RchiOBHm_Chr5g0005991

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000073
Physical Location & Seq
Forward (+)
3743665 .. 3745888
2224 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28715

Sequence Viewer

Length: 1731 bp
ATGGCTTCATCCTCAAATGGTGGTGGTGATATTCCATTTGAAGATGAGGAAATCATTGAGGCTATGTCCATCAATTTCGAAAATAGCGTCGATTTCGTAGACCTGGAGTATGGGATAAACCTGGTGGGTACCCTAATTGCAGATGAAGAACCGGGTCTAGGTGGGACTAAGGCAGCTATCATGAGTATGTGGAAGACACTTGGTCAAGTCAGAATCATCAGGGTTAAGAAGAATGTCTATTCCCTAACAGTTGGTTCAGAAAAGCTTGCAACCAAGTTAATCGATGACAGTCCATGGAACGTCAAGGGTTATTGTTTCACGGTACGTCACTGGCCACCTCGCCATGCTATTGATGATCTTGAGCCACACAGAGCTACCTATTGGATACAAGCACATGGTATTCCAATGGACCAGATATCTACTCATAATGGAAGAAAGCTGGGCAATCTCTTGGGCTCAGTTATTGATGTGGAAGATCCTCGAGTCTATGGGAACAGAGGATTTATGAGGATTAGAGTGGATTTTGATACCAGAAGACCTCTAGCTACCTTCTGCCAGCTTCCTAGAAATAACTCTGCTACGACAAAGATCAGACTACGTTATGAGAACCTGAAATGCTTCTGCTTCAAGTGCGGGAGGCTAGGCCATATGGTGACTGCGTGCAGATACCAGGTAAACCCAATTCTGCTGAAACTTGGGGTTGTGTATGATAACTCTCTGGTTGCTGAACCTCTACAGAAACCAGTGTTCACACAAGCACACTTTCCACCGGATTTCCCTTATGCTCCGACAACCGGAATATTCCGACGGAGCAGGAAGGAGATTCCAAACAAATTCAAATATATGGGTGTCAGACATGATGTGACAGAGGATACTTGTGAGGGAGAAGGGTCCAAATCTAAACTCTGCTCAAGGCTTGAAAATGATGGCCCTTCCTCACCAATTATGTCAGATGGTCAACTTTCTGTGTCAACAAAGGGGATACAAGGAAAAAGAACCACTAAGCAGTGGGTAGACATGTGGGATCCTGACACACATGGCTCACTATACAGGAATGGGAGTGTTACCGTTGCAATGAATGGGCTGAGCATCAGGCCCAACTCCTGGGCTGATCCCGAGTGCATCCCTCCTTGGGCCTTCAAGAATAAGGAGGACTTCCTTCGAGCTAACCCAATGTTTCCTGTTCCTGGCTACATTGAGGTTGAGCTGGAGCCCACTATCACCCCACCCAAATTTACCTCACCAAAAATTGTTGAGTTACAGCAATCTGTCCCCCCTCTGGACTCATCCACTTTTCGAAAAAGGAAAATAATTCTGGAGACTGGAGACGAGGAGGAGAAGCACTCCAAAAACAAGAAAACAAAGAAGATGCGTTGCCCAGGGCTGAATCCCTCTACAGGAGGTAATAGTGGAAGAGGTAGAGGAAGGGGATGTAGAGGGAGAGGAAAGGGGGGACATGATGTTGCTGATAATGATATGAAGGACACTTTGTTAGAAATAAAGAACAGAGGAAGAAAAAGAAGCAGAGGGAACAAAGGAGGAAAAGGAAAAGGGAGAGGAAGTGTATCGGTGTCGGCTGAGTTTATCTCTGGTTTACTTGATGAGTCCTACTCAGCACCCACAGCTGAAAATACTCATGTTGCAGTAGCTATTGTGGAAGAAGGTATGGAGGACGTAACCCACCTCCAGGGCTGTGGCGGCTGGCCGAATTCAGCTGCAAGGAACCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_3 zf-CCHC_4

Protein Analysis

576

Amino Acids

63.96

Weight (kDa)

9.01

Isoelectric Point (pI)

