Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001877

Physical Location & Seq

Genomic Coordinates Forward (+)

57013864 .. 57015052

Gene Structure 1189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0435500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGAACTTCAAAAACAAGGAAAATCCAGAAGCAAGATATTGAAATTCCTACCCAAAGCTGCCTCTGCGGTTTACTTTCATGGCGCTGCTTACAGCCCTAAACACAAAGCTCATGGCGGCCGGGGAGCGTTCTCCGGCCCGCTTATTCCGGACGAAGCTCGGAGAAAGCCGAGGAACGTCGGAAGCAGTAGCTTCGGGAGCTTAGATGAAGTCGAACCCACATCGCCAAAAGTTTCGTGCATGGGACAGATTAAGCACAAGAAACAACAACACCAGCAAATCAAGAAGACAAAACGCGCCGGTTTACCTCCTAGAGATGAATCAAAGCCAGCTTCGTGGTCTCCCCGGGAGATAAAGAAGCACTCGTTTGCGTTTCGGAGGATGTTTAGTAGTGTGAATCCGAGTCGAAAATCCGATGCCGACAGCGATGAGCATAAGAACAAGGCGGCGGGGCTTCCGGATAGAGCGCCGTCGTTGAGCCAGATGCGGCGGTTTGCGAGCGGAAGAGGGCAGGCTTTTGCCAACTTCGATTGGCAAGCGCCGCAGGCCAGGGTGGCACCACGTCACGATGACGATAACAACCGGAATTATCATTCGGATGAAGATAGAGAATATGGTGATCACGAAGATCACGAGCGTGAGTATACCGGAATCGCTTTCTCGGCGCCGTTGACGGTCGGTGGGTCGCCGGGAGGTAACATGGAGTTGCAGCCAAGGAAAGAGATCAATCTATGGAAGAGAAGAACCATGGCTCCGCCTAGTCCTCTACAATTGAAGCCCATGGTTAAAGCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

265

Amino Acids

29.69

Weight (kDa)

10.1

Isoelectric Point (pI)

