Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001877

Physical Location & Seq

Genomic Coordinates Forward (+)

27690036 .. 27693890

Gene Structure 3855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G269700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGTCGACTCCTGCGAGGAAGAGACTGATGAGGGATTTCAAGAGGTTGCAACAGGACCCCCCTGCCGGTATAAGTGGTGCTCCTCAAAACAATAATATTATGCTTTGGAATGCTGTTATATTTGGTCCTGATGACACCCCATGGGATGGAGGTACGTTTAAGTTGACACTTCAATTCACAGAGGATTATCCAAATAAGCCACCAACAGTTCGTTTTGTTTCTCGGATGTTTCATCCAAATATTTATGCGGATGGAAGCATTTGCTTGGACATCCTACAGAATCAGTGGAGTCCTATCTATGATGTAGCAGCTATACTTACCTCCATCCAGTCATTGCTCTGTGATCCAAACCCAAACTCTCCAGCAAATTCAGAAGCTGCACGGATGTTTAGCGAGAACAAGCGTGAATACAATAGGAGAGTCCGTGAGATTGTTGAGCAGAGTTGGACTGCTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009791 GO:0009987 GO:0010228 GO:0010498 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016574 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0022414 GO:0030163 GO:0031625 GO:0032446 GO:0032501 GO:0032502 GO:0033523 GO:0033554 GO:0034641 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051276 GO:0051603 GO:0051716 GO:0061458 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0090304 GO:0140096 GO:1901360 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

153

Amino Acids

17.35

Weight (kDa)

5.82

Isoelectric Point (pI)

