FvH4_4g06410

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000073
Physical Location & Seq
Forward (+)
5680008 .. 5682748
2741 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g06410.t1

Sequence Viewer

Length: 1335 bp
ATGCTGTGTACATGTTCAAAAGTGGCCAGAGCATCTAGCCAAGAGTTGCCAACCAACAATATTGCTTTCTGGGTCCAAATGAGAGGTGTGCCCCCCTATATGTTCGTTCAGTCAAATGTAGAGGAAATGGTGGAAAAGTTCGCAGATTTCATCAACATGGATGATCCTCTGGAGAATGCATATGGCATTTATAGTTTTCTGCGAGTCCGAATCATGTTTGATGGTAGGAGACCTCTACCTCCTAGCTTCAAGTTACCACGTGAGAACGGGGAACAATCATGGGTTGAGTTCAAATATGAGAAGCTATCTCGATTTTATTTCTGCTGCGGTCGGCTTGGGTATATTGAGACCGCGCAAAGTCCATGCCCATATGTGGATGAAGAGAGACTAGAAGATATTGTCTATGGTGAATGGATGATAACAAGTGCTTTCAAGCCATCAGCACAGAAAGCTCAAATGCAGATGATTCGGCCGGCGAGAAAACGGAGAAGTGCAGGCCAAAGAATTGAGCCGTTTTGTAGGCCAGAGTCTACACAAAGTTCACATTCCAATGAGAATCAGAGGCAAGTTGACCCAACAAGGAATCAACACCTTGGTCGAGCTGGCAATAGCGACAACACCCCAAGCTTCTCAGAGTTGTCACTGGCACATGAGCTGTCTTTGGGCCTTTCTAACAGGAAGGGAAATCTCAGAAACCACCAATACAGCCAGGTTAGAGAACATGACACATCTCTTTCACCTTTAAACTACTTGGCTCAAAATACCCAGTCCCCAACCCATCAAGCCTTTAACCGGATCCCAATTCACCATATCAATCAACAAATCCCACCTCCTAATAGCCAGATGTATGAGGGATCAACACCTCATCACAATTCCATGCAATCCCCCATACCTATCCCCACCAATTTAAACCCACCTTCTGTAGTCCACCAATCTCCAGACTTTTTCTCCCAGGATTTAAACTCCTCTATTACTAGTCTACCCCTCTCATTAAGGCAAATGGACCCCTCCACAGCTTTTAATTACCCACAACACCTCAGTCACCCGGTTCCCTCAAATCTTCCTACTACCTCTCTCTATAAGAGACCCACCCCGGTTGTGGCACTTGATCACATGACTCCTAAGAAAGCTAAAGGAAATCCAAAGCCTAGAGGTTTTACAAGGCTCCCAAGAAATAAATCCCCAGGTGGGAGTGAGCACAGCACAAGAGTTTCAAATGACGATGTTACGATTGGGGCGATCACCTCCAAGGCGGTGGTGGCTGGCCAACAACCACAAGGCCTCAATGATACACCTTTCTTGGAATTGTCATGGGCTAGGGCGCACCATGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1

Protein Analysis

445

Amino Acids

50.23

Weight (kDa)

8.93

Isoelectric Point (pI)

