RLG00000025697

Belongs to the ubiquitin-conjugating enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0001877
Physical Location & Seq
Reverse (-)
47699439 .. 47700412
974 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025697

Sequence Viewer

Length: 699 bp
ATGCTGCGGATTGAAGAAGACCCGCCTCCGGGTGTGGAGATGAGTATGGTGCTACCTGACCTGGACAGACTGCGGCTTGTACAAGACCCACCTGCTGGCGCGGAGATTAGTATGGTGCTCCCAGGTTTGGACAGATTGCGGCTTGTAGAACACTCAACCGCAGGCGAGGAGGATGTTTTTGCAAGGCTGCAGAAAAAAGTGTTGGATTACCCACCCCCGGGCGCAGATTATACTCGTGCAAGGTATAGGCTGTTTAAAGAGTTGAAGCGGCTGCTACAAGACCCACCTGCAGGGATCAGTGTGGTTCCCCCGGACTTCTACAATTGCGATATAATGTTGTGGAATGTTGTTATAGCTCCTCACTCCTTGGATTCTCCTTGGGAGGGAGGCGCATTTAAGTTGACTCTTCAGTTTAGTGAGGATTATCCACTCAAACCACCAATGGTGCGATTTGTTTCTCAAATGTTTCATCCAAACATTTCTGCAGATGGAATTATGTCTTTTAATAATTTACTGGATCGGTGGCCTTCTATAAATGATGTGGAAGATATACTCAAGTATATCCAGTCCCTAATATGTCATCCCAACCCGAAGTGTCCTGCAAATTCTGAAGCTTTCTACATGTACTTCAGCGAGAACAGACTGGAGTACAACCGAAGAGTGAGGATGATCGTGGATCAGAGTTGGATGGCAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
UQ_con

Protein Analysis

233

Amino Acids

26.71

Weight (kDa)

4.99

Isoelectric Point (pI)