35.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 41 - 116 5.3e-07 Domain of unknown function (DUF4283)
zf-CCHC_4 PF14392 175 - 223 1.6e-08 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 128
AccB1I GGYRCC 1 cut(s) 128
AccB7I CCANNNNNTGG 1 cut(s) 1104
AccI GTMKAC 2 cut(s) 99, 1014
AciI CCGC 2 cut(s) 633, 1698
AclWI GGATC 4 cut(s) 470, 1019, 1032, 1106
AcoI YGGCCR 2 cut(s) 332, 1703
AcsI RAATTY 3 cut(s) 833, 1232, 1708
AfaI GTAC 2 cut(s) 130, 324
AfiI CCNNNNNNNGG 8 cut(s) 158, 794, 1104, 1132, 1187, 1279, 1397, 1687
AflIII ACRYGT 1 cut(s) 1017
AgsI TTSAA 5 cut(s) 41, 628, 838, 920, 1141
AhdI GACNNNNNGTC 1 cut(s) 201
AjnI CCWGG 7 cut(s) 102, 120, 669, 1103, 1186, 1378, 1686
Alw26I GTCTC 2 cut(s) 1313, 1320
AlwI GGATC 4 cut(s) 470, 1019, 1032, 1106
Ama87I CYCGRG 2 cut(s) 480, 1115
AoxI GGCC 6 cut(s) 332, 643, 928, 1094, 1134, 1703
ApeKI GCWGC 2 cut(s) 173, 1715
ApoI RAATTY 3 cut(s) 833, 1232, 1708
ArsI GACNNNNNNTTYG 2 cut(s) 72, 104
Asp700I GAANNNNTTC 1 cut(s) 617
Asp718I GGTACC 1 cut(s) 128
AspS9I GGNCC 5 cut(s) 409, 891, 929, 1095, 1134
AsuC2I CCSGG 1 cut(s) 153
AsuHPI GGTGA 5 cut(s) 38, 664, 930, 1213, 1233
AsuII TTCGAA 2 cut(s) 78, 1297
AvaI CYCGRG 2 cut(s) 480, 1115
AvaII GGWCC 2 cut(s) 409, 891
BalI TGGCCA 1 cut(s) 334
BamHI GGATCC 1 cut(s) 1024
BanI GGYRCC 1 cut(s) 128
BanII GRGCYC 2 cut(s) 458, 1215
BbsI GAAGAC 2 cut(s) 200, 541
BbvI GCAGC 2 cut(s) 185, 1702
BccI CCATC 3 cut(s) 77, 920, 947
BciT130I CCWGG 7 cut(s) 104, 122, 671, 1105, 1188, 1380, 1688
BciVI GTATCC 3 cut(s) 378, 865, 975
BcnI CCSGG 1 cut(s) 153
BcoDI GTCTC 2 cut(s) 1313, 1320
BfaI CTAG 4 cut(s) 158, 542, 564, 641
BfmI CTRYAG 2 cut(s) 734, 1395
BfuI GTATCC 3 cut(s) 378, 865, 975
BisI GCNGC 3 cut(s) 174, 1699, 1716
BlpI GCTNAGC 1 cut(s) 1085
BlsI GCNGC 3 cut(s) 175, 1700, 1717
Bme1390I CCNGG 8 cut(s) 104, 122, 153, 671, 1105, 1188, 1380, 1688
Bme18I GGWCC 2 cut(s) 409, 891
BmeRI GACNNNNNGTC 1 cut(s) 201
BmeT110I CYCGRG 2 cut(s) 480, 1115
BmgT120I GGNCC 5 cut(s) 409, 891, 929, 1095, 1134
BmiI GGNNCC 5 cut(s) 130, 892, 1026, 1212, 1724
BmrFI CCNGG 8 cut(s) 104, 122, 153, 671, 1105, 1188, 1380, 1688
BmsI GCATC 3 cut(s) 1098, 1131, 1359
BpiI GAAGAC 2 cut(s) 200, 541
BplI GAGNNNNNCTC 6 cut(s) 1328, 1360, 1571, 1603, 1595, 1627
BpmI CTGGAG 5 cut(s) 125, 1229, 1337, 1344, 1670
Bpu1102I GCTNAGC 1 cut(s) 1085
Bpu14I TTCGAA 2 cut(s) 78, 1297
BpuEI CTTGAG 2 cut(s) 380, 895
BpuMI CCSGG 1 cut(s) 153