50.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 74 - 114 7.4e-10 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 530, 979
AccII CGCG 1 cut(s) 353
AciI CCGC 3 cut(s) 327, 351, 1253
AclWI GGATC 4 cut(s) 158, 790, 803, 862
AcoI YGGCCR 3 cut(s) 24, 470, 1264
AcvI CACGTG 1 cut(s) 260
AfaI GTAC 1 cut(s) 10
AfiI CCNNNNNNNGG 4 cut(s) 373, 792, 1099, 1188
AflIII ACRYGT 1 cut(s) 11
AgsI TTSAA 5 cut(s) 18, 250, 292, 433, 1215
AhlI ACTAGT 1 cut(s) 974
AjnI CCWGG 3 cut(s) 708, 951, 1183
AluBI AGCT 8 cut(s) 246, 304, 452, 602, 627, 655, 1016, 1130
AluI AGCT 8 cut(s) 246, 304, 452, 602, 627, 655, 1016, 1130
Alw21I GWGCWC 1 cut(s) 1200
Alw26I GTCTC 4 cut(s) 223, 341, 379, 1078
AlwI GGATC 4 cut(s) 158, 790, 803, 862
AoxI GGCC 7 cut(s) 24, 470, 496, 521, 664, 1264, 1279
ApeKI GCWGC 1 cut(s) 324
AspLEI GCGC 2 cut(s) 355, 1324
AspS9I GGNCC 3 cut(s) 73, 664, 1003
AsuC2I CCSGG 2 cut(s) 1046, 1094
AsuHPI GGTGA 5 cut(s) 419, 729, 797, 1034, 1234
AvaII GGWCC 2 cut(s) 73, 1003
BaeGI GKGCMC 1 cut(s) 93
BalI TGGCCA 2 cut(s) 26, 1266
BamHI GGATCC 1 cut(s) 795
BbrPI CACGTG 1 cut(s) 260
Bbv12I GWGCWC 1 cut(s) 1200
BbvI GCAGC 1 cut(s) 311
BccI CCATC 3 cut(s) 215, 445, 786
BceAI ACGGC 1 cut(s) 496
BcgI CGANNNNNNTGC 2 cut(s) 449, 483
BciT130I CCWGG 3 cut(s) 710, 953, 1185
BclI TGATCA 1 cut(s) 1108
BcnI CCSGG 2 cut(s) 1046, 1094
BcoDI GTCTC 4 cut(s) 223, 341, 379, 1078
BcuI ACTAGT 1 cut(s) 974
BfaI CTAG 7 cut(s) 36, 243, 389, 975, 1149, 1317, 1333
BfmI CTRYAG 1 cut(s) 921
BisI GCNGC 1 cut(s) 325
BlsI GCNGC 1 cut(s) 326
Bme1390I CCNGG 5 cut(s) 710, 953, 1046, 1094, 1185
Bme18I GGWCC 2 cut(s) 73, 1003
BmgT120I GGNCC 3 cut(s) 73, 664, 1003
BmiI GGNNCC 5 cut(s) 74, 797, 1005, 1050, 1166
BmrFI CCNGG 5 cut(s) 710, 953, 1046, 1094, 1185
BmrI ACTGGG 1 cut(s) 760
BmsI GCATC 1 cut(s) 41
BmuI ACTGGG 1 cut(s) 760
BpmI CTGGAG 2 cut(s) 191, 921
BpuMI CCSGG 2 cut(s) 1046, 1094
BsaAI YACGTR 1 cut(s) 260
BsaI GGTCTC 3 cut(s) 223, 341, 1078
BsaJI CCNNGG 5 cut(s) 592, 951, 1092, 1183, 1248
BsaWI WCCGGW 1 cut(s) 792
BsaXI ACNNNNNCTCC 2 cut(s) 932, 962
Bsc4I CCNNNNNNNGG 4 cut(s) 373, 792, 1099, 1188
Bse118I RCCGGY 1 cut(s) 472
Bse1I ACTGG 2 cut(s) 648, 766
BseBI CCWGG 3 cut(s) 710, 953, 1185
BseDI CCNNGG 5 cut(s) 592, 951, 1092, 1183, 1248
BseGI GGATG 3 cut(s) 166, 382, 420
BseLI CCNNNNNNNGG 4 cut(s) 373, 792, 1099, 1188
BseMII CTCAG 3 cut(s) 645, 703, 1051
BseNI ACTGG 2 cut(s) 648, 766
BseRI GAGGAG 1 cut(s) 955
BseSI GKGCMC 1 cut(s) 93
BseX3I CGGCCG 1 cut(s) 470
BseXI GCAGC 1 cut(s) 311