63.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UQ_con PF00179 83 - 223 3.4e-33 Ubiquitin-conjugating enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 100, 295
Acc36I ACCTGC 2 cut(s) 100, 295
AccB7I CCANNNNNTGG 1 cut(s) 95
AccII CGCG 1 cut(s) 101
AciI CCGC 7 cut(s) 7, 23, 73, 101, 139, 159, 268
AclWI GGATC 3 cut(s) 302, 525, 684
AcsI RAATTY 1 cut(s) 604
AcuI CTGAAG 3 cut(s) 392, 613, 630
AfaI GTAC 3 cut(s) 81, 626, 650
AfiI CCNNNNNNNGG 8 cut(s) 28, 29, 95, 127, 217, 218, 290, 383
AflIII ACRYGT 1 cut(s) 621
AgsI TTSAA 2 cut(s) 14, 265
AjnI CCWGG 2 cut(s) 60, 121
AjuI GAANNNNNNNTTGG 2 cut(s) 185, 217
AluBI AGCT 2 cut(s) 356, 614
AluI AGCT 2 cut(s) 356, 614
Alw21I GWGCWC 1 cut(s) 120
AlwI GGATC 3 cut(s) 302, 525, 684
Ama87I CYCGRG 1 cut(s) 217
AoxI GGCC 1 cut(s) 524
ApeKI GCWGC 3 cut(s) 4, 187, 271
ApoI RAATTY 1 cut(s) 604
AspLEI GCGC 3 cut(s) 101, 224, 392
AsuC2I CCSGG 4 cut(s) 30, 218, 219, 311
AvaI CYCGRG 1 cut(s) 217
BauI CACGAG 1 cut(s) 234
BbsI GAAGAC 1 cut(s) 24
Bbv12I GWGCWC 1 cut(s) 120
BbvI GCAGC 2 cut(s) 174, 258
BccI CCATC 2 cut(s) 482, 682
BciT130I CCWGG 2 cut(s) 62, 123
BcnI CCSGG 4 cut(s) 30, 218, 219, 311
BfaI CTAG 1 cut(s) 697
BfmI CTRYAG 3 cut(s) 188, 288, 483
BfuAI ACCTGC 2 cut(s) 100, 295
BisI GCNGC 6 cut(s) 5, 74, 140, 188, 269, 272
BlsI GCNGC 6 cut(s) 6, 75, 141, 189, 270, 273
Bme1390I CCNGG 6 cut(s) 30, 62, 123, 218, 219, 311
BmeT110I CYCGRG 1 cut(s) 217
BmiI GGNNCC 1 cut(s) 306
BmrFI CCNGG 6 cut(s) 30, 62, 123, 218, 219, 311
BpiI GAAGAC 1 cut(s) 24
BpmI CTGGAG 1 cut(s) 665
BpuEI CTTGAG 1 cut(s) 539
BpuMI CCSGG 4 cut(s) 30, 218, 219, 311
BsaJI CCNNGG 6 cut(s) 121, 216, 217, 309, 366, 377
Bsc4I CCNNNNNNNGG 8 cut(s) 28, 29, 95, 127, 217, 218, 290, 383
Bse1I ACTGG 3 cut(s) 519, 565, 648
BseBI CCWGG 2 cut(s) 62, 123
BseDI CCNNGG 6 cut(s) 121, 216, 217, 309, 366, 377
BseGI GGATG 5 cut(s) 178, 469, 580, 672, 693
BseLI CCNNNNNNNGG 8 cut(s) 28, 29, 95, 127, 217, 218, 290, 383
BseNI ACTGG 3 cut(s) 519, 565, 648
BseRI GAGGAG 2 cut(s) 182, 348
BseXI GCAGC 2 cut(s) 174, 258
Bsh1236I CGCG 1 cut(s) 101
BshFI GGCC 1 cut(s) 526
BsiHKAI GWGCWC 1 cut(s) 120
BsiHKCI CYCGRG 1 cut(s) 217
BsiSI CCGG 3 cut(s) 29, 218, 311
BslFI GGGAC 1 cut(s) 553
BslI CCNNNNNNNGG 8 cut(s) 28, 29, 95, 127, 217, 218, 290, 383
BsmFI GGGAC 1 cut(s) 553
BsnI GGCC 1 cut(s) 526
BsoBI CYCGRG 1 cut(s) 217
Bsp1286I GDGCHC 1 cut(s) 120
Bsp1407I TGTACA 1 cut(s) 79
Bsp143I GATC 4 cut(s) 294, 517, 669, 676
BspACI CCGC 7 cut(s) 7, 23, 73, 101, 139, 159, 268
BspANI GGCC 1 cut(s) 526