71.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62540
fragaria_vesca	FvH4_5g15330 FvH4_6g02830 FvH4_6g02830 FvH4_6g02830 FvH4_6g02830 FvH4_6g02830
malus_domestica	MD06G1189200.v1.1 MD13G1077300.v1.1 MD14G1196200.v1.1 MD16G1077400.v1.1
prunus_persica	Prupe.1G269700_v2.0.a1 Prupe.1G269700_v2.0.a1 Prupe.5G187900_v2.0.a1 Prupe.5G188000_v2.0.a1 Prupe.5G188000_v2.0.a1
pyrus_communis	pycom06g16810 pycom14g16290 pycom16g06670
rosa_chinensis	RchiOBHm_Chr3g0450771 RchiOBHm_Chr3g0450881 RchiOBHm_Chr7g0180751
rosa_laevigata	RLG00000005235 RLG00000025697
rosa_multiflora	Rmu_co8464199.1_g000001 Rmu_sc0000078.1_g000010 Rmu_sc0000078.1_g000023
rosa_roxburghii	Rroxscaffold_3G00272590 Rroxscaffold_6G00428420 Rroxscaffold_6G00428500
rosa_rugosa	Rorug02G0630400 Rorug06G0435500
rosa_samantha	Rh3AG031600 Rh3AG032700 Rh3BG032200 Rh3BG032900 Rh3CG030900 Rh3CG031700 Rh3DG031800 Rh3DG032600 Rh7AG037200 Rh7BG036900 Rh7CG038600 Rh7DG037100
rosa_wichuraiana	Rw3G002420 Rw7G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	146
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	1 cut(s)	248
AclWI	GGATC	1 cut(s)	338
AcsI	RAATTY	1 cut(s)	367
AfaI	GTAC	1 cut(s)	154
AfiI	CCNNNNNNNGG	2 cut(s)	65, 146
AgsI	TTSAA	2 cut(s)	40, 173
AluBI	AGCT	2 cut(s)	311, 377
AluI	AGCT	2 cut(s)	311, 377
Alw21I	GWGCWC	1 cut(s)	82
Alw26I	GTCTC	1 cut(s)	16
AlwI	GGATC	1 cut(s)	338
AlwNI	CAGNNNCTG	1 cut(s)	377
ApeKI	GCWGC	2 cut(s)	308, 377
ApoI	RAATTY	1 cut(s)	367
AspS9I	GGNCC	2 cut(s)	55, 125
AvaII	GGWCC	2 cut(s)	55, 125
Bbv12I	GWGCWC	1 cut(s)	82
BbvI	GCAGC	2 cut(s)	320, 364
BccI	CCATC	3 cut(s)	140, 245, 332
BcoDI	GTCTC	1 cut(s)	16
BfmI	CTRYAG	1 cut(s)	275
BisI	GCNGC	2 cut(s)	309, 378
BlsI	GCNGC	2 cut(s)	310, 379
Bme18I	GGWCC	2 cut(s)	55, 125
BmgT120I	GGNCC	2 cut(s)	55, 125
BmiI	GGNNCC	1 cut(s)	57
BpmI	CTGGAG	1 cut(s)	345
BsaJI	CCNNGG	1 cut(s)	140
BsaXI	ACNNNNNCTCC	2 cut(s)	409, 439
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 146
Bse118I	RCCGGY	1 cut(s)	65
Bse1I	ACTGG	1 cut(s)	328
Bse3DI	GCAATG	1 cut(s)	332
BseDI	CCNNGG	1 cut(s)	140
BseGI	GGATG	7 cut(s)	151, 231, 232, 256, 270, 324, 390
BseLI	CCNNNNNNNGG	2 cut(s)	65, 146
BseMI	GCAATG	1 cut(s)	332
BseNI	ACTGG	1 cut(s)	328
BseRI	GAGGAG	1 cut(s)	72
BseXI	GCAGC	2 cut(s)	320, 364
BsgI	GTGCAG	1 cut(s)	363
BsiHKAI	GWGCWC	1 cut(s)	82
BsiSI	CCGG	1 cut(s)	66
BslI	CCNNNNNNNGG	2 cut(s)	65, 146
BsmAI	GTCTC	1 cut(s)	16
BsmI	GAATGC	1 cut(s)	115
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp143I	GATC	1 cut(s)	343
Bsp19I	CCATGG	1 cut(s)	140
BspACI	CCGC	1 cut(s)	248
BspLI	GGNNCC	1 cut(s)	57
BspPI	GGATC	1 cut(s)	338
BsrDI	GCAATG	1 cut(s)	332
BsrFI	RCCGGY	1 cut(s)	65
BsrI	ACTGG	1 cut(s)	328
BssAI	RCCGGY	1 cut(s)	65
BssECI	CCNNGG	1 cut(s)	140
BssMI	GATC	1 cut(s)	343
BssT1I	CCWWGG	1 cut(s)	140
Bst4CI	ACNGT	1 cut(s)	208
Bst6I	CTCTTC	1 cut(s)	14
BstDSI	CCRYGG	1 cut(s)	140
BstF5I	GGATG	7 cut(s)	151, 231, 232, 256, 270, 324, 390
BstKTI	GATC	1 cut(s)	346
BstMAI	GTCTC	1 cut(s)	16
BstMBI	GATC	1 cut(s)	343
BstSFI	CTRYAG	1 cut(s)	275
BstV1I	GCAGC	2 cut(s)	320, 364
BtgI	CCRYGG	1 cut(s)	140