Bsa29I ATCGAT 1 cut(s) 282
BsaJI CCNNGG 6 cut(s) 293, 1104, 1130, 1378, 1379, 1687
BsaWI WCCGGW 2 cut(s) 769, 794
BsaXI ACNNNNNCTCC 2 cut(s) 1546, 1576
Bsc4I CCNNNNNNNGG 8 cut(s) 158, 794, 1104, 1132, 1187, 1279, 1397, 1687
Bse1I ACTGG 3 cut(s) 335, 743, 1327
Bse3DI GCAATG 1 cut(s) 1080
BseBI CCWGG 7 cut(s) 104, 122, 671, 1105, 1188, 1380, 1688
BseCI ATCGAT 1 cut(s) 282
BseDI CCNNGG 6 cut(s) 293, 1104, 1130, 1378, 1379, 1687
BseGI GGATG 4 cut(s) 8, 1122, 1286, 1436
BseLI CCNNNNNNNGG 8 cut(s) 158, 794, 1104, 1132, 1187, 1279, 1397, 1687
BseMI GCAATG 1 cut(s) 1080
BseMII CTCAG 4 cut(s) 471, 1076, 1569, 1626
BseNI ACTGG 3 cut(s) 335, 743, 1327
BseRI GAGGAG 2 cut(s) 1346, 1349
BseXI GCAGC 2 cut(s) 185, 1702
BseYI CCCAGC 1 cut(s) 439
BsgI GTGCAG 1 cut(s) 682
BshFI GGCC 6 cut(s) 334, 645, 930, 1096, 1136, 1705
BshNI GGYRCC 1 cut(s) 128
BshVI ATCGAT 1 cut(s) 282
BsiHKCI CYCGRG 2 cut(s) 480, 1115
BsiSI CCGG 3 cut(s) 152, 770, 795
BslFI GGGAC 3 cut(s) 178, 1256, 1467
BslI CCNNNNNNNGG 8 cut(s) 158, 794, 1104, 1132, 1187, 1279, 1397, 1687
BsmAI GTCTC 2 cut(s) 1313, 1320
BsmBI CGTCTC 1 cut(s) 1320
BsmFI GGGAC 3 cut(s) 178, 1256, 1467
BsnI GGCC 6 cut(s) 334, 645, 930, 1096, 1136, 1705
BsoBI CYCGRG 2 cut(s) 480, 1115
Bsp119I TTCGAA 2 cut(s) 78, 1297
Bsp1286I GDGCHC 2 cut(s) 458, 1215
Bsp143I GATC 5 cut(s) 355, 475, 588, 1024, 1111
Bsp1720I GCTNAGC 1 cut(s) 1085
Bsp19I CCATGG 1 cut(s) 293
BspACI CCGC 2 cut(s) 633, 1698
BspANI GGCC 6 cut(s) 334, 645, 930, 1096, 1136, 1705
BspCNI CTCAG 4 cut(s) 470, 1077, 1570, 1625
BspDI ATCGAT 1 cut(s) 282
BspHI TCATGA 1 cut(s) 180
BspLI GGNNCC 5 cut(s) 130, 892, 1026, 1212, 1724
BspPI GGATC 4 cut(s) 470, 1019, 1032, 1106
BspT104I TTCGAA 2 cut(s) 78, 1297
BspT107I GGYRCC 1 cut(s) 128
BsrDI GCAATG 1 cut(s) 1080
BsrI ACTGG 3 cut(s) 335, 743, 1327
BssECI CCNNGG 6 cut(s) 293, 1104, 1130, 1378, 1379, 1687
BssMI GATC 5 cut(s) 355, 475, 588, 1024, 1111
BssT1I CCWWGG 2 cut(s) 293, 1130
Bst2UI CCWGG 7 cut(s) 104, 122, 671, 1105, 1188, 1380, 1688
Bst4CI ACNGT 4 cut(s) 250, 290, 322, 1069
Bst6I CTCTTC 1 cut(s) 1408
BstBI TTCGAA 2 cut(s) 78, 1297
BstC8I GCNNGC 4 cut(s) 267, 557, 661, 1703
BstDEI CTNAG 6 cut(s) 168, 457, 1002, 1085, 1578, 1612
BstDSI CCRYGG 1 cut(s) 293
BstF5I GGATG 4 cut(s) 8, 1122, 1286, 1436
BstKTI GATC 5 cut(s) 358, 478, 591, 1027, 1114
BstMAI GTCTC 2 cut(s) 1313, 1320
BstMBI GATC 5 cut(s) 355, 475, 588, 1024, 1111
BstMWI GCNNNNNNNGC 3 cut(s) 630, 1622, 1698