58.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62540
fragaria_vesca	FvH4_5g15330 FvH4_6g02830 FvH4_6g02830 FvH4_6g02830 FvH4_6g02830 FvH4_6g02830
malus_domestica	MD06G1189200.v1.1 MD13G1077300.v1.1 MD14G1196200.v1.1 MD16G1077400.v1.1
prunus_persica	Prupe.1G269700_v2.0.a1 Prupe.1G269700_v2.0.a1 Prupe.5G187900_v2.0.a1 Prupe.5G188000_v2.0.a1 Prupe.5G188000_v2.0.a1
pyrus_communis	pycom06g16810 pycom14g16290 pycom16g06670
rosa_chinensis	RchiOBHm_Chr3g0450771 RchiOBHm_Chr3g0450881 RchiOBHm_Chr7g0180751
rosa_laevigata	RLG00000005235 RLG00000025697
rosa_multiflora	Rmu_co8464199.1_g000001 Rmu_sc0000078.1_g000010 Rmu_sc0000078.1_g000023
rosa_roxburghii	Rroxscaffold_3G00272590 Rroxscaffold_6G00428420 Rroxscaffold_6G00428500
rosa_rugosa	Rorug02G0630400 Rorug06G0435500
rosa_samantha	Rh3AG031600 Rh3AG032700 Rh3BG032200 Rh3BG032900 Rh3CG030900 Rh3CG031700 Rh3DG031800 Rh3DG032600 Rh7AG037200 Rh7BG036900 Rh7CG038600 Rh7DG037100
rosa_wichuraiana	Rw3G002420 Rw7G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	556, 664
AccBSI	CCGCTC	1 cut(s)	501
AccI	GTMKAC	1 cut(s)	644
AccII	CGCG	1 cut(s)	297
AccIII	TCCGGA	2 cut(s)	148, 457
AcoI	YGGCCR	1 cut(s)	118
AcsI	RAATTY	1 cut(s)	44
AcyI	GRCGYC	1 cut(s)	665
AgsI	TTSAA	3 cut(s)	11, 43, 775
AjiI	CACGTC	1 cut(s)	563
AjnI	CCWGG	1 cut(s)	548
AleI	CACNNNNGTG	1 cut(s)	636
AloI	GAACNNNNNNTCC	2 cut(s)	736, 768
AluBI	AGCT	6 cut(s)	59, 110, 158, 192, 201, 332
AluI	AGCT	6 cut(s)	59, 110, 158, 192, 201, 332
Alw26I	GTCTC	1 cut(s)	345
Ama87I	CYCGRG	1 cut(s)	345
Aor13HI	TCCGGA	2 cut(s)	148, 457
AoxI	GGCC	3 cut(s)	118, 136, 546
ApeKI	GCWGC	3 cut(s)	59, 86, 709
ApoI	RAATTY	1 cut(s)	44
AspLEI	GCGC	5 cut(s)	86, 299, 469, 541, 667
AspS9I	GGNCC	1 cut(s)	137
AsuC2I	CCSGG	4 cut(s)	122, 346, 347, 690
AsuHPI	GGTGA	1 cut(s)	629
AvaI	CYCGRG	1 cut(s)	345
BanI	GGYRCC	2 cut(s)	556, 664
BauI	CACGAG	1 cut(s)	632
BbsI	GAAGAC	1 cut(s)	293
BbvI	GCAGC	3 cut(s)	46, 73, 721
BceAI	ACGGC	2 cut(s)	454, 652
BcgI	CGANNNNNNTGC	2 cut(s)	175, 209
BciT130I	CCWGG	1 cut(s)	550
BclI	TGATCA	1 cut(s)	619
BcnI	CCSGG	4 cut(s)	122, 346, 347, 690
BcoDI	GTCTC	1 cut(s)	345
BfaI	CTAG	2 cut(s)	312, 759
BfoI	RGCGCY	4 cut(s)	87, 470, 542, 668
BglI	GCCNNNNNGGC	1 cut(s)	554
BisI	GCNGC	7 cut(s)	60, 87, 118, 447, 488, 542, 710
BlsI	GCNGC	7 cut(s)	61, 88, 119, 448, 489, 543, 711
Bme1390I	CCNGG	5 cut(s)	122, 346, 347, 550, 690
BmeT110I	CYCGRG	1 cut(s)	345
BmgBI	CACGTC	1 cut(s)	563
BmgT120I	GGNCC	1 cut(s)	137
BmiI	GGNNCC	3 cut(s)	558, 666, 753
BmrFI	CCNGG	5 cut(s)	122, 346, 347, 550, 690
