGTC 2 cut(s) 1495, 1597
Ppu21I YACGTR 1 cut(s) 85
PpuMI RGGWCCY 1 cut(s) 788
PscI ACATGT 1 cut(s) 1173
PshAI GACNNNNGTC 1 cut(s) 370
Psp5II RGGWCCY 1 cut(s) 788
Psp6I CCWGG 5 cut(s) 42, 284, 913, 973, 1254
PspFI CCCAGC 2 cut(s) 774, 1689
PspGI CCWGG 5 cut(s) 42, 284, 913, 973, 1254
PspOMI GGGCCC 2 cut(s) 244, 1042
PspPPI RGGWCCY 1 cut(s) 788
PstI CTGCAG 1 cut(s) 118
PsuI RGATCY 4 cut(s) 25, 339, 430, 1516
RruI TCGCGA 1 cut(s) 525
RsaI GTAC 1 cut(s) 1160
RsaNI GTAC 1 cut(s) 1159
RseI CAYNNNNRTG 3 cut(s) 473, 585, 867
SatI GCNGC 6 cut(s) 493, 1101, 1191, 1481, 1708, 1746
SchI GAGTC 2 cut(s) 1495, 1597
ScrFI CCNGG 6 cut(s) 44, 286, 839, 915, 975, 1256
SduI GDGCHC 2 cut(s) 248, 1046
SfaNI GCATC 5 cut(s) 135, 208, 477, 714, 966
SfcI CTRYAG 2 cut(s) 114, 1440
SfuI TTCGAA 1 cut(s) 1338
SinI GGWCC 5 cut(s) 7, 252, 788, 1665, 1813
SmiMI CAYNNNNRTG 3 cut(s) 473, 585, 867
SmlI CTYRAG 2 cut(s) 895, 1475
SmoI CTYRAG 2 cut(s) 895, 1475
Sse9I AATT 5 cut(s) 50, 886, 1334, 1818, 1823
SseBI AGGCCT 1 cut(s) 931
SspMI CTAG 6 cut(s) 23, 206, 293, 818, 1154, 1840
StuI AGGCCT 1 cut(s) 931
StyD4I CCNGG 6 cut(s) 42, 284, 837, 913, 973, 1254
StyI CCWWGG 5 cut(s) 248, 595, 1200, 1777, 1792
TaaI ACNGT 3 cut(s) 353, 756, 983
TaiI ACGT 2 cut(s) 87, 426
TaqI TCGA 8 cut(s) 30, 364, 1338, 1645, 1651, 1657, 1696, 1762
TasI AATT 5 cut(s) 50, 886, 1334, 1818, 1823
TauI GCSGC 4 cut(s) 495, 1103, 1193, 1710
TfiI GAWTC 5 cut(s) 485, 782, 1015, 1445, 1799
TscAI CASTG 3 cut(s) 871, 1222, 1576
TseI GCWGC 2 cut(s) 1480, 1745
TspDTI ATGAA 6 cut(s) 228, 554, 1092, 1405, 1527, 1717
TspGWI ACGGA 2 cut(s) 244, 461
TspRI CASTG 3 cut(s) 871, 1222, 1576
Van91I CCANNNNNTGG 2 cut(s) 941, 1177
VpaK11BI GGWCC 5 cut(s) 7, 252, 788, 1665, 1813
XapI RAATTY 1 cut(s) 1818
XbaI TCTAGA 3 cut(s) 205, 292, 817
XceI RCATGY 1 cut(s) 1177
XspI CTAG 6 cut(s) 23, 206, 293, 818, 1154, 1840
Zsp2I ATGCAT 1 cut(s) 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.