BstNI CCWGG 7 cut(s) 104, 122, 671, 1105, 1188, 1380, 1688
BstNSI RCATGY 1 cut(s) 1021
BstSCI CCNGG 8 cut(s) 102, 120, 151, 669, 1103, 1186, 1378, 1686
BstSFI CTRYAG 2 cut(s) 734, 1395
BstV1I GCAGC 2 cut(s) 185, 1702
BstV2I GAAGAC 2 cut(s) 200, 541
BstX2I RGATCY 2 cut(s) 475, 1024
BstXI CCANNNNNNTGG 1 cut(s) 1694
BstYI RGATCY 2 cut(s) 475, 1024
Bsu15I ATCGAT 1 cut(s) 282
BsuI GTATCC 3 cut(s) 378, 865, 975
BsuRI GGCC 6 cut(s) 334, 645, 930, 1096, 1136, 1705
BsuTUI ATCGAT 1 cut(s) 282
BtgI CCRYGG 1 cut(s) 293
BtsCI GGATG 4 cut(s) 8, 1122, 1286, 1436
BtsI GCAGTG 1 cut(s) 1013
BtsIMutI CAGTG 3 cut(s) 328, 750, 1013
Cac8I GCNNGC 4 cut(s) 267, 557, 661, 1703
CciI TCATGA 1 cut(s) 180
Cfr13I GGNCC 5 cut(s) 409, 891, 929, 1095, 1134
ClaI ATCGAT 1 cut(s) 282
CseI GACGC 1 cut(s) 76
CsiI ACCWGGT 2 cut(s) 120, 669
Csp6I GTAC 2 cut(s) 129, 323
CviAII CATG 9 cut(s) 181, 294, 344, 395, 857, 1018, 1037, 1457, 1637
CviQI GTAC 2 cut(s) 129, 323
DdeI CTNAG 6 cut(s) 168, 457, 1002, 1085, 1578, 1612
DpnI GATC 5 cut(s) 357, 477, 590, 1026, 1113
DpnII GATC 5 cut(s) 355, 475, 588, 1024, 1111
DriI GACNNNNNGTC 1 cut(s) 201
EaeI YGGCCR 2 cut(s) 332, 1703
Eam1104I CTCTTC 1 cut(s) 1408
Eam1105I GACNNNNNGTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 1408
Eco130I CCWWGG 2 cut(s) 293, 1130
Eco24I GRGCYC 2 cut(s) 458, 1215
Eco32I GATATC 1 cut(s) 417
Eco47I GGWCC 2 cut(s) 409, 891
Eco88I CYCGRG 2 cut(s) 480, 1115
EcoRI GAATTC 1 cut(s) 1708
EcoRII CCWGG 7 cut(s) 102, 120, 669, 1103, 1186, 1378, 1686
EcoRV GATATC 1 cut(s) 417
EcoT14I CCWWGG 2 cut(s) 293, 1130
EcoT38I GRGCYC 2 cut(s) 458, 1215
ErhI CCWWGG 2 cut(s) 293, 1130
Esp3I CGTCTC 1 cut(s) 1320
FaeI CATG 9 cut(s) 184, 297, 347, 398, 860, 1021, 1040, 1460, 1640
FalI AAGNNNNNCTT 2 cut(s) 1139, 1171
FaqI GGGAC 3 cut(s) 178, 1256, 1467
FatI CATG 9 cut(s) 180, 293, 343, 394, 856, 1017, 1036, 1456, 1636
FauI CCCGC 1 cut(s) 626
FauNDI CATATG 1 cut(s) 648
FblI GTMKAC 2 cut(s) 99, 1014
Fnu4HI GCNGC 3 cut(s) 174, 1699, 1716
FokI GGATG 3 cut(s) 1109, 1273, 1443
FriOI GRGCYC 2 cut(s) 458, 1215
Fsp4HI GCNGC 3 cut(s) 174, 1699, 1716
FspBI CTAG 4 cut(s) 158, 542, 564, 641
GluI GCNGC 3 cut(s) 174, 1699, 1716
GsaI CCCAGC 1 cut(s) 443
GsuI CTGGAG 5 cut(s) 125, 1229, 1337, 1344, 1670
HaeIII GGCC 6 cut(s) 334, 645, 930, 1096, 1136, 1705
HapII CCGG 3 cut(s) 152, 770, 795
HgaI GACGC 1 cut(s) 76
Hin1II CATG 9 cut(s) 184, 297, 347, 398, 860, 1021, 1040, 1460, 1640