BsgI GTGCAG 1 cut(s) 513
Bsh1236I CGCG 1 cut(s) 353
Bsh1285I CGRYCG 2 cut(s) 331, 473
BshFI GGCC 7 cut(s) 26, 472, 498, 523, 666, 1266, 1281
BsiEI CGRYCG 2 cut(s) 331, 473
BsiHKAI GWGCWC 1 cut(s) 1200
BsiSI CCGG 4 cut(s) 473, 793, 1046, 1094
BslFI GGGAC 1 cut(s) 754
BslI CCNNNNNNNGG 4 cut(s) 373, 792, 1099, 1188
BsmAI GTCTC 4 cut(s) 223, 341, 379, 1078
BsmFI GGGAC 1 cut(s) 754
BsmI GAATGC 1 cut(s) 181
BsnI GGCC 7 cut(s) 26, 472, 498, 523, 666, 1266, 1281
Bso31I GGTCTC 3 cut(s) 223, 341, 1078
Bsp1286I GDGCHC 2 cut(s) 93, 1200
Bsp1407I TGTACA 1 cut(s) 8
Bsp143I GATC 5 cut(s) 163, 795, 854, 1108, 1239
BspACI CCGC 3 cut(s) 327, 351, 1253
BspANI GGCC 7 cut(s) 26, 472, 498, 523, 666, 1266, 1281
BspCNI CTCAG 3 cut(s) 644, 702, 1050
BspFNI CGCG 1 cut(s) 353
BspLI GGNNCC 5 cut(s) 74, 797, 1005, 1050, 1166
BspPI GGATC 4 cut(s) 158, 790, 803, 862
BspTNI GGTCTC 3 cut(s) 223, 341, 1078
BsrFI RCCGGY 1 cut(s) 472
BsrGI TGTACA 1 cut(s) 8
BsrI ACTGG 2 cut(s) 648, 766
BssAI RCCGGY 1 cut(s) 472
BssECI CCNNGG 5 cut(s) 592, 951, 1092, 1183, 1248
BssMI GATC 5 cut(s) 163, 795, 854, 1108, 1239
BssT1I CCWWGG 2 cut(s) 592, 1248
Bst2UI CCWGG 3 cut(s) 710, 953, 1185
Bst6I CTCTTC 1 cut(s) 375
BstAUI TGTACA 1 cut(s) 8
BstBAI YACGTR 1 cut(s) 260
BstC8I GCNNGC 4 cut(s) 474, 496, 604, 1264
BstDEI CTNAG 4 cut(s) 631, 689, 1037, 1122
BstF5I GGATG 3 cut(s) 166, 382, 420
BstFNI CGCG 1 cut(s) 353
BstHHI GCGC 2 cut(s) 355, 1324
BstKTI GATC 5 cut(s) 166, 798, 857, 1111, 1242
BstMAI GTCTC 4 cut(s) 223, 341, 379, 1078
BstMBI GATC 5 cut(s) 163, 795, 854, 1108, 1239
BstMCI CGRYCG 2 cut(s) 331, 473
BstMWI GCNNNNNNNGC 2 cut(s) 449, 1259
BstNI CCWGG 3 cut(s) 710, 953, 1185
BstNSI RCATGY 1 cut(s) 15
BstSCI CCNGG 5 cut(s) 708, 951, 1044, 1092, 1183
BstSFI CTRYAG 1 cut(s) 921
BstSLI GKGCMC 1 cut(s) 93
BstUI CGCG 1 cut(s) 353
BstV1I GCAGC 1 cut(s) 311
BstX2I RGATCY 1 cut(s) 795
BstXI CCANNNNNNTGG 1 cut(s) 1255
BstYI RGATCY 1 cut(s) 795
BstZI CGGCCG 1 cut(s) 470
BsuRI GGCC 7 cut(s) 26, 472, 498, 523, 666, 1266, 1281
BtsCI GGATG 3 cut(s) 166, 382, 420
BtsIMutI CAGTG 1 cut(s) 641
Cac8I GCNNGC 4 cut(s) 474, 496, 604, 1264
CfoI GCGC 2 cut(s) 355, 1324
Cfr10I RCCGGY 1 cut(s) 472
Cfr13I GGNCC 3 cut(s) 73, 664, 1003
Csp6I GTAC 1 cut(s) 9
CspCI CAANNNNNGTGG 2 cut(s) 1078, 1113
CviQI GTAC 1 cut(s) 9
DdeI CTNAG 4 cut(s) 631, 689, 1037, 1122
DpnI GATC 5 cut(s) 165, 797, 856, 1110, 1241
DpnII GATC 5 cut(s) 163, 795, 854, 1108, 1239
DraI TTTAAA 3 cut(s) 744, 909, 960
EaeI YGGCCR 3 cut(s) 24, 470, 1264
EagI CGGCCG 1 cut(s) 470