BspFNI CGCG 1 cut(s) 101
BspLI GGNNCC 1 cut(s) 306
BspMAI CTGCAG 3 cut(s) 192, 292, 487
BspMI ACCTGC 2 cut(s) 100, 295
BspPI GGATC 3 cut(s) 302, 525, 684
BsrGI TGTACA 1 cut(s) 79
BsrI ACTGG 3 cut(s) 519, 565, 648
BssECI CCNNGG 6 cut(s) 121, 216, 217, 309, 366, 377
BssMI GATC 4 cut(s) 294, 517, 669, 676
BssSI CACGAG 1 cut(s) 234
BssT1I CCWWGG 2 cut(s) 366, 377
Bst2BI CACGAG 1 cut(s) 234
Bst2UI CCWGG 2 cut(s) 62, 123
Bst6I CTCTTC 2 cut(s) 411, 652
BstAUI TGTACA 1 cut(s) 79
BstC8I GCNNGC 2 cut(s) 97, 163
BstF5I GGATG 5 cut(s) 178, 469, 580, 672, 693
BstFNI CGCG 1 cut(s) 101
BstHHI GCGC 3 cut(s) 101, 224, 392
BstKTI GATC 4 cut(s) 297, 520, 672, 679
BstMBI GATC 4 cut(s) 294, 517, 669, 676
BstNI CCWGG 2 cut(s) 62, 123
BstNSI RCATGY 1 cut(s) 625
BstSCI CCNGG 6 cut(s) 28, 60, 121, 216, 217, 309
BstSFI CTRYAG 3 cut(s) 188, 288, 483
BstUI CGCG 1 cut(s) 101
BstV1I GCAGC 2 cut(s) 174, 258
BstV2I GAAGAC 1 cut(s) 24
BsuRI GGCC 1 cut(s) 526
BtsCI GGATG 5 cut(s) 178, 469, 580, 672, 693
BtsIMutI CAGTG 1 cut(s) 304
BveI ACCTGC 2 cut(s) 100, 295
Cac8I GCNNGC 2 cut(s) 97, 163
CfoI GCGC 3 cut(s) 101, 224, 392
Cfr9I CCCGGG 1 cut(s) 217
Csp6I GTAC 3 cut(s) 80, 625, 649
CviAII CATG 1 cut(s) 622
CviJI RGCY 8 cut(s) 76, 142, 187, 250, 271, 356, 526, 614
CviKI_1 RGCY 8 cut(s) 76, 142, 187, 250, 271, 356, 526, 614
CviQI GTAC 3 cut(s) 80, 625, 649
DpnI GATC 4 cut(s) 296, 519, 671, 678
DpnII GATC 4 cut(s) 294, 517, 669, 676
DraI TTTAAA 1 cut(s) 256
Eam1104I CTCTTC 2 cut(s) 411, 652
EarI CTCTTC 2 cut(s) 411, 652
Eco130I CCWWGG 2 cut(s) 366, 377
Eco57I CTGAAG 3 cut(s) 392, 613, 630
Eco88I CYCGRG 1 cut(s) 217
EcoRII CCWGG 2 cut(s) 60, 121
EcoT14I CCWWGG 2 cut(s) 366, 377
ErhI CCWWGG 2 cut(s) 366, 377
FaeI CATG 1 cut(s) 625
FaqI GGGAC 1 cut(s) 553
FatI CATG 1 cut(s) 621
FauI CCCGC 1 cut(s) 30
Fnu4HI GCNGC 6 cut(s) 5, 74, 140, 188, 269, 272
FokI GGATG 4 cut(s) 185, 456, 567, 679
Fsp4HI GCNGC 6 cut(s) 5, 74, 140, 188, 269, 272
FspBI CTAG 1 cut(s) 697
GlaI GCGC 3 cut(s) 100, 223, 391
GluI GCNGC 6 cut(s) 5, 74, 140, 188, 269, 272
GsuI CTGGAG 1 cut(s) 665
HaeIII GGCC 1 cut(s) 526
HapII CCGG 3 cut(s) 29, 218, 311
HhaI GCGC 3 cut(s) 101, 224, 392
Hin1II CATG 1 cut(s) 625
Hin6I GCGC 3 cut(s) 99, 222, 390
HinP1I GCGC 3 cut(s) 99, 222, 390
HincII GTYRAC 1 cut(s) 402
HindII GTYRAC 1 cut(s) 402
HindIII AAGCTT 1 cut(s) 612
HinfI GANTC 2 cut(s) 371, 403
HpaII CCGG 3 cut(s) 29, 218, 311
Hpy166II GTNNAC 1 cut(s) 402
Hpy188I TCNGA 2 cut(s) 610, 681
Hpy8I GTNNAC 1 cut(s) 402
HpyAV CCTTC 1 cut(s) 537