HincII GTYRAC 2 cut(s) 959, 972
HindII GTYRAC 2 cut(s) 959, 972
HindIII AAGCTT 1 cut(s) 263
HinfI GANTC 6 cut(s) 213, 483, 823, 1283, 1387, 1604
HpaII CCGG 3 cut(s) 152, 770, 795
HphI GGTGA 5 cut(s) 38, 664, 930, 1213, 1233
Hpy166II GTNNAC 7 cut(s) 100, 676, 750, 959, 972, 1015, 1595
Hpy188I TCNGA 7 cut(s) 212, 259, 593, 789, 806, 854, 952
Hpy188III TCNNGA 7 cut(s) 181, 359, 1028, 1115, 1141, 1280, 1316
Hpy8I GTNNAC 7 cut(s) 100, 676, 750, 959, 972, 1015, 1595
Hpy99I CGWCG 2 cut(s) 92, 810
HpyAV CCTTC 9 cut(s) 559, 811, 881, 942, 1147, 1169, 1419, 1474, 1655
HpyCH4III ACNGT 4 cut(s) 250, 290, 322, 1069
HpyCH4IV ACGT 4 cut(s) 300, 325, 598, 1674
HpyCH4V TGCA 7 cut(s) 140, 269, 663, 1073, 1122, 1643, 1718
HpyF10VI GCNNNNNNNGC 3 cut(s) 630, 1622, 1698
HpyF3I CTNAG 6 cut(s) 168, 457, 1002, 1085, 1578, 1612
HpySE526I ACGT 4 cut(s) 300, 325, 598, 1674
Hsp92II CATG 9 cut(s) 184, 297, 347, 398, 860, 1021, 1040, 1460, 1640
KpnI GGTACC 1 cut(s) 132
Kzo9I GATC 5 cut(s) 355, 475, 588, 1024, 1111
LmnI GCTCC 3 cut(s) 790, 810, 1210
Lsp1109I GCAGC 2 cut(s) 185, 1702
LweI GCATC 3 cut(s) 1098, 1131, 1359
MabI ACCWGGT 2 cut(s) 120, 669
MaeI CTAG 4 cut(s) 158, 542, 564, 641
MaeII ACGT 4 cut(s) 300, 325, 598, 1674
MaeIII GTNAC 6 cut(s) 326, 652, 862, 1063, 1257, 1675
MalI GATC 5 cut(s) 357, 477, 590, 1026, 1113
MboI GATC 5 cut(s) 355, 475, 588, 1024, 1111
MflI RGATCY 2 cut(s) 475, 1024
MhlI GDGCHC 2 cut(s) 458, 1215
MlsI TGGCCA 1 cut(s) 334
MluCI AATT 9 cut(s) 73, 135, 681, 833, 942, 1232, 1248, 1311, 1708
MluNI TGGCCA 1 cut(s) 334
MlyI GAGTC 3 cut(s) 492, 1277, 1613
MmeI TCCRAC 2 cut(s) 812, 829
Mox20I TGGCCA 1 cut(s) 334
MroXI GAANNNNTTC 1 cut(s) 617
MscI TGGCCA 1 cut(s) 334
MseI TTAA 2 cut(s) 225, 278
MslI CAYNNNNRTG 1 cut(s) 185
Msp20I TGGCCA 1 cut(s) 334
MspA1I CMGCKG 2 cut(s) 1625, 1715
MspI CCGG 3 cut(s) 152, 770, 795
MspR9I CCNGG 8 cut(s) 104, 122, 153, 671, 1105, 1188, 1380, 1688
MvaI CCWGG 7 cut(s) 104, 122, 671, 1105, 1188, 1380, 1688
MwoI GCNNNNNNNGC 3 cut(s) 630, 1622, 1698
NciI CCSGG 1 cut(s) 153
NcoI CCATGG 1 cut(s) 293
NdeI CATATG 1 cut(s) 648
NdeII GATC 5 cut(s) 355, 475, 588, 1024, 1111
NlaIII CATG 9 cut(s) 184, 297, 347, 398, 860, 1021, 1040, 1460, 1640
NlaIV GGNNCC 5 cut(s) 130, 892, 1026, 1212, 1724
NmuCI GTSAC 3 cut(s) 326, 652, 862
NspI RCATGY 1 cut(s) 1021
NspV TTCGAA 2 cut(s) 78, 1297
PaeR7I CTCGAG 1 cut(s) 480
PagI TCATGA 1 cut(s) 180
PasI CCCWGGG 1 cut(s) 1379
PciI ACATGT 1 cut(s) 1017