BmsI	GCATC	2 cut(s)	406, 474
BpiI	GAAGAC	1 cut(s)	293
BpuMI	CCSGG	4 cut(s)	122, 346, 347, 690
BsaHI	GRCGYC	1 cut(s)	665
BsaI	GGTCTC	1 cut(s)	345
BsaJI	CCNNGG	8 cut(s)	121, 170, 344, 345, 549, 713, 747, 780
BsaWI	WCCGGW	4 cut(s)	148, 457, 582, 647
BsaXI	ACNNNNNCTCC	2 cut(s)	736, 766
Bse118I	RCCGGY	1 cut(s)	299
BseAI	TCCGGA	2 cut(s)	148, 457
BseBI	CCWGG	1 cut(s)	550
BseDI	CCNNGG	8 cut(s)	121, 170, 344, 345, 549, 713, 747, 780
BseGI	GGATG	2 cut(s)	387, 604
BseX3I	CGGCCG	1 cut(s)	118
BseXI	GCAGC	3 cut(s)	46, 73, 721
Bsh1236I	CGCG	1 cut(s)	297
Bsh1285I	CGRYCG	2 cut(s)	121, 678
BshFI	GGCC	3 cut(s)	120, 138, 548
BshNI	GGYRCC	2 cut(s)	556, 664
BsiEI	CGRYCG	2 cut(s)	121, 678
BsiHKCI	CYCGRG	1 cut(s)	345
BsiSI	CCGG	9 cut(s)	121, 135, 149, 300, 346, 458, 583, 648, 689
BslFI	GGGAC	1 cut(s)	258
BsmAI	GTCTC	1 cut(s)	345
BsmFI	GGGAC	1 cut(s)	258
BsnI	GGCC	3 cut(s)	120, 138, 548
Bso31I	GGTCTC	1 cut(s)	345
BsoBI	CYCGRG	1 cut(s)	345
Bsp13I	TCCGGA	2 cut(s)	148, 457
Bsp143I	GATC	3 cut(s)	619, 628, 723
Bsp19I	CCATGG	2 cut(s)	747, 780
BspANI	GGCC	3 cut(s)	120, 138, 548
BspEI	TCCGGA	2 cut(s)	148, 457
BspFNI	CGCG	1 cut(s)	297
BspLI	GGNNCC	3 cut(s)	558, 666, 753
BspT107I	GGYRCC	2 cut(s)	556, 664
BspTNI	GGTCTC	1 cut(s)	345
BsrBI	CCGCTC	1 cut(s)	501
BsrFI	RCCGGY	1 cut(s)	299
BssAI	RCCGGY	1 cut(s)	299
BssECI	CCNNGG	8 cut(s)	121, 170, 344, 345, 549, 713, 747, 780
BssMI	GATC	3 cut(s)	619, 628, 723
BssNAI	GTATAC	1 cut(s)	645
BssNI	GRCGYC	1 cut(s)	665
BssSI	CACGAG	1 cut(s)	632
BssT1I	CCWWGG	3 cut(s)	713, 747, 780
Bst1107I	GTATAC	1 cut(s)	645
Bst2BI	CACGAG	1 cut(s)	632
Bst2UI	CCWGG	1 cut(s)	550
Bst4CI	ACNGT	1 cut(s)	676
Bst6I	CTCTTC	2 cut(s)	499, 731
BstACI	GRCGYC	1 cut(s)	665
BstC8I	GCNNGC	6 cut(s)	140, 330, 499, 513, 537, 546
BstDEI	CTNAG	1 cut(s)	202
BstDSI	CCRYGG	2 cut(s)	747, 780
BstF5I	GGATG	2 cut(s)	387, 604
BstFNI	CGCG	1 cut(s)	297
BstH2I	RGCGCY	4 cut(s)	87, 470, 542, 668
BstHHI	GCGC	5 cut(s)	86, 299, 469, 541, 667
BstKTI	GATC	3 cut(s)	622, 631, 726
BstMAI	GTCTC	1 cut(s)	345
BstMBI	GATC	3 cut(s)	619, 628, 723
BstMCI	CGRYCG	2 cut(s)	121, 678
BstMWI	GCNNNNNNNGC	6 cut(s)	65, 198, 541, 545, 554, 662
BstNI	CCWGG	1 cut(s)	550
BstSCI	CCNGG	5 cut(s)	120, 344, 345, 548, 688
BstUI	CGCG	1 cut(s)	297
BstV1I	GCAGC	3 cut(s)	46, 73, 721
BstV2I	GAAGAC	1 cut(s)	293
BstXI	CCANNNNNNTGG	1 cut(s)	336
BstZ17I	GTATAC	1 cut(s)	645
BstZI	CGGCCG	1 cut(s)	118
BsuRI	GGCC	3 cut(s)	120, 138, 548
BtgI	CCRYGG	2 cut(s)	747, 780
BtgZI	GCGATG	2 cut(s)	207, 441
BtrI	CACGTC	1 cut(s)	563
BtsCI	GGATG	2 cut(s)	387, 604