Eam1104I CTCTTC 1 cut(s) 375
EarI CTCTTC 1 cut(s) 375
EclXI CGGCCG 1 cut(s) 470
Eco130I CCWWGG 2 cut(s) 592, 1248
Eco147I AGGCCT 1 cut(s) 1281
Eco31I GGTCTC 3 cut(s) 223, 341, 1078
Eco47I GGWCC 2 cut(s) 73, 1003
Eco52I CGGCCG 1 cut(s) 470
Eco72I CACGTG 1 cut(s) 260
EcoRII CCWGG 3 cut(s) 708, 951, 1183
EcoT14I CCWWGG 2 cut(s) 592, 1248
EcoT22I ATGCAT 1 cut(s) 181
ErhI CCWWGG 2 cut(s) 592, 1248
FaqI GGGAC 1 cut(s) 754
FauNDI CATATG 2 cut(s) 181, 370
FbaI TGATCA 1 cut(s) 1108
FblI GTMKAC 2 cut(s) 530, 979
Fnu4HI GCNGC 1 cut(s) 325
FokI GGATG 3 cut(s) 173, 389, 427
Fsp4HI GCNGC 1 cut(s) 325
FspBI CTAG 7 cut(s) 36, 243, 389, 975, 1149, 1317, 1333
GlaI GCGC 2 cut(s) 354, 1323
GluI GCNGC 1 cut(s) 325
GsuI CTGGAG 2 cut(s) 191, 921
HaeIII GGCC 7 cut(s) 26, 472, 498, 523, 666, 1266, 1281
HapII CCGG 4 cut(s) 473, 793, 1046, 1094
HhaI GCGC 2 cut(s) 355, 1324
Hin6I GCGC 2 cut(s) 353, 1322
HinP1I GCGC 2 cut(s) 353, 1322
HincII GTYRAC 1 cut(s) 571
HindII GTYRAC 1 cut(s) 571
HindIII AAGCTT 1 cut(s) 625
HinfI GANTC 7 cut(s) 204, 210, 466, 527, 556, 583, 1117
HpaII CCGG 4 cut(s) 473, 793, 1046, 1094
HphI GGTGA 5 cut(s) 419, 729, 797, 1034, 1234
Hpy166II GTNNAC 6 cut(s) 9, 531, 542, 571, 928, 980
Hpy188I TCNGA 4 cut(s) 209, 561, 634, 692
Hpy188III TCNNGA 3 cut(s) 170, 309, 938
Hpy8I GTNNAC 6 cut(s) 9, 531, 542, 571, 928, 980
HpyAV CCTTC 2 cut(s) 673, 927
HpyCH4IV ACGT 1 cut(s) 259
HpyCH4V TGCA 4 cut(s) 179, 460, 494, 880
HpyF10VI GCNNNNNNNGC 2 cut(s) 449, 1259
HpyF3I CTNAG 4 cut(s) 631, 689, 1037, 1122
HpySE526I ACGT 1 cut(s) 259
HspAI GCGC 2 cut(s) 353, 1322
KroI GCCGGC 1 cut(s) 472
KroNI GCCGGC 1 cut(s) 474
Ksp22I TGATCA 1 cut(s) 1108
Kzo9I GATC 5 cut(s) 163, 795, 854, 1108, 1239
LmnI GCTCC 1 cut(s) 1170
Lsp1109I GCAGC 1 cut(s) 311
LweI GCATC 1 cut(s) 41
MaeI CTAG 7 cut(s) 36, 243, 389, 975, 1149, 1317, 1333
MaeII ACGT 1 cut(s) 259
MaeIII GTNAC 4 cut(s) 252, 639, 1040, 1225
MalI GATC 5 cut(s) 165, 797, 856, 1110, 1241
MboI GATC 5 cut(s) 163, 795, 854, 1108, 1239
MboII GAAGA 3 cut(s) 392, 404, 1052
MflI RGATCY 1 cut(s) 795
MhlI GDGCHC 2 cut(s) 93, 1200
MlsI TGGCCA 2 cut(s) 26, 1266
MluCI AATT 6 cut(s) 504, 801, 871, 904, 1021, 1304
MluNI TGGCCA 2 cut(s) 26, 1266
MlyI GAGTC 3 cut(s) 213, 536, 1111
Mox20I TGGCCA 2 cut(s) 26, 1266
Mph1103I ATGCAT 1 cut(s) 181
MroNI GCCGGC 1 cut(s) 472
MscI TGGCCA 2 cut(s) 26, 1266
MseI TTAA 6 cut(s) 743, 789, 908, 959, 992, 1020
MslI CAYNNNNRTG 2 cut(s) 155, 549
Msp20I TGGCCA 2 cut(s) 26, 1266
MspI CCGG 4 cut(s) 473, 793, 1046, 1094