HpyCH4V TGCA 6 cut(s) 182, 190, 239, 290, 485, 602
Hsp92II CATG 1 cut(s) 625
HspAI GCGC 3 cut(s) 99, 222, 390
Kzo9I GATC 4 cut(s) 294, 517, 669, 676
LmnI GCTCC 2 cut(s) 123, 361
Lsp1109I GCAGC 2 cut(s) 174, 258
MaeI CTAG 1 cut(s) 697
MalI GATC 4 cut(s) 296, 519, 671, 678
MboI GATC 4 cut(s) 294, 517, 669, 676
MboII GAAGA 5 cut(s) 26, 29, 398, 557, 669
MfeI CAATTG 1 cut(s) 322
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 4 cut(s) 322, 492, 508, 604
MlyI GAGTC 1 cut(s) 397
MmeI TCCRAC 2 cut(s) 183, 665
MnlI CCTC 8 cut(s) 36, 160, 163, 369, 376, 380, 412, 657
MseI TTAA 3 cut(s) 255, 396, 504
MspI CCGG 3 cut(s) 29, 218, 311
MspR9I CCNGG 6 cut(s) 30, 62, 123, 218, 219, 311
MunI CAATTG 1 cut(s) 322
MvaI CCWGG 2 cut(s) 62, 123
MvnI CGCG 1 cut(s) 101
NciI CCSGG 4 cut(s) 30, 218, 219, 311
NdeII GATC 4 cut(s) 294, 517, 669, 676
NlaIII CATG 1 cut(s) 625
NlaIV GGNNCC 1 cut(s) 306
NspI RCATGY 1 cut(s) 625
PaqCI CACCTGC 2 cut(s) 100, 295
PciI ACATGT 1 cut(s) 621
PfeI GAWTC 1 cut(s) 371
PflMI CCANNNNNTGG 1 cut(s) 95
PkrI GCNGC 6 cut(s) 6, 75, 141, 189, 270, 273
PleI GAGTC 1 cut(s) 397
PpsI GAGTC 1 cut(s) 397
PscI ACATGT 1 cut(s) 621
Psp6I CCWGG 2 cut(s) 60, 121
PspGI CCWGG 2 cut(s) 60, 121
PspN4I GGNNCC 1 cut(s) 306
PstI CTGCAG 3 cut(s) 192, 292, 487
RsaI GTAC 3 cut(s) 81, 626, 650
RsaNI GTAC 3 cut(s) 80, 625, 649
SaqAI TTAA 3 cut(s) 255, 396, 504
SatI GCNGC 6 cut(s) 5, 74, 140, 188, 269, 272
Sau3AI GATC 4 cut(s) 294, 517, 669, 676
SbfI CCTGCAGG 1 cut(s) 292
SchI GAGTC 1 cut(s) 397
ScrFI CCNGG 6 cut(s) 30, 62, 123, 218, 219, 311
SdaI CCTGCAGG 1 cut(s) 292
SduI GDGCHC 1 cut(s) 120
SetI ASST 8 cut(s) 58, 63, 94, 127, 245, 289, 358, 616
SfcI CTRYAG 3 cut(s) 188, 288, 483
SmaI CCCGGG 1 cut(s) 219
SmlI CTYRAG 1 cut(s) 554
SmoI CTYRAG 1 cut(s) 554
Sse8387I CCTGCAGG 1 cut(s) 292
Sse9I AATT 4 cut(s) 322, 492, 508, 604
SsiI CCGC 7 cut(s) 7, 23, 73, 101, 139, 159, 268
SspMI CTAG 1 cut(s) 697
StyD4I CCNGG 6 cut(s) 28, 60, 121, 216, 217, 309
StyI CCWWGG 2 cut(s) 366, 377
TasI AATT 4 cut(s) 322, 492, 508, 604
TatI WGTACW 3 cut(s) 79, 624, 648
TauI GCSGC 3 cut(s) 76, 142, 271
TfiI GAWTC 1 cut(s) 371
Tru1I TTAA 3 cut(s) 255, 396, 504
Tru9I TTAA 3 cut(s) 255, 396, 504
TscAI CASTG 1 cut(s) 304
TseI GCWGC 3 cut(s) 4, 187, 271
TspDTI ATGAA 1 cut(s) 458
TspMI CCCGGG 1 cut(s) 217
TspRI CASTG 1 cut(s) 304
Van91I CCANNNNNTGG 1 cut(s) 95
XapI RAATTY 1 cut(s) 604
XceI RCATGY 1 cut(s) 625
XmaI CCCGGG 1 cut(s) 217
XspI CTAG 1 cut(s) 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.