BtsCI	GGATG	7 cut(s)	151, 231, 232, 256, 270, 324, 390
BtsIMutI	CAGTG	1 cut(s)	290
CaiI	CAGNNNCTG	1 cut(s)	377
Cfr10I	RCCGGY	1 cut(s)	65
Cfr13I	GGNCC	2 cut(s)	55, 125
Csp6I	GTAC	1 cut(s)	153
CviAII	CATG	1 cut(s)	141
CviJI	RGCY	3 cut(s)	199, 311, 377
CviKI_1	RGCY	3 cut(s)	199, 311, 377
CviQI	GTAC	1 cut(s)	153
DpnI	GATC	1 cut(s)	345
DpnII	GATC	1 cut(s)	343
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
Eco130I	CCWWGG	1 cut(s)	140
Eco47I	GGWCC	2 cut(s)	55, 125
EcoO109I	RGGNCCY	1 cut(s)	55
EcoT14I	CCWWGG	1 cut(s)	140
ErhI	CCWWGG	1 cut(s)	140
FaeI	CATG	1 cut(s)	144
FaiI	YATR	7 cut(s)	71, 101, 119, 142, 246, 300, 314
FatI	CATG	1 cut(s)	140
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	2 cut(s)	309, 378
FokI	GGATG	7 cut(s)	158, 219, 238, 257, 263, 311, 397
Fsp4HI	GCNGC	2 cut(s)	309, 378
GluI	GCNGC	2 cut(s)	309, 378
GsuI	CTGGAG	1 cut(s)	345
HapII	CCGG	1 cut(s)	66
Hin1II	CATG	1 cut(s)	144
HincII	GTYRAC	2 cut(s)	6, 165
HindII	GTYRAC	2 cut(s)	6, 165
HinfI	GANTC	4 cut(s)	7, 280, 289, 420
HpaII	CCGG	1 cut(s)	66
Hpy166II	GTNNAC	2 cut(s)	6, 165
Hpy188I	TCNGA	2 cut(s)	225, 373
Hpy188III	TCNNGA	2 cut(s)	40, 128
Hpy8I	GTNNAC	2 cut(s)	6, 165
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4IV	ACGT	1 cut(s)	155
HpyCH4V	TGCA	2 cut(s)	49, 380
HpySE526I	ACGT	1 cut(s)	155
Hsp92II	CATG	1 cut(s)	144
Kzo9I	GATC	1 cut(s)	343
LmnI	GCTCC	1 cut(s)	85
LpnPI	CCDG	7 cut(s)	24, 38, 75, 79, 141, 341, 375
Lsp1109I	GCAGC	2 cut(s)	320, 364
MaeII	ACGT	1 cut(s)	155
MalI	GATC	1 cut(s)	345
MboI	GATC	1 cut(s)	343
MboII	GAAGA	1 cut(s)	31
MhlI	GDGCHC	1 cut(s)	82
MluCI	AATT	2 cut(s)	173, 367
MlyI	GAGTC	2 cut(s)	298, 429
MmeI	TCCRAC	1 cut(s)	425
MnlI	CCTC	7 cut(s)	9, 24, 36, 93, 143, 175, 331
MseI	TTAA	1 cut(s)	159
MspI	CCGG	1 cut(s)	66
Mva1269I	GAATGC	1 cut(s)	115
NcoI	CCATGG	1 cut(s)	140
NdeII	GATC	1 cut(s)	343
NlaIII	CATG	1 cut(s)	144
NlaIV	GGNNCC	1 cut(s)	57
PcsI	WCGNNNNNNNCGW	1 cut(s)	11
PctI	GAATGC	1 cut(s)	115
PfeI	GAWTC	1 cut(s)	280
PflMI	CCANNNNNTGG	1 cut(s)	146
PkrI	GCNGC	2 cut(s)	310, 379
PleI	GAGTC	2 cut(s)	297, 428
PpsI	GAGTC	2 cut(s)	297, 428
PpuMI	RGGWCCY	1 cut(s)	55
Psp5II	RGGWCCY	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	57
PspPI	GGNCC	2 cut(s)	55, 125
PspPPI	RGGWCCY	1 cut(s)	55
PstNI	CAGNNNCTG	1 cut(s)	377
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	2 cut(s)	309, 378
Sau3AI	GATC	1 cut(s)	343
Sau96I	GGNCC	2 cut(s)	55, 125
SchI	GAGTC	2 cut(s)	298, 429
SduI	GDGCHC	1 cut(s)	82
SetI	ASST	6 cut(s)	47, 154, 158, 313, 323, 379
SfcI	CTRYAG	1 cut(s)	275
SinI	GGWCC	2 cut(s)	55, 125
Sse9I	AATT	2 cut(s)	173, 367
SsiI	CCGC	1 cut(s)	248
SspI	AATATT	2 cut(s)	97, 241
StyI	CCWWGG	1 cut(s)	140
TaaI	ACNGT	1 cut(s)	208
TaiI	ACGT	1 cut(s)	158
TaqI	TCGA	1 cut(s)	5
TasI	AATT	2 cut(s)	173, 367
TfiI	GAWTC	1 cut(s)	280
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TscAI	CASTG	1 cut(s)	290
TseI	GCWGC	2 cut(s)	308, 377
TspDTI	ATGAA	1 cut(s)	221
TspGWI	ACGGA	2 cut(s)	397, 413
TspRI	CASTG	1 cut(s)	290
Van91I	CCANNNNNTGG	1 cut(s)	146
VpaK11BI	GGWCC	2 cut(s)	55, 125
XapI	RAATTY	1 cut(s)	367
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.