Cac8I	GCNNGC	6 cut(s)	140, 330, 499, 513, 537, 546
CfoI	GCGC	5 cut(s)	86, 299, 469, 541, 667
Cfr10I	RCCGGY	1 cut(s)	299
Cfr13I	GGNCC	1 cut(s)	137
Cfr9I	CCCGGG	1 cut(s)	345
CviAII	CATG	6 cut(s)	80, 113, 241, 700, 748, 781
DdeI	CTNAG	1 cut(s)	202
DinI	GGCGCC	1 cut(s)	666
DpnI	GATC	3 cut(s)	621, 630, 725
DpnII	GATC	3 cut(s)	619, 628, 723
EaeI	YGGCCR	1 cut(s)	118
EagI	CGGCCG	1 cut(s)	118
Eam1104I	CTCTTC	2 cut(s)	499, 731
EarI	CTCTTC	2 cut(s)	499, 731
EciI	GGCGGA	1 cut(s)	744
EclXI	CGGCCG	1 cut(s)	118
Eco130I	CCWWGG	3 cut(s)	713, 747, 780
Eco31I	GGTCTC	1 cut(s)	345
Eco52I	CGGCCG	1 cut(s)	118
Eco88I	CYCGRG	1 cut(s)	345
EcoRII	CCWGG	1 cut(s)	548
EcoT14I	CCWWGG	3 cut(s)	713, 747, 780
EgeI	GGCGCC	1 cut(s)	666
EheI	GGCGCC	1 cut(s)	666
ErhI	CCWWGG	3 cut(s)	713, 747, 780
FaeI	CATG	6 cut(s)	83, 116, 244, 703, 751, 784
FaqI	GGGAC	1 cut(s)	258
FatI	CATG	6 cut(s)	79, 112, 240, 699, 747, 780
FauI	CCCGC	2 cut(s)	147, 442
FbaI	TGATCA	1 cut(s)	619
FblI	GTMKAC	1 cut(s)	644
Fnu4HI	GCNGC	7 cut(s)	60, 87, 118, 447, 488, 542, 710
FokI	GGATG	2 cut(s)	394, 611
Fsp4HI	GCNGC	7 cut(s)	60, 87, 118, 447, 488, 542, 710
FspBI	CTAG	2 cut(s)	312, 759
GlaI	GCGC	5 cut(s)	85, 298, 468, 540, 666
GluI	GCNGC	7 cut(s)	60, 87, 118, 447, 488, 542, 710
HaeII	RGCGCY	4 cut(s)	87, 470, 542, 668
HaeIII	GGCC	3 cut(s)	120, 138, 548
HapII	CCGG	9 cut(s)	121, 135, 149, 300, 346, 458, 583, 648, 689
HhaI	GCGC	5 cut(s)	86, 299, 469, 541, 667
Hin1I	GRCGYC	1 cut(s)	665
Hin1II	CATG	6 cut(s)	83, 116, 244, 703, 751, 784
Hin6I	GCGC	5 cut(s)	84, 297, 467, 539, 665
HinP1I	GCGC	5 cut(s)	84, 297, 467, 539, 665
HincII	GTYRAC	1 cut(s)	672
HindII	GTYRAC	1 cut(s)	672
HinfI	GANTC	4 cut(s)	320, 397, 403, 651
HpaII	CCGG	9 cut(s)	121, 135, 149, 300, 346, 458, 583, 648, 689
HphI	GGTGA	1 cut(s)	629
Hpy166II	GTNNAC	4 cut(s)	73, 305, 645, 672
Hpy188I	TCNGA	6 cut(s)	162, 182, 378, 402, 415, 598
Hpy188III	TCNNGA	8 cut(s)	27, 149, 196, 283, 458, 566, 623, 632
Hpy8I	GTNNAC	4 cut(s)	73, 305, 645, 672
Hpy99I	CGWCG	2 cut(s)	182, 475
HpyCH4III	ACNGT	1 cut(s)	676
HpyCH4IV	ACGT	2 cut(s)	177, 562
HpyCH4V	TGCA	2 cut(s)	240, 709
HpyF10VI	GCNNNNNNNGC	6 cut(s)	65, 198, 541, 545, 554, 662
HpyF3I	CTNAG	1 cut(s)	202
HpySE526I	ACGT	2 cut(s)	177, 562
Hsp92I	GRCGYC	1 cut(s)	665
Hsp92II	CATG	6 cut(s)	83, 116, 244, 703, 751, 784
HspAI	GCGC	5 cut(s)	84, 297, 467, 539, 665
KasI	GGCGCC	1 cut(s)	664
Kpn2I	TCCGGA	2 cut(s)	148, 457
Ksp22I	TGATCA	1 cut(s)	619
Kzo9I	GATC	3 cut(s)	619, 628, 723
LmnI	GCTCC	3 cut(s)	125, 198, 757