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PdmI GAANNNNTTC 1 cut(s) 617
PfeI GAWTC 3 cut(s) 213, 823, 1387
PflMI CCANNNNNTGG 1 cut(s) 1104
PkrI GCNGC 3 cut(s) 175, 1700, 1717
PleI GAGTC 3 cut(s) 491, 1277, 1612
PpsI GAGTC 3 cut(s) 491, 1277, 1612
PscI ACATGT 1 cut(s) 1017
Psp6I CCWGG 7 cut(s) 102, 120, 669, 1103, 1186, 1378, 1686
PspFI CCCAGC 1 cut(s) 439
PspGI CCWGG 7 cut(s) 102, 120, 669, 1103, 1186, 1378, 1686
PspN4I GGNNCC 5 cut(s) 130, 892, 1026, 1212, 1724
PspPI GGNCC 5 cut(s) 409, 891, 929, 1095, 1134
PspXI VCTCGAGB 1 cut(s) 480
PsuI RGATCY 2 cut(s) 475, 1024
PvuII CAGCTG 2 cut(s) 1625, 1715
RsaI GTAC 2 cut(s) 130, 324
RsaNI GTAC 2 cut(s) 129, 323
RseI CAYNNNNRTG 1 cut(s) 185
SaqAI TTAA 2 cut(s) 225, 278
SatI GCNGC 3 cut(s) 174, 1699, 1716
Sau3AI GATC 5 cut(s) 355, 475, 588, 1024, 1111
Sau96I GGNCC 5 cut(s) 409, 891, 929, 1095, 1134
SchI GAGTC 3 cut(s) 492, 1277, 1613
ScrFI CCNGG 8 cut(s) 104, 122, 153, 671, 1105, 1188, 1380, 1688
SduI GDGCHC 2 cut(s) 458, 1215
SexAI ACCWGGT 2 cut(s) 120, 669
SfaNI GCATC 3 cut(s) 1098, 1131, 1359
SfcI CTRYAG 2 cut(s) 734, 1395
Sfr274I CTCGAG 1 cut(s) 480
SfuI TTCGAA 2 cut(s) 78, 1297
SinI GGWCC 2 cut(s) 409, 891
SlaI CTCGAG 1 cut(s) 480
SmiMI CAYNNNNRTG 1 cut(s) 185
SmlI CTYRAG 3 cut(s) 359, 480, 910
SmoI CTYRAG 3 cut(s) 359, 480, 910
Sse9I AATT 9 cut(s) 73, 135, 681, 833, 942, 1232, 1248, 1311, 1708
SsiI CCGC 2 cut(s) 633, 1698
SspI AATATT 1 cut(s) 801
SspMI CTAG 4 cut(s) 158, 542, 564, 641
StyD4I CCNGG 8 cut(s) 102, 120, 151, 669, 1103, 1186, 1378, 1686
StyI CCWWGG 2 cut(s) 293, 1130
TaaI ACNGT 4 cut(s) 250, 290, 322, 1069
TaiI ACGT 4 cut(s) 303, 328, 601, 1677
TaqI TCGA 6 cut(s) 78, 90, 282, 481, 1162, 1297
TasI AATT 9 cut(s) 73, 135, 681, 833, 942, 1232, 1248, 1311, 1708
TauI GCSGC 1 cut(s) 1701
TfiI GAWTC 3 cut(s) 213, 823, 1387
Tru1I TTAA 2 cut(s) 225, 278
Tru9I TTAA 2 cut(s) 225, 278
TscAI CASTG 3 cut(s) 335, 750, 1013
TseFI GTSAC 3 cut(s) 326, 652, 862
TseI GCWGC 2 cut(s) 173, 1715
Tsp45I GTSAC 3 cut(s) 326, 652, 862
TspDTI ATGAA 3 cut(s) 159, 1091, 1493
TspGWI ACGGA 1 cut(s) 823
TspRI CASTG 3 cut(s) 335, 750, 1013
Van91I CCANNNNNTGG 1 cut(s) 1104
VpaK11BI GGWCC 2 cut(s) 409, 891
XapI RAATTY 3 cut(s) 833, 1232, 1708
XceI RCATGY 1 cut(s) 1021
XhoI CTCGAG 1 cut(s) 480
XmiI GTMKAC 2 cut(s) 99, 1014
XmnI GAANNNNTTC 1 cut(s) 617
XspI CTAG 4 cut(s) 158, 542, 564, 641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.