MspR9I CCNGG 5 cut(s) 710, 953, 1046, 1094, 1185
Mva1269I GAATGC 1 cut(s) 181
MvaI CCWGG 3 cut(s) 710, 953, 1185
MvnI CGCG 1 cut(s) 353
MwoI GCNNNNNNNGC 2 cut(s) 449, 1259
NaeI GCCGGC 1 cut(s) 474
NciI CCSGG 2 cut(s) 1046, 1094
NdeI CATATG 2 cut(s) 181, 370
NdeII GATC 5 cut(s) 163, 795, 854, 1108, 1239
NgoMIV GCCGGC 1 cut(s) 472
NlaIV GGNNCC 5 cut(s) 74, 797, 1005, 1050, 1166
NmuCI GTSAC 2 cut(s) 639, 1040
NsiI ATGCAT 1 cut(s) 181
NspI RCATGY 1 cut(s) 15
PceI AGGCCT 1 cut(s) 1281
PciI ACATGT 1 cut(s) 11
PcsI WCGNNNNNNNCGW 1 cut(s) 1235
PctI GAATGC 1 cut(s) 181
PdiI GCCGGC 1 cut(s) 474
PfeI GAWTC 4 cut(s) 210, 466, 556, 583
PkrI GCNGC 1 cut(s) 326
PleI GAGTC 3 cut(s) 212, 535, 1111
PmaCI CACGTG 1 cut(s) 260
PmlI CACGTG 1 cut(s) 260
PpsI GAGTC 3 cut(s) 212, 535, 1111
Ppu21I YACGTR 1 cut(s) 260
PscI ACATGT 1 cut(s) 11
Psp6I CCWGG 3 cut(s) 708, 951, 1183
PspCI CACGTG 1 cut(s) 260
PspGI CCWGG 3 cut(s) 708, 951, 1183
PspN4I GGNNCC 5 cut(s) 74, 797, 1005, 1050, 1166
PspPI GGNCC 3 cut(s) 73, 664, 1003
PsuI RGATCY 1 cut(s) 795
RsaI GTAC 1 cut(s) 10
RsaNI GTAC 1 cut(s) 9
RseI CAYNNNNRTG 2 cut(s) 155, 549
SaqAI TTAA 6 cut(s) 743, 789, 908, 959, 992, 1020
SatI GCNGC 1 cut(s) 325
Sau3AI GATC 5 cut(s) 163, 795, 854, 1108, 1239
Sau96I GGNCC 3 cut(s) 73, 664, 1003
SchI GAGTC 3 cut(s) 213, 536, 1111
ScrFI CCNGG 5 cut(s) 710, 953, 1046, 1094, 1185
SduI GDGCHC 2 cut(s) 93, 1200
SfaNI GCATC 1 cut(s) 41
SfcI CTRYAG 1 cut(s) 921
SinI GGWCC 2 cut(s) 73, 1003
SmiMI CAYNNNNRTG 2 cut(s) 155, 549
SpeI ACTAGT 1 cut(s) 974
Sse9I AATT 6 cut(s) 504, 801, 871, 904, 1021, 1304
SseBI AGGCCT 1 cut(s) 1281
SsiI CCGC 3 cut(s) 327, 351, 1253
SspI AATATT 1 cut(s) 61
SspMI CTAG 7 cut(s) 36, 243, 389, 975, 1149, 1317, 1333
StuI AGGCCT 1 cut(s) 1281
StyD4I CCNGG 5 cut(s) 708, 951, 1044, 1092, 1183
StyI CCWWGG 2 cut(s) 592, 1248
TaiI ACGT 1 cut(s) 262
TaqI TCGA 2 cut(s) 310, 598
TasI AATT 6 cut(s) 504, 801, 871, 904, 1021, 1304
TatI WGTACW 1 cut(s) 8
TfiI GAWTC 4 cut(s) 210, 466, 556, 583
Tru1I TTAA 6 cut(s) 743, 789, 908, 959, 992, 1020
Tru9I TTAA 6 cut(s) 743, 789, 908, 959, 992, 1020
TscAI CASTG 1 cut(s) 648
TseFI GTSAC 2 cut(s) 639, 1040
TseI GCWGC 1 cut(s) 324
Tsp45I GTSAC 2 cut(s) 639, 1040
TspDTI ATGAA 2 cut(s) 139, 393
TspGWI ACGGA 1 cut(s) 499
TspRI CASTG 1 cut(s) 648
VpaK11BI GGWCC 2 cut(s) 73, 1003
XceI RCATGY 1 cut(s) 15
XcmI CCANNNNNNNNNTGG 2 cut(s) 1096, 1255
XmiI GTMKAC 2 cut(s) 530, 979
XspI CTAG 7 cut(s) 36, 243, 389, 975, 1149, 1317, 1333
Zsp2I ATGCAT 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.