Lsp1109I	GCAGC	3 cut(s)	46, 73, 721
LweI	GCATC	2 cut(s)	406, 474
MaeI	CTAG	2 cut(s)	312, 759
MaeII	ACGT	2 cut(s)	177, 562
MaeIII	GTNAC	2 cut(s)	563, 695
MalI	GATC	3 cut(s)	621, 630, 725
MbiI	CCGCTC	1 cut(s)	501
MboI	GATC	3 cut(s)	619, 628, 723
MboII	GAAGA	6 cut(s)	298, 516, 614, 638, 748, 753
MfeI	CAATTG	1 cut(s)	770
MluCI	AATT	4 cut(s)	44, 586, 770, 793
Mly113I	GGCGCC	1 cut(s)	665
MlyI	GAGTC	1 cut(s)	412
MmeI	TCCRAC	1 cut(s)	160
MnlI	CCTC	7 cut(s)	73, 165, 318, 372, 500, 686, 774
MroI	TCCGGA	2 cut(s)	148, 457
MseI	TTAA	2 cut(s)	252, 786
MslI	CAYNNNNRTG	2 cut(s)	597, 636
MspI	CCGG	9 cut(s)	121, 135, 149, 300, 346, 458, 583, 648, 689
MspR9I	CCNGG	5 cut(s)	122, 346, 347, 550, 690
MunI	CAATTG	1 cut(s)	770
MvaI	CCWGG	1 cut(s)	550
MvnI	CGCG	1 cut(s)	297
MwoI	GCNNNNNNNGC	6 cut(s)	65, 198, 541, 545, 554, 662
NarI	GGCGCC	1 cut(s)	665
NciI	CCSGG	4 cut(s)	122, 346, 347, 690
NcoI	CCATGG	2 cut(s)	747, 780
NdeII	GATC	3 cut(s)	619, 628, 723
NlaIII	CATG	6 cut(s)	83, 116, 244, 703, 751, 784
NlaIV	GGNNCC	3 cut(s)	558, 666, 753
NmeAIII	GCCGAG	2 cut(s)	195, 641
NmuCI	GTSAC	1 cut(s)	563
OliI	CACNNNNGTG	1 cut(s)	636
PcsI	WCGNNNNNNNCGW	1 cut(s)	630
PfeI	GAWTC	3 cut(s)	320, 397, 651
PkrI	GCNGC	7 cut(s)	61, 88, 119, 448, 489, 543, 711
PleI	GAGTC	1 cut(s)	411
PluTI	GGCGCC	1 cut(s)	668
PpsI	GAGTC	1 cut(s)	411
Psp6I	CCWGG	1 cut(s)	548
PspGI	CCWGG	1 cut(s)	548
PspN4I	GGNNCC	3 cut(s)	558, 666, 753
PspPI	GGNCC	1 cut(s)	137
RseI	CAYNNNNRTG	2 cut(s)	597, 636
SaqAI	TTAA	2 cut(s)	252, 786
SatI	GCNGC	7 cut(s)	60, 87, 118, 447, 488, 542, 710
Sau3AI	GATC	3 cut(s)	619, 628, 723
Sau96I	GGNCC	1 cut(s)	137
SchI	GAGTC	1 cut(s)	412
ScrFI	CCNGG	5 cut(s)	122, 346, 347, 550, 690
SfaNI	GCATC	2 cut(s)	406, 474
SfoI	GGCGCC	1 cut(s)	666
SmaI	CCCGGG	1 cut(s)	347
SmiMI	CAYNNNNRTG	2 cut(s)	597, 636
Sse9I	AATT	4 cut(s)	44, 586, 770, 793
SspDI	GGCGCC	1 cut(s)	664
SspMI	CTAG	2 cut(s)	312, 759
StyD4I	CCNGG	5 cut(s)	120, 344, 345, 548, 688
StyI	CCWWGG	3 cut(s)	713, 747, 780
TaaI	ACNGT	1 cut(s)	676
TaiI	ACGT	2 cut(s)	180, 565
TaqI	TCGA	3 cut(s)	213, 406, 528
TasI	AATT	4 cut(s)	44, 586, 770, 793
TauI	GCSGC	4 cut(s)	120, 449, 490, 544
TfiI	GAWTC	3 cut(s)	320, 397, 651
Tru1I	TTAA	2 cut(s)	252, 786
Tru9I	TTAA	2 cut(s)	252, 786
TseFI	GTSAC	1 cut(s)	563
TseI	GCWGC	3 cut(s)	59, 86, 709
Tsp45I	GTSAC	1 cut(s)	563
TspDTI	ATGAA	4 cut(s)	68, 222, 333, 615
TspMI	CCCGGG	1 cut(s)	345
XapI	RAATTY	1 cut(s)	44
XmaI	CCCGGG	1 cut(s)	345
XmiI	GTMKAC	1 cut(s)	644
XspI	CTAG	2 cut(s)	312